RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 TRBV10-2A0A0K0K1G8 114 aa6.4□□□□□ -1.38
SYNE1-240ENST00000610489 RPL37AP8A6NKH3 93 aa6.4□□□□□ -1.38
SYNE1-240ENST00000610489 KRTAP10-4P60372 401 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-240ENST00000610489 MUSTN1Q8IVN3 82 aa6.4□□□□□ -1.38
SYNE1-240ENST00000610489 CEND1Q8N111 149 aa6.4□□□□□ -1.38
SYNE1-240ENST00000610489 A6NDN8 102 aa6.39□□□□□ -1.39
SYNE1-240ENST00000610489 IGLV1-50A0A075B6I6 118 aa6.39□□□□□ -1.39
SYNE1-240ENST00000610489 IGKV2-28A0A075B6P5 120 aa6.39□□□□□ -1.39
SYNE1-240ENST00000610489 IGKV2D-28P01615 120 aa6.39□□□□□ -1.39
SYNE1-240ENST00000610489 HIST1H4GQ99525 98 aa6.39□□□□□ -1.39
SYNE1-240ENST00000610489 C1orf137Q5JT78 98 aa6.38□□□□□ -1.39
SYNE1-240ENST00000610489 KRTAP4-5Q9BYR2 181 aa6.38□□□□□ -1.39
SYNE1-240ENST00000610489 TRBV10-3A0A0K0K1G6 114 aa6.37□□□□□ -1.39
SYNE1-240ENST00000610489 TAX1BP3O14907 124 aa6.37□□□□□ -1.39
SYNE1-240ENST00000610489 FXYD2P54710 66 aa6.36□□□□□ -1.39
SYNE1-240ENST00000610489 KRTAP23-1A1A580 65 aa6.36□□□□□ -1.39
SYNE1-240ENST00000610489 IGLV6-57P01721 117 aa6.36□□□□□ -1.39
SYNE1-240ENST00000610489 S100A7L2Q5SY68 101 aa6.36□□□□□ -1.39
SYNE1-240ENST00000610489 FLG2Q5D862 2391 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-240ENST00000610489 PRYO14603 147 aa6.35□□□□□ -1.39
SYNE1-240ENST00000610489 REG3GQ6UW15 175 aa6.35□□□□□ -1.39
SYNE1-240ENST00000610489 LINC00337Q8N6G1 96 aa6.35□□□□□ -1.39
SYNE1-240ENST00000610489 TMEM126AQ9H061 195 aa6.35□□□□□ -1.39
SYNE1-240ENST00000610489 A0A1B0GWB2 263 aa6.34□□□□□ -1.39
SYNE1-240ENST00000610489 A4D1N5 150 aa6.34□□□□□ -1.39
SYNE1-240ENST00000610489 BCE1O60756 84 aa6.34□□□□□ -1.39
SYNE1-240ENST00000610489 KCNQ1DNQ9H478 68 aa6.34□□□□□ -1.39
SYNE1-240ENST00000610489 IGLV7-43P04211 117 aa6.34□□□□□ -1.4
SYNE1-240ENST00000610489 OR13C6PQ8NH95 151 aa6.34□□□□□ -1.4
SYNE1-240ENST00000610489 ABCA13Q86UQ4 5058 aa6.33□□□□□ -1.4
SYNE1-240ENST00000610489 SPRR1AP35321 89 aa6.32□□□□□ -1.4
SYNE1-240ENST00000610489 NHP2Q9NX24 153 aaKnown RBP6.32□□□□□ -1.4
SYNE1-240ENST00000610489 TRAV23DV6A0A075B6W5 121 aa6.31□□□□□ -1.4
SYNE1-240ENST00000610489 TRAV13-2A0A0B4J235 113 aa6.31□□□□□ -1.4
SYNE1-240ENST00000610489 CBY1Q9Y3M2 126 aa6.31□□□□□ -1.4
SYNE1-240ENST00000610489 KRTAP4-16G5E9R7 235 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-240ENST00000610489 FAM19A1Q7Z5A9 133 aa6.31□□□□□ -1.4
SYNE1-240ENST00000610489 KRTAP13-1Q8IUC0 172 aa6.31□□□□□ -1.4
SYNE1-240ENST00000610489 ZNF861PO60384 105 aa6.3□□□□□ -1.4
SYNE1-240ENST00000610489 INAFM2P0DMQ5 153 aa6.3□□□□□ -1.4
SYNE1-240ENST00000610489 RPL28P46779 137 aaKnown RBP6.3□□□□□ -1.4
SYNE1-240ENST00000610489 UBE2AP49459 152 aa6.3□□□□□ -1.4
SYNE1-240ENST00000610489 SPINK6Q6UWN8 80 aa6.3□□□□□ -1.4
SYNE1-240ENST00000610489 MYCBP2O75592 4640 aa6.3□□□□□ -1.4
SYNE1-240ENST00000610489 ETDCA0A1B0GVM5 59 aa6.29□□□□□ -1.4
SYNE1-240ENST00000610489 ZNF73O43830 326 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-240ENST00000610489 PRLHP81277 87 aa6.29□□□□□ -1.4
SYNE1-240ENST00000610489 RAB37Q96AX2 223 aa6.29□□□□□ -1.4
SYNE1-240ENST00000610489 CFC1BP0CG36 223 aa6.29□□□□□ -1.4
SYNE1-240ENST00000610489 CFC1P0CG37 223 aa6.29□□□□□ -1.4
SYNE1-240ENST00000610489 A0A0B4J2C4 111 aa6.28□□□□□ -1.4
SYNE1-240ENST00000610489 K7ERJ3 54 aa6.28□□□□□ -1.4
SYNE1-240ENST00000610489 DIRC1Q969H9 104 aa6.28□□□□□ -1.4
SYNE1-240ENST00000610489 H0Y9J4 135 aa6.27□□□□□ -1.41
SYNE1-240ENST00000610489 H3BUT2 72 aa6.27□□□□□ -1.41
SYNE1-240ENST00000610489 RPL13AP40429 203 aaKnown RBP6.27□□□□□ -1.41
SYNE1-240ENST00000610489 FAT3Q8TDW7 4589 aa6.27□□□□□ -1.41
SYNE1-240ENST00000610489 A0A1W2PPM0 123 aa6.26□□□□□ -1.41
SYNE1-240ENST00000610489 UBE2V1Q13404 147 aa6.26□□□□□ -1.41
SYNE1-240ENST00000610489 VAMP3Q15836 100 aa6.26□□□□□ -1.41
SYNE1-240ENST00000610489 C6orf99Q4VX62 202 aa6.26□□□□□ -1.41
SYNE1-240ENST00000610489 Q6ZRX8 168 aa6.26□□□□□ -1.41
SYNE1-240ENST00000610489 SMIM11BQ8TCY0 68 aa6.26□□□□□ -1.41
SYNE1-240ENST00000610489 LRP1Q07954 4544 aaKnown RBP6.26□□□□□ -1.41
SYNE1-240ENST00000610489 PRO1854Q9UHT4 67 aa6.26□□□□□ -1.41
SYNE1-240ENST00000610489 PCLOQ9Y6V0 5065 aa6.25□□□□□ -1.41
SYNE1-240ENST00000610489 HIGD2AQ9BW72 106 aa6.25□□□□□ -1.41
SYNE1-240ENST00000610489 FABP2P12104 132 aa6.24□□□□□ -1.41
SYNE1-240ENST00000610489 TRBV7-6A0A0J9YX20 115 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 ELOF1P60002 83 aaKnown RBP6.23□□□□□ -1.41
SYNE1-240ENST00000610489 SMCR5Q8TEV8 140 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 NAA38Q9BRA0 125 aaKnown RBP6.23□□□□□ -1.41
SYNE1-240ENST00000610489 Q9BRP9 147 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 H7C2G1 150 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 K7EP34 96 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 TSPAN13O95857 204 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 COX7BP24311 80 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 GTF2H5Q6ZYL4 71 aa6.23□□□□□ -1.41
SYNE1-240ENST00000610489 A0A0A0MQY5 61 aa6.21□□□□□ -1.41
SYNE1-240ENST00000610489 SPCS1Q9Y6A9 102 aa6.21□□□□□ -1.41
SYNE1-240ENST00000610489 DMBT1Q9UGM3 2413 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-240ENST00000610489 ERC2-IT1O76042 136 aa6.21□□□□□ -1.42
SYNE1-240ENST00000610489 KRTAP1-4P0C5Y4 121 aa6.21□□□□□ -1.42
SYNE1-240ENST00000610489 Q1RN00 199 aa6.21□□□□□ -1.42
SYNE1-240ENST00000610489 LYRM7Q5U5X0 104 aa6.2□□□□□ -1.42
SYNE1-240ENST00000610489 DHRS4-AS1Q9P1J3 65 aa6.2□□□□□ -1.42
SYNE1-240ENST00000610489 TNXBP22105 4242 aa6.19□□□□□ -1.42
SYNE1-240ENST00000610489 OXTP01178 125 aa6.18□□□□□ -1.42
SYNE1-240ENST00000610489 SPRR4Q96PI1 79 aa6.18□□□□□ -1.42
SYNE1-240ENST00000610489 ZNF706Q9Y5V0 76 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-240ENST00000610489 KRTAP29-1A8MX34 341 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-240ENST00000610489 LINC01600Q96MT4 127 aa6.18□□□□□ -1.42
SYNE1-240ENST00000610489 TRBV20-1A0A075B6N2 111 aa6.17□□□□□ -1.42
SYNE1-240ENST00000610489 LINC00575Q6W349 94 aa6.16□□□□□ -1.42
SYNE1-240ENST00000610489 SLC25A20O43772 301 aa6.16□□□□□ -1.42
SYNE1-240ENST00000610489 FAM229BQ4G0N7 80 aa6.16□□□□□ -1.42
SYNE1-240ENST00000610489 ST20-AS1Q8NBB2 130 aa6.16□□□□□ -1.42
SYNE1-240ENST00000610489 ANAPC11Q9NYG5 84 aa6.16□□□□□ -1.42
SYNE1-240ENST00000610489 H0YGX0 51 aa6.15□□□□□ -1.43
SYNE1-240ENST00000610489 PSMB2P49721 201 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms