RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ZNF706Q9Y5V0 76 aaPredicted RBP5.94□□□□□ -1.46
PDLIM5-222ENST00000615540 CHKB-CPT1BH3BT56 60 aa5.94□□□□□ -1.46
PDLIM5-222ENST00000615540 IGLV6-57P01721 117 aa5.94□□□□□ -1.46
PDLIM5-222ENST00000615540 JMJD1CQ15652 2540 aa5.93□□□□□ -1.46
PDLIM5-222ENST00000615540 LRRK2Q5S007 2527 aa5.93□□□□□ -1.46
PDLIM5-222ENST00000615540 USP9XQ93008 2570 aaPredicted RBP5.93□□□□□ -1.46
PDLIM5-222ENST00000615540 VPREB1P12018 145 aa5.93□□□□□ -1.46
PDLIM5-222ENST00000615540 IGHV6-1A0A0B4J1U7 121 aa5.92□□□□□ -1.46
PDLIM5-222ENST00000615540 DNAH10OSP0CZ25 163 aa5.92□□□□□ -1.46
PDLIM5-222ENST00000615540 TRAV7A0A075B6U4 112 aa5.91□□□□□ -1.46
PDLIM5-222ENST00000615540 PRR34Q9NV39 138 aa5.91□□□□□ -1.46
PDLIM5-222ENST00000615540 Q6ZRX8 168 aa5.91□□□□□ -1.46
PDLIM5-222ENST00000615540 SMIM29Q86T20 159 aa5.9□□□□□ -1.46
PDLIM5-222ENST00000615540 USP9YO00507 2555 aaPredicted RBP5.9□□□□□ -1.46
PDLIM5-222ENST00000615540 FN1P02751 2386 aaKnown RBP5.89□□□□□ -1.47
PDLIM5-222ENST00000615540 EPG5Q9HCE0 2579 aa5.89□□□□□ -1.47
PDLIM5-222ENST00000615540 A0A0G2JQZ4 141 aa5.89□□□□□ -1.47
PDLIM5-222ENST00000615540 NBDYA0A0U1RRE5 68 aa5.89□□□□□ -1.47
PDLIM5-222ENST00000615540 A0A1W2PNN7 141 aa5.89□□□□□ -1.47
PDLIM5-222ENST00000615540 NHLRC4P0CG21 123 aaPredicted RBP5.89□□□□□ -1.47
PDLIM5-222ENST00000615540 BRK1Q8WUW1 75 aa5.89□□□□□ -1.47
PDLIM5-222ENST00000615540 EPM2AB3EWF7 344 aa5.88□□□□□ -1.47
PDLIM5-222ENST00000615540 IGSF10Q6WRI0 2623 aa5.88□□□□□ -1.47
PDLIM5-222ENST00000615540 C2CD3Q4AC94 2353 aa5.88□□□□□ -1.47
PDLIM5-222ENST00000615540 RTL8CO15255 209 aa5.88□□□□□ -1.47
PDLIM5-222ENST00000615540 RPL37AP61513 92 aaKnown RBP5.88□□□□□ -1.47
PDLIM5-222ENST00000615540 LOC110117498A0A087WWA1 95 aa5.88□□□□□ -1.47
PDLIM5-222ENST00000615540 C16orf90A8MZG2 172 aa5.88□□□□□ -1.47
PDLIM5-222ENST00000615540 CFAP46Q8IYW2 2715 aa5.87□□□□□ -1.47
PDLIM5-222ENST00000615540 MTORP42345 2549 aa5.87□□□□□ -1.47
PDLIM5-222ENST00000615540 TRBV7-6A0A0J9YX20 115 aa5.87□□□□□ -1.47
PDLIM5-222ENST00000615540 CXCL6P80162 114 aa5.87□□□□□ -1.47
PDLIM5-222ENST00000615540 LINC00476Q8WZB0 136 aa5.87□□□□□ -1.47
PDLIM5-222ENST00000615540 TEX15Q9BXT5 2789 aa5.87□□□□□ -1.47
PDLIM5-222ENST00000615540 IGLV1-50A0A075B6I6 118 aa5.86□□□□□ -1.47
PDLIM5-222ENST00000615540 CASC2Q6XLA1 102 aa5.86□□□□□ -1.47
PDLIM5-222ENST00000615540 MYO9AB2RTY4 2548 aa5.86□□□□□ -1.47
PDLIM5-222ENST00000615540 HCG22E2RYF7 251 aa5.86□□□□□ -1.47
PDLIM5-222ENST00000615540 LINC00208Q96KT6 92 aa5.85□□□□□ -1.47
PDLIM5-222ENST00000615540 MOBPQ13875 183 aa5.85□□□□□ -1.47
PDLIM5-222ENST00000615540 TM2D3Q9BRN9 247 aa5.84□□□□□ -1.47
PDLIM5-222ENST00000615540 ITPR3Q14573 2671 aa5.84□□□□□ -1.47
PDLIM5-222ENST00000615540 PCOTHQ58A44 107 aa5.84□□□□□ -1.47
PDLIM5-222ENST00000615540 ITPR1Q14643 2758 aa5.83□□□□□ -1.48
PDLIM5-222ENST00000615540 FLNAP21333 2647 aaKnown RBP5.83□□□□□ -1.48
PDLIM5-222ENST00000615540 NDUFC1O43677 76 aa5.83□□□□□ -1.48
PDLIM5-222ENST00000615540 Q8NDZ9 215 aa5.82□□□□□ -1.48
PDLIM5-222ENST00000615540 FBN2P35556 2912 aa5.82□□□□□ -1.48
PDLIM5-222ENST00000615540 H0Y9P7 68 aa5.82□□□□□ -1.48
PDLIM5-222ENST00000615540 LINC00528Q8N1L1 170 aa5.82□□□□□ -1.48
PDLIM5-222ENST00000615540 TMEM254Q8TBM7 123 aa5.82□□□□□ -1.48
PDLIM5-222ENST00000615540 KCNQ1DNQ9H478 68 aa5.81□□□□□ -1.48
PDLIM5-222ENST00000615540 A0A0U1RQV1 116 aa5.81□□□□□ -1.48
PDLIM5-222ENST00000615540 USP24Q9UPU5 2620 aa5.81□□□□□ -1.48
PDLIM5-222ENST00000615540 ATP5EP56381 51 aaPredicted RBP5.79□□□□□ -1.48
PDLIM5-222ENST00000615540 Q8N377 158 aa5.79□□□□□ -1.48
PDLIM5-222ENST00000615540 SERP1Q9Y6X1 66 aa5.79□□□□□ -1.48
PDLIM5-222ENST00000615540 ERC2-IT1O76042 136 aa5.79□□□□□ -1.48
PDLIM5-222ENST00000615540 APLNQ9ULZ1 77 aa5.79□□□□□ -1.48
PDLIM5-222ENST00000615540 CHD6Q8TD26 2715 aa5.78□□□□□ -1.48
PDLIM5-222ENST00000615540 Q8NBF4 154 aa5.78□□□□□ -1.48
PDLIM5-222ENST00000615540 K7EQZ3 153 aa5.78□□□□□ -1.48
PDLIM5-222ENST00000615540 ZANQ9Y493 2812 aa5.78□□□□□ -1.48
PDLIM5-222ENST00000615540 BCE1O60756 84 aa5.77□□□□□ -1.49
PDLIM5-222ENST00000615540 ANAPC11Q9NYG5 84 aa5.77□□□□□ -1.49
PDLIM5-222ENST00000615540 SPTSSBQ8NFR3 76 aa5.77□□□□□ -1.49
PDLIM5-222ENST00000615540 CRYGAP11844 174 aa5.77□□□□□ -1.49
PDLIM5-222ENST00000615540 IGFL1Q6UW32 110 aa5.77□□□□□ -1.49
PDLIM5-222ENST00000615540 FLNCQ14315 2725 aa5.76□□□□□ -1.49
PDLIM5-222ENST00000615540 TRRAPQ9Y4A5 3859 aa5.76□□□□□ -1.49
PDLIM5-222ENST00000615540 NBEAL2Q6ZNJ1 2754 aa5.75□□□□□ -1.49
PDLIM5-222ENST00000615540 TLX1NBP0CAT3 122 aa5.74□□□□□ -1.49
PDLIM5-222ENST00000615540 ANK3Q12955 4377 aaKnown RBP5.74□□□□□ -1.49
PDLIM5-222ENST00000615540 C1orf64Q8NEQ6 169 aa5.74□□□□□ -1.49
PDLIM5-222ENST00000615540 SPACA4Q8TDM5 124 aa5.74□□□□□ -1.49
PDLIM5-222ENST00000615540 PSPHP1O15172 72 aa5.73□□□□□ -1.49
PDLIM5-222ENST00000615540 CSMD3Q7Z407 3707 aa5.73□□□□□ -1.49
PDLIM5-222ENST00000615540 hDV103S1A0JD37 113 aa5.73□□□□□ -1.49
PDLIM5-222ENST00000615540 TRBV7-4A0A0J9YYF1 115 aa5.72□□□□□ -1.49
PDLIM5-222ENST00000615540 PRR15LQ9BU68 103 aa5.72□□□□□ -1.49
PDLIM5-222ENST00000615540 A0A087WTM6 91 aa5.72□□□□□ -1.49
PDLIM5-222ENST00000615540 C4orf26Q17RF5 130 aa5.72□□□□□ -1.49
PDLIM5-222ENST00000615540 OBSCN-AS1Q96MR7 158 aa5.71□□□□□ -1.49
PDLIM5-222ENST00000615540 PLA2G2DQ9UNK4 145 aa5.71□□□□□ -1.49
PDLIM5-222ENST00000615540 SMIM26A0A096LP01 95 aa5.71□□□□□ -1.5
PDLIM5-222ENST00000615540 WIPF1O43516 503 aa5.7□□□□□ -1.5
PDLIM5-222ENST00000615540 SEC61GP60059 68 aa5.69□□□□□ -1.5
PDLIM5-222ENST00000615540 WWC2-AS2Q96NR7 200 aa5.68□□□□□ -1.5
PDLIM5-222ENST00000615540 A0A1W2PNM2 257 aa5.68□□□□□ -1.5
PDLIM5-222ENST00000615540 A6NED7 52 aa5.68□□□□□ -1.5
PDLIM5-222ENST00000615540 SPINK1P00995 79 aa5.67□□□□□ -1.5
PDLIM5-222ENST00000615540 F8P00451 2351 aa5.67□□□□□ -1.5
PDLIM5-222ENST00000615540 CNBPP62633 177 aaKnown RBP5.67□□□□□ -1.5
PDLIM5-222ENST00000615540 TEP1Q99973 2627 aaKnown RBP5.67□□□□□ -1.5
PDLIM5-222ENST00000615540 C9orf163Q8N9P6 203 aa5.67□□□□□ -1.5
PDLIM5-222ENST00000615540 IGKV2D-30A0A075B6S6 120 aa5.66□□□□□ -1.5
PDLIM5-222ENST00000615540 SMR3BP02814 79 aaPredicted RBP5.66□□□□□ -1.5
PDLIM5-222ENST00000615540 IGKV2-30P06310 120 aa5.66□□□□□ -1.5
PDLIM5-222ENST00000615540 A8MWP4 228 aa5.66□□□□□ -1.5
PDLIM5-222ENST00000615540 KRTAP1-5Q9BYS1 174 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms