RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 Q6ZTI0 123 aa2.83□□□□□ -1.96
SS18-223ENST00000583595 SPTSSBQ8NFR3 76 aa2.83□□□□□ -1.96
SS18-223ENST00000583595 DEFB104AQ8WTQ1 72 aa2.83□□□□□ -1.96
SS18-223ENST00000583595 HIGD2AQ9BW72 106 aa2.83□□□□□ -1.96
SS18-223ENST00000583595 CDC42SE1Q9NRR8 79 aa2.83□□□□□ -1.96
SS18-223ENST00000583595 MYO18BQ8IUG5 2567 aa2.83□□□□□ -1.96
SS18-223ENST00000583595 IGLV4-60A0A075B6I1 120 aa2.82□□□□□ -1.96
SS18-223ENST00000583595 TRBV6-4A0A1B0GX49 114 aa2.82□□□□□ -1.96
SS18-223ENST00000583595 NDUFB1O75438 58 aa2.82□□□□□ -1.96
SS18-223ENST00000583595 DEFB114Q30KQ6 69 aa2.82□□□□□ -1.96
SS18-223ENST00000583595 FAM74A4Q5TZK3 123 aa2.82□□□□□ -1.96
SS18-223ENST00000583595 ZCCHC13Q8WW36 166 aaKnown RBP2.82□□□□□ -1.96
SS18-223ENST00000583595 TTTY12Q9BZ98 90 aa2.82□□□□□ -1.96
SS18-223ENST00000583595 PIEZO2Q9H5I5 2752 aa2.82□□□□□ -1.96
SS18-223ENST00000583595 TLN1Q9Y490 2541 aaKnown RBP2.81□□□□□ -1.96
SS18-223ENST00000583595 LOC101927531A0A1B0GV80 90 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 LRCOL1A6NCL2 159 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 CCL18P55774 89 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 COX6A2Q02221 97 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 KRTAP25-1Q3LHN0 102 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 ASB16-AS1Q495Z4 193 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 LINC01554Q52M75 96 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 CNEP1R1Q8N9A8 125 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 Q8NAQ8 132 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 MUC7Q8TAX7 377 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 Q9BRP9 147 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 COL6A6A6NMZ7 2263 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 AHCTF1Q8WYP5 2266 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 PTPN13Q12923 2485 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 NAV2Q8IVL1 2488 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 LRRK2Q5S007 2527 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 MGAQ8IWI9 3026 aa2.81□□□□□ -1.96
SS18-223ENST00000583595 UBR5O95071 2799 aaPredicted RBP2.8□□□□□ -1.96
SS18-223ENST00000583595 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.8□□□□□ -1.96
SS18-223ENST00000583595 IGKV4-1P06312 121 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 LINC00158P58513 81 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 KRTAP13-3Q3SY46 172 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 C9orf116Q5BN46 136 aaPredicted RBP2.8□□□□□ -1.96
SS18-223ENST00000583595 LCE3AQ5TA76 89 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 SPINT4Q6UDR6 99 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 COX7B2Q8TF08 81 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 LINC00467Q9BRT7 94 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 PRR15LQ9BU68 103 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 CDC42SE2Q9NRR3 84 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 KAAG1Q9UBP8 84 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 PRR14LQ5THK1 2151 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 MALRD1Q5VYJ5 2156 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 ZGRF1Q86YA3 2104 aa2.8□□□□□ -1.96
SS18-223ENST00000583595 NOTCH2Q04721 2471 aa2.79□□□□□ -1.96
SS18-223ENST00000583595 ARFGEF3Q5TH69 2177 aa2.79□□□□□ -1.96
SS18-223ENST00000583595 C3orf84H3BNL1 204 aa2.79□□□□□ -1.96
SS18-223ENST00000583595 PRM2P04554 102 aa2.79□□□□□ -1.96
SS18-223ENST00000583595 ARHGAP32A7KAX9 2087 aa2.79□□□□□ -1.96
SS18-223ENST00000583595 SEC16AO15027 2179 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 DOCK10Q96BY6 2186 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 ATMQ13315 3056 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 NAV3Q8IVL0 2385 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 A0A1B0GU33 70 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 M0R2N4 97 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 LINC00575Q6W349 94 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 FDCSPQ8NFU4 85 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 MYO9AB2RTY4 2548 aa2.78□□□□□ -1.96
SS18-223ENST00000583595 PLXNB1O43157 2135 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 SPTAN1Q13813 2472 aaKnown RBP2.77□□□□□ -1.97
SS18-223ENST00000583595 A0A096LNT2 108 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 IGHV3-73A0A0B4J1V6 119 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 ETDCA0A1B0GVM5 59 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 ODF3BA8MYP8 253 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 COX7BP24311 80 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 MINOS1Q5TGZ0 78 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 CASC2Q6XLA1 102 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 FLNCQ14315 2725 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 UNC79Q9P2D8 2635 aa2.77□□□□□ -1.97
SS18-223ENST00000583595 USP9YO00507 2555 aaPredicted RBP2.77□□□□□ -1.97
SS18-223ENST00000583595 SDK2Q58EX2 2172 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 MUC4Q99102 2169 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 TRGV2A0A075B6R0 118 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 A0A1B0GW54 56 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 NDUFA4O00483 81 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.76□□□□□ -1.97
SS18-223ENST00000583595 LINC00208Q96KT6 92 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 R4GN34 69 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 NBASA2RRP1 2371 aa2.76□□□□□ -1.97
SS18-223ENST00000583595 BOD1L1Q8NFC6 3051 aa2.75□□□□□ -1.97
SS18-223ENST00000583595 USP9XQ93008 2570 aaPredicted RBP2.75□□□□□ -1.97
SS18-223ENST00000583595 TEX15Q9BXT5 2789 aa2.75□□□□□ -1.97
SS18-223ENST00000583595 DOPEY2Q9Y3R5 2298 aa2.75□□□□□ -1.97
SS18-223ENST00000583595 H3BPC8 53 aa2.75□□□□□ -1.97
SS18-223ENST00000583595 C19orf84I3L1E1 186 aa2.75□□□□□ -1.97
SS18-223ENST00000583595 LINC01558Q9Y6Z2 57 aa2.75□□□□□ -1.97
SS18-223ENST00000583595 SPTBN1Q01082 2364 aaKnown RBP2.74□□□□□ -1.97
SS18-223ENST00000583595 PRB3Q04118 309 aaPredicted RBP2.74□□□□□ -1.97
SS18-223ENST00000583595 WFDC10AQ9H1F0 79 aa2.74□□□□□ -1.97
SS18-223ENST00000583595 TOMM7Q9P0U1 55 aa2.74□□□□□ -1.97
SS18-223ENST00000583595 BSNQ9UPA5 3926 aa2.73□□□□□ -1.97
SS18-223ENST00000583595 DOPEY1Q5JWR5 2465 aa2.73□□□□□ -1.97
SS18-223ENST00000583595 RP1L1Q8IWN7 2480 aaPredicted RBP2.73□□□□□ -1.97
SS18-223ENST00000583595 HRES1P13985 223 aa2.73□□□□□ -1.97
SS18-223ENST00000583595 DEFB1P60022 68 aa2.73□□□□□ -1.97
SS18-223ENST00000583595 COX17Q14061 63 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms