RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 A0A1B0GWB2 263 aa5.88□□□□□ -1.47
TRIM28-208ENST00000597172 MRPL55Q7Z7F7 128 aaKnown RBP5.88□□□□□ -1.47
TRIM28-208ENST00000597172 GAGE10A6NGK3 116 aa5.87□□□□□ -1.47
TRIM28-208ENST00000597172 M0QXV9 152 aa5.87□□□□□ -1.47
TRIM28-208ENST00000597172 M0R143 59 aa5.87□□□□□ -1.47
TRIM28-208ENST00000597172 MT1HL1P0DM35 61 aa5.87□□□□□ -1.47
TRIM28-208ENST00000597172 KRTAP11-1Q8IUC1 163 aa5.87□□□□□ -1.47
TRIM28-208ENST00000597172 NKAPP1Q8N9T2 125 aa5.87□□□□□ -1.47
TRIM28-208ENST00000597172 NHP2Q9NX24 153 aaKnown RBP5.87□□□□□ -1.47
TRIM28-208ENST00000597172 IGLV1-50A0A075B6I6 118 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 A0A0B4J2C4 111 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 TRBV10-3A0A0K0K1G6 114 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 TMEM238LA0A1B0GVL6 79 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 A6NJY4 79 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 RPL37AP8A6NKH3 93 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 K7ERJ3 54 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 IGLV6-57P01721 117 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 KRTAP10-4P60372 401 aaPredicted RBP5.86□□□□□ -1.47
TRIM28-208ENST00000597172 SNHG12Q9BXW3 62 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 CRCT1Q9UGL9 99 aa5.86□□□□□ -1.47
TRIM28-208ENST00000597172 TRAV13-2A0A0B4J235 113 aa5.85□□□□□ -1.47
TRIM28-208ENST00000597172 A6NDN8 102 aa5.85□□□□□ -1.47
TRIM28-208ENST00000597172 BATFQ16520 125 aa5.85□□□□□ -1.47
TRIM28-208ENST00000597172 LBHQ53QV2 105 aaPredicted RBP5.85□□□□□ -1.47
TRIM28-208ENST00000597172 OR13C6PQ8NH95 151 aa5.85□□□□□ -1.47
TRIM28-208ENST00000597172 S100A7L2Q5SY68 101 aa5.84□□□□□ -1.47
TRIM28-208ENST00000597172 RAB37Q96AX2 223 aa5.84□□□□□ -1.47
TRIM28-208ENST00000597172 TMEM126AQ9H061 195 aa5.84□□□□□ -1.47
TRIM28-208ENST00000597172 PRO1854Q9UHT4 67 aa5.84□□□□□ -1.47
TRIM28-208ENST00000597172 RPL13AP40429 203 aaKnown RBP5.83□□□□□ -1.48
TRIM28-208ENST00000597172 KCNQ1DNQ9H478 68 aa5.83□□□□□ -1.48
TRIM28-208ENST00000597172 A0A0U1RQV1 116 aa5.82□□□□□ -1.48
TRIM28-208ENST00000597172 SMIM11BQ8TCY0 68 aa5.82□□□□□ -1.48
TRIM28-208ENST00000597172 LPAP08519 4548 aa5.81□□□□□ -1.48
TRIM28-208ENST00000597172 H7C2G1 150 aa5.81□□□□□ -1.48
TRIM28-208ENST00000597172 UBE2BP63146 152 aa5.81□□□□□ -1.48
TRIM28-208ENST00000597172 TRAV23DV6A0A075B6W5 121 aa5.8□□□□□ -1.48
TRIM28-208ENST00000597172 KRTAP4-16G5E9R7 235 aaPredicted RBP5.8□□□□□ -1.48
TRIM28-208ENST00000597172 PRYO14603 147 aa5.8□□□□□ -1.48
TRIM28-208ENST00000597172 TAX1BP3O14907 124 aa5.8□□□□□ -1.48
TRIM28-208ENST00000597172 TSPAN13O95857 204 aa5.8□□□□□ -1.48
TRIM28-208ENST00000597172 SPRR1AP35321 89 aa5.8□□□□□ -1.48
TRIM28-208ENST00000597172 PSORS1C2Q9UIG4 136 aa5.8□□□□□ -1.48
TRIM28-208ENST00000597172 ZNF73O43830 326 aaPredicted RBP5.79□□□□□ -1.48
TRIM28-208ENST00000597172 RPL28P46779 137 aaKnown RBP5.79□□□□□ -1.48
TRIM28-208ENST00000597172 LCE2AQ5TA79 106 aaPredicted RBP5.79□□□□□ -1.48
TRIM28-208ENST00000597172 REG3GQ6UW15 175 aa5.79□□□□□ -1.48
TRIM28-208ENST00000597172 C6orf99Q4VX62 202 aa5.78□□□□□ -1.48
TRIM28-208ENST00000597172 B5MCH6 92 aa5.77□□□□□ -1.49
TRIM28-208ENST00000597172 TRIAP1O43715 76 aa5.77□□□□□ -1.49
TRIM28-208ENST00000597172 BCE1O60756 84 aa5.77□□□□□ -1.49
TRIM28-208ENST00000597172 Q1RN00 199 aa5.77□□□□□ -1.49
TRIM28-208ENST00000597172 COL5A1-AS1Q5SY13 56 aa5.77□□□□□ -1.49
TRIM28-208ENST00000597172 NAA38Q9BRA0 125 aaKnown RBP5.77□□□□□ -1.49
TRIM28-208ENST00000597172 TRBV7-6A0A0J9YX20 115 aa5.76□□□□□ -1.49
TRIM28-208ENST00000597172 C9orf118A6NHY6 69 aa5.76□□□□□ -1.49
TRIM28-208ENST00000597172 C1orf137Q5JT78 98 aa5.76□□□□□ -1.49
TRIM28-208ENST00000597172 DIRC1Q969H9 104 aa5.76□□□□□ -1.49
TRIM28-208ENST00000597172 CBY1Q9Y3M2 126 aa5.76□□□□□ -1.49
TRIM28-208ENST00000597172 FAM19A1Q7Z5A9 133 aa5.75□□□□□ -1.49
TRIM28-208ENST00000597172 KRTAP13-1Q8IUC0 172 aa5.75□□□□□ -1.49
TRIM28-208ENST00000597172 ETDCA0A1B0GVM5 59 aa5.74□□□□□ -1.49
TRIM28-208ENST00000597172 H3BUT2 72 aa5.74□□□□□ -1.49
TRIM28-208ENST00000597172 IGLV7-43P04211 117 aa5.74□□□□□ -1.49
TRIM28-208ENST00000597172 COX7BP24311 80 aa5.74□□□□□ -1.49
TRIM28-208ENST00000597172 PSMB2P49721 201 aa5.74□□□□□ -1.49
TRIM28-208ENST00000597172 ELOF1P60002 83 aaKnown RBP5.74□□□□□ -1.49
TRIM28-208ENST00000597172 Q9BRP9 147 aa5.74□□□□□ -1.49
TRIM28-208ENST00000597172 H0Y9J4 135 aa5.73□□□□□ -1.49
TRIM28-208ENST00000597172 RPL37AP61513 92 aaKnown RBP5.73□□□□□ -1.49
TRIM28-208ENST00000597172 PRLHP81277 87 aa5.73□□□□□ -1.49
TRIM28-208ENST00000597172 VAMP3Q15836 100 aa5.73□□□□□ -1.49
TRIM28-208ENST00000597172 Q6ZRX8 168 aa5.73□□□□□ -1.49
TRIM28-208ENST00000597172 FAM218AQ96MZ4 157 aa5.73□□□□□ -1.49
TRIM28-208ENST00000597172 H0YGX0 51 aa5.72□□□□□ -1.49
TRIM28-208ENST00000597172 ZNF861PO60384 105 aa5.72□□□□□ -1.49
TRIM28-208ENST00000597172 SCGB1C2P0DMR2 95 aa5.72□□□□□ -1.49
TRIM28-208ENST00000597172 LINC00575Q6W349 94 aa5.72□□□□□ -1.49
TRIM28-208ENST00000597172 SMCR5Q8TEV8 140 aa5.72□□□□□ -1.49
TRIM28-208ENST00000597172 A0A1W2PPM0 123 aa5.71□□□□□ -1.5
TRIM28-208ENST00000597172 ERC2-IT1O76042 136 aa5.71□□□□□ -1.5
TRIM28-208ENST00000597172 COX6CP09669 75 aa5.71□□□□□ -1.5
TRIM28-208ENST00000597172 UBE2AP49459 152 aa5.71□□□□□ -1.5
TRIM28-208ENST00000597172 CLEC2BQ92478 149 aa5.71□□□□□ -1.5
TRIM28-208ENST00000597172 LCE2DQ5TA82 110 aaPredicted RBP5.7□□□□□ -1.5
TRIM28-208ENST00000597172 TCL1BO95988 128 aa5.69□□□□□ -1.5
TRIM28-208ENST00000597172 HIGD2AQ9BW72 106 aa5.69□□□□□ -1.5
TRIM28-208ENST00000597172 DHRS4-AS1Q9P1J3 65 aa5.69□□□□□ -1.5
TRIM28-208ENST00000597172 hADV29S1A0JD25 119 aa5.68□□□□□ -1.5
TRIM28-208ENST00000597172 LST1O00453 97 aa5.68□□□□□ -1.5
TRIM28-208ENST00000597172 A0A1B0GX51 115 aa5.67□□□□□ -1.5
TRIM28-208ENST00000597172 FABP2P12104 132 aa5.67□□□□□ -1.5
TRIM28-208ENST00000597172 ST20-AS1Q8NBB2 130 aa5.67□□□□□ -1.5
TRIM28-208ENST00000597172 SLC25A20O43772 301 aa5.66□□□□□ -1.5
TRIM28-208ENST00000597172 LINC01547P58512 204 aaPredicted RBP5.66□□□□□ -1.5
TRIM28-208ENST00000597172 SPINK6Q6UWN8 80 aa5.66□□□□□ -1.5
TRIM28-208ENST00000597172 TRBV20-1A0A075B6N2 111 aa5.65□□□□□ -1.5
TRIM28-208ENST00000597172 TRACP01848 142 aa5.65□□□□□ -1.5
TRIM28-208ENST00000597172 ATXN8Q156A1 80 aa5.65□□□□□ -1.5
TRIM28-208ENST00000597172 LYRM7Q5U5X0 104 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms