RNA–Protein interactions for RNA: ENST00000613988.4

CBWD1-223, Transcript of COBW domain containing 1, human

TSL 2

Gene CBWD1, Length 1,381 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBWD1-223	ENST00000613988	GAGE2D	Q9UEU5	116 aa		13.47	□□□□□ -0.25
CBWD1-223	ENST00000613988		H3BUT2	72 aa		13.46	□□□□□ -0.25
CBWD1-223	ENST00000613988	RPL13A	P40429	203 aa	Known RBP	13.45	□□□□□ -0.26
CBWD1-223	ENST00000613988	REG3G	Q6UW15	175 aa		13.45	□□□□□ -0.26
CBWD1-223	ENST00000613988	TRBV10-2	A0A0K0K1G8	114 aa		13.45	□□□□□ -0.26
CBWD1-223	ENST00000613988		A0A1B0GV90	55 aa		13.45	□□□□□ -0.26
CBWD1-223	ENST00000613988		A0A1W2PNN7	141 aa		13.45	□□□□□ -0.26
CBWD1-223	ENST00000613988	LINC00337	Q8N6G1	96 aa		13.44	□□□□□ -0.26
CBWD1-223	ENST00000613988		A0A1W2PPM0	123 aa		13.43	□□□□□ -0.26
CBWD1-223	ENST00000613988		Q1RN00	199 aa		13.43	□□□□□ -0.26
CBWD1-223	ENST00000613988	C9orf129	Q5T035	196 aa	Known RBP	13.42	□□□□□ -0.26
CBWD1-223	ENST00000613988		H7C2G1	150 aa		13.41	□□□□□ -0.26
CBWD1-223	ENST00000613988	VPREB1	P12018	145 aa		13.41	□□□□□ -0.26
CBWD1-223	ENST00000613988	FABP2	P12104	132 aa		13.41	□□□□□ -0.26
CBWD1-223	ENST00000613988	LYRM7	Q5U5X0	104 aa		13.41	□□□□□ -0.26
CBWD1-223	ENST00000613988		Q8NDZ9	215 aa		13.41	□□□□□ -0.26
CBWD1-223	ENST00000613988	NAA38	Q9BRA0	125 aa	Known RBP	13.4	□□□□□ -0.26
CBWD1-223	ENST00000613988	TMEM126A	Q9H061	195 aa		13.4	□□□□□ -0.26
CBWD1-223	ENST00000613988	OR13C6P	Q8NH95	151 aa		13.39	□□□□□ -0.27
CBWD1-223	ENST00000613988	PSMB2	P49721	201 aa		13.38	□□□□□ -0.27
CBWD1-223	ENST00000613988	KRTAP10-8	P60410	259 aa		13.38	□□□□□ -0.27
CBWD1-223	ENST00000613988	NCR3	O14931	201 aa		13.37	□□□□□ -0.27
CBWD1-223	ENST00000613988	VAMP3	Q15836	100 aa		13.37	□□□□□ -0.27
CBWD1-223	ENST00000613988	PSORS1C2	Q9UIG4	136 aa		13.37	□□□□□ -0.27
CBWD1-223	ENST00000613988	IGLV5-37	A0A075B6J1	123 aa		13.36	□□□□□ -0.27
CBWD1-223	ENST00000613988		M0R378	163 aa		13.36	□□□□□ -0.27
CBWD1-223	ENST00000613988	S100A7L2	Q5SY68	101 aa		13.36	□□□□□ -0.27
CBWD1-223	ENST00000613988	PHF5A	Q7RTV0	110 aa	Known RBP	13.36	□□□□□ -0.27
CBWD1-223	ENST00000613988	COX6C	P09669	75 aa		13.35	□□□□□ -0.27
CBWD1-223	ENST00000613988	RPL28	P46779	137 aa	Known RBP	13.35	□□□□□ -0.27
CBWD1-223	ENST00000613988	LRP2	P98164	4655 aa		13.35	□□□□□ -0.27
CBWD1-223	ENST00000613988	CBY1	Q9Y3M2	126 aa		13.34	□□□□□ -0.27
CBWD1-223	ENST00000613988	TRIAP1	O43715	76 aa		13.33	□□□□□ -0.27
CBWD1-223	ENST00000613988	IGLV6-57	P01721	117 aa		13.33	□□□□□ -0.27
CBWD1-223	ENST00000613988	NKAPP1	Q8N9T2	125 aa		13.33	□□□□□ -0.27
CBWD1-223	ENST00000613988	SCGB1C2	P0DMR2	95 aa		13.32	□□□□□ -0.28
CBWD1-223	ENST00000613988	C1orf137	Q5JT78	98 aa		13.32	□□□□□ -0.28
CBWD1-223	ENST00000613988	GTF2H5	Q6ZYL4	71 aa		13.32	□□□□□ -0.28
CBWD1-223	ENST00000613988	SMIM11B	Q8TCY0	68 aa		13.32	□□□□□ -0.28
CBWD1-223	ENST00000613988	SPCS1	Q9Y6A9	102 aa		13.32	□□□□□ -0.28
CBWD1-223	ENST00000613988	TRBV20-1	A0A075B6N2	111 aa		13.31	□□□□□ -0.28
CBWD1-223	ENST00000613988	GAGE10	A6NGK3	116 aa		13.3	□□□□□ -0.28
CBWD1-223	ENST00000613988		K7EP34	96 aa		13.3	□□□□□ -0.28
CBWD1-223	ENST00000613988	FAM168B	A1KXE4	195 aa		13.29	□□□□□ -0.28
CBWD1-223	ENST00000613988	TRBV10-3	A0A0K0K1G6	114 aa		13.28	□□□□□ -0.28
CBWD1-223	ENST00000613988	UBE2V1	Q13404	147 aa		13.26	□□□□□ -0.29
CBWD1-223	ENST00000613988	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	13.26	□□□□□ -0.29
CBWD1-223	ENST00000613988	RNF213	Q63HN8	5207 aa		13.26	□□□□□ -0.29
CBWD1-223	ENST00000613988		H0YGX0	51 aa		13.25	□□□□□ -0.29
CBWD1-223	ENST00000613988	KRTAP7-1	Q8IUC3	87 aa		13.25	□□□□□ -0.29
CBWD1-223	ENST00000613988	C22orf24	Q9Y442	160 aa		13.25	□□□□□ -0.29
CBWD1-223	ENST00000613988	IGLV7-43	P04211	117 aa		13.24	□□□□□ -0.29
CBWD1-223	ENST00000613988	TRAV23DV6	A0A075B6W5	121 aa		13.23	□□□□□ -0.29
CBWD1-223	ENST00000613988	MRPL55	Q7Z7F7	128 aa	Known RBP	13.23	□□□□□ -0.29
CBWD1-223	ENST00000613988	TCL1B	O95988	128 aa		13.22	□□□□□ -0.29
CBWD1-223	ENST00000613988	ATXN8	Q156A1	80 aa		13.22	□□□□□ -0.29
CBWD1-223	ENST00000613988	DIRC1	Q969H9	104 aa		13.22	□□□□□ -0.29
CBWD1-223	ENST00000613988	KRTAP11-1	Q8IUC1	163 aa		13.21	□□□□□ -0.29
CBWD1-223	ENST00000613988	KCNQ1DN	Q9H478	68 aa		13.2	□□□□□ -0.3
CBWD1-223	ENST00000613988	TRBV7-6	A0A0J9YX20	115 aa		13.2	□□□□□ -0.3
CBWD1-223	ENST00000613988		M0QXV9	152 aa		13.2	□□□□□ -0.3
CBWD1-223	ENST00000613988	C6orf99	Q4VX62	202 aa		13.2	□□□□□ -0.3
CBWD1-223	ENST00000613988	LINC00167	Q96N53	147 aa		13.2	□□□□□ -0.3
CBWD1-223	ENST00000613988	IGLV1-50	A0A075B6I6	118 aa		13.19	□□□□□ -0.3
CBWD1-223	ENST00000613988	LST1	O00453	97 aa		13.19	□□□□□ -0.3
CBWD1-223	ENST00000613988	ZNF73	O43830	326 aa	Predicted RBP	13.19	□□□□□ -0.3
CBWD1-223	ENST00000613988	UBE2B	P63146	152 aa		13.19	□□□□□ -0.3
CBWD1-223	ENST00000613988	PRY	O14603	147 aa		13.18	□□□□□ -0.3
CBWD1-223	ENST00000613988	CLEC2B	Q92478	149 aa		13.18	□□□□□ -0.3
CBWD1-223	ENST00000613988		H3BMG7	143 aa		13.17	□□□□□ -0.3
CBWD1-223	ENST00000613988		H0Y9J4	135 aa		13.16	□□□□□ -0.3
CBWD1-223	ENST00000613988		A0A1B0GX51	115 aa		13.15	□□□□□ -0.3
CBWD1-223	ENST00000613988	PRR26	Q8N8Z3	221 aa		13.15	□□□□□ -0.3
CBWD1-223	ENST00000613988	TRAC	P01848	142 aa		13.14	□□□□□ -0.31
CBWD1-223	ENST00000613988	RPL37AP8	A6NKH3	93 aa		13.12	□□□□□ -0.31
CBWD1-223	ENST00000613988	SNCG	O76070	127 aa		13.12	□□□□□ -0.31
CBWD1-223	ENST00000613988	COX7B	P24311	80 aa		13.11	□□□□□ -0.31
CBWD1-223	ENST00000613988	SPRR1A	P35321	89 aa		13.11	□□□□□ -0.31
CBWD1-223	ENST00000613988	FAM218A	Q96MZ4	157 aa		13.11	□□□□□ -0.31
CBWD1-223	ENST00000613988		F8W1H4	67 aa		13.1	□□□□□ -0.31
CBWD1-223	ENST00000613988	ELOF1	P60002	83 aa	Known RBP	13.1	□□□□□ -0.31
CBWD1-223	ENST00000613988	LINC00575	Q6W349	94 aa		13.08	□□□□□ -0.31
CBWD1-223	ENST00000613988		C9JAW5	83 aa		13.07	□□□□□ -0.32
CBWD1-223	ENST00000613988	SLC25A20	O43772	301 aa		13.07	□□□□□ -0.32
CBWD1-223	ENST00000613988	PRO0461	Q9UI25	63 aa		13.07	□□□□□ -0.32
CBWD1-223	ENST00000613988	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	13.06	□□□□□ -0.32
CBWD1-223	ENST00000613988	DNAL4	O96015	105 aa		13.06	□□□□□ -0.32
CBWD1-223	ENST00000613988	KRTAP1-4	P0C5Y4	121 aa		13.06	□□□□□ -0.32
CBWD1-223	ENST00000613988	ETDC	A0A1B0GVM5	59 aa		13.05	□□□□□ -0.32
CBWD1-223	ENST00000613988	LPA	P08519	4548 aa		13.04	□□□□□ -0.32
CBWD1-223	ENST00000613988	hADV29S1	A0JD25	119 aa		13.04	□□□□□ -0.32
CBWD1-223	ENST00000613988		B5MCH6	92 aa		13.02	□□□□□ -0.33
CBWD1-223	ENST00000613988		H3BT86	120 aa		13.02	□□□□□ -0.33
CBWD1-223	ENST00000613988	ZNF861P	O60384	105 aa		13.02	□□□□□ -0.33
CBWD1-223	ENST00000613988		Q6ZRX8	168 aa		13.02	□□□□□ -0.33
CBWD1-223	ENST00000613988	DHRS4-AS1	Q9P1J3	65 aa		13	□□□□□ -0.33
CBWD1-223	ENST00000613988	MTURN	Q8N3F0	131 aa		12.99	□□□□□ -0.33
CBWD1-223	ENST00000613988	SMCP	P49901	116 aa	Predicted RBP	12.98	□□□□□ -0.33
CBWD1-223	ENST00000613988	ANKRD29	Q8N6D5	301 aa		12.98	□□□□□ -0.33
CBWD1-223	ENST00000613988		H3BQ85	93 aa		12.97	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms