RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 DEFB104AQ8WTQ1 72 aa1.9□□□□□ -2.11
NUP88-208ENST00000574087 KAAG1Q9UBP8 84 aa1.9□□□□□ -2.11
NUP88-208ENST00000574087 FREM1Q5H8C1 2179 aa1.89□□□□□ -2.11
NUP88-208ENST00000574087 ALPK2Q86TB3 2170 aa1.89□□□□□ -2.11
NUP88-208ENST00000574087 DEFB133Q30KQ1 61 aa1.89□□□□□ -2.11
NUP88-208ENST00000574087 MINOS1Q5TGZ0 78 aa1.89□□□□□ -2.11
NUP88-208ENST00000574087 Q96NJ1 140 aa1.89□□□□□ -2.11
NUP88-208ENST00000574087 KCNQ1DNQ9H478 68 aa1.89□□□□□ -2.11
NUP88-208ENST00000574087 TOMM7Q9P0U1 55 aa1.89□□□□□ -2.11
NUP88-208ENST00000574087 KMT2BQ9UMN6 2715 aaPredicted RBP1.88□□□□□ -2.11
NUP88-208ENST00000574087 DEFB112Q30KQ8 113 aa1.88□□□□□ -2.11
NUP88-208ENST00000574087 COA5Q86WW8 74 aa1.88□□□□□ -2.11
NUP88-208ENST00000574087 C5orf56Q8N8D9 126 aa1.88□□□□□ -2.11
NUP88-208ENST00000574087 SPACA4Q8TDM5 124 aa1.88□□□□□ -2.11
NUP88-208ENST00000574087 A0A096LNT2 108 aa1.87□□□□□ -2.11
NUP88-208ENST00000574087 M0R2N4 97 aa1.87□□□□□ -2.11
NUP88-208ENST00000574087 Q6ZQY7 126 aa1.87□□□□□ -2.11
NUP88-208ENST00000574087 Q8IZM0 81 aa1.87□□□□□ -2.11
NUP88-208ENST00000574087 HMCN1Q96RW7 5635 aa1.87□□□□□ -2.11
NUP88-208ENST00000574087 TNCP24821 2201 aa1.87□□□□□ -2.11
NUP88-208ENST00000574087 USF3Q68DE3 2245 aa1.86□□□□□ -2.11
NUP88-208ENST00000574087 A0A0G2JQZ4 141 aa1.86□□□□□ -2.11
NUP88-208ENST00000574087 H3BUA1 57 aa1.86□□□□□ -2.11
NUP88-208ENST00000574087 RPL37AP61513 92 aaKnown RBP1.86□□□□□ -2.11
NUP88-208ENST00000574087 PRB3Q04118 309 aaPredicted RBP1.86□□□□□ -2.11
NUP88-208ENST00000574087 KRTAP21-2Q3LI59 83 aa1.86□□□□□ -2.11
NUP88-208ENST00000574087 USMG5Q96IX5 58 aa1.86□□□□□ -2.11
NUP88-208ENST00000574087 ZFHX2Q9C0A1 2572 aaPredicted RBP1.85□□□□□ -2.11
NUP88-208ENST00000574087 KNTC1P50748 2209 aa1.85□□□□□ -2.11
NUP88-208ENST00000574087 TRGV1A0A0A0MS02 117 aa1.85□□□□□ -2.11
NUP88-208ENST00000574087 PRB1P04280 392 aa1.85□□□□□ -2.11
NUP88-208ENST00000574087 DEFB103AP81534 67 aa1.85□□□□□ -2.11
NUP88-208ENST00000574087 RHPN1-AS1Q9BWJ2 59 aa1.85□□□□□ -2.11
NUP88-208ENST00000574087 A0A0C4DFX4 3053 aa1.83□□□□□ -2.12
NUP88-208ENST00000574087 IGLV5-48A0A075B6I7 105 aa1.83□□□□□ -2.12
NUP88-208ENST00000574087 TP53AIP1Q9HCN2 124 aa1.83□□□□□ -2.12
NUP88-208ENST00000574087 BRWD1Q9NSI6 2320 aa1.83□□□□□ -2.12
NUP88-208ENST00000574087 DEFB131BA0A096LNP1 70 aa1.82□□□□□ -2.12
NUP88-208ENST00000574087 A0A1B0GU69 56 aa1.82□□□□□ -2.12
NUP88-208ENST00000574087 INE1O15225 51 aa1.82□□□□□ -2.12
NUP88-208ENST00000574087 SPINK13Q1W4C9 94 aa1.82□□□□□ -2.12
NUP88-208ENST00000574087 BAHCC1Q9P281 2608 aa1.81□□□□□ -2.12
NUP88-208ENST00000574087 A8MTW9 85 aa1.81□□□□□ -2.12
NUP88-208ENST00000574087 ACYP2P14621 99 aa1.81□□□□□ -2.12
NUP88-208ENST00000574087 DEFB1P60022 68 aa1.81□□□□□ -2.12
NUP88-208ENST00000574087 DEFB119Q8N690 84 aa1.81□□□□□ -2.12
NUP88-208ENST00000574087 GVQW2A0A096LPI5 108 aaPredicted RBP1.8□□□□□ -2.12
NUP88-208ENST00000574087 G3V318 75 aa1.8□□□□□ -2.12
NUP88-208ENST00000574087 K7EQZ3 153 aa1.8□□□□□ -2.12
NUP88-208ENST00000574087 HTN1P15515 57 aa1.8□□□□□ -2.12
NUP88-208ENST00000574087 PCNTO95613 3336 aa1.79□□□□□ -2.12
NUP88-208ENST00000574087 F5P12259 2224 aa1.79□□□□□ -2.12
NUP88-208ENST00000574087 MED13LQ71F56 2210 aa1.79□□□□□ -2.12
NUP88-208ENST00000574087 WFDC10BQ8IUB3 73 aa1.79□□□□□ -2.12
NUP88-208ENST00000574087 WFDC13Q8IUB5 93 aa1.78□□□□□ -2.12
NUP88-208ENST00000574087 RTTNQ86VV8 2226 aa1.78□□□□□ -2.13
NUP88-208ENST00000574087 ANKRD17O75179 2603 aaKnown RBP1.77□□□□□ -2.13
NUP88-208ENST00000574087 CACNA1GO43497 2377 aa1.77□□□□□ -2.13
NUP88-208ENST00000574087 J3QKU1 62 aa1.77□□□□□ -2.13
NUP88-208ENST00000574087 LY6G6CO95867 125 aa1.77□□□□□ -2.13
NUP88-208ENST00000574087 DEFB105AQ8NG35 78 aa1.77□□□□□ -2.13
NUP88-208ENST00000574087 CCL19Q99731 98 aa1.77□□□□□ -2.13
NUP88-208ENST00000574087 U3KQA8 63 aa1.77□□□□□ -2.13
NUP88-208ENST00000574087 DEFB131AP59861 70 aa1.76□□□□□ -2.13
NUP88-208ENST00000574087 GOLGB1Q14789 3259 aaKnown RBP1.76□□□□□ -2.13
NUP88-208ENST00000574087 WDR87Q6ZQQ6 2873 aa1.75□□□□□ -2.13
NUP88-208ENST00000574087 PCOTHQ58A44 107 aa1.75□□□□□ -2.13
NUP88-208ENST00000574087 UNQ6190/PRO20217Q6UXQ8 127 aa1.75□□□□□ -2.13
NUP88-208ENST00000574087 SORL1Q92673 2214 aa1.75□□□□□ -2.13
NUP88-208ENST00000574087 NAV3Q8IVL0 2385 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 TECTAO75443 2155 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 ALMS1Q8TCU4 4167 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 LYNX1G3V0Z9 82 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 H3BUX3 64 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 ANGP03950 147 aaKnown RBP1.74□□□□□ -2.13
NUP88-208ENST00000574087 PRO3102Q9H379 93 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 C6orf48Q9UBA6 75 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 CENPFP49454 3210 aa1.74□□□□□ -2.13
NUP88-208ENST00000574087 LYNX1P0DP58 116 aa1.73□□□□□ -2.13
NUP88-208ENST00000574087 DEFB109BQ30KR1 87 aa1.73□□□□□ -2.13
NUP88-208ENST00000574087 C10orf99Q6UWK7 81 aa1.73□□□□□ -2.13
NUP88-208ENST00000574087 Q6ZRX8 168 aa1.73□□□□□ -2.13
NUP88-208ENST00000574087 PLAC4Q8WY50 150 aa1.73□□□□□ -2.13
NUP88-208ENST00000574087 NOP10Q9NPE3 64 aaKnown RBP1.73□□□□□ -2.13
NUP88-208ENST00000574087 COL6A3P12111 3177 aa1.73□□□□□ -2.13
NUP88-208ENST00000574087 CEP350Q5VT06 3117 aa1.72□□□□□ -2.13
NUP88-208ENST00000574087 KRTAP12-1P59990 96 aa1.72□□□□□ -2.13
NUP88-208ENST00000574087 KRTAP13-4Q3LI77 160 aa1.72□□□□□ -2.13
NUP88-208ENST00000574087 SSBP3-AS1Q7Z2R9 100 aa1.72□□□□□ -2.13
NUP88-208ENST00000574087 PRO0255Q9UI72 69 aa1.72□□□□□ -2.13
NUP88-208ENST00000574087 CADP27708 2225 aa1.72□□□□□ -2.13
NUP88-208ENST00000574087 ICE1Q9Y2F5 2266 aa1.71□□□□□ -2.13
NUP88-208ENST00000574087 FN1P02751 2386 aaKnown RBP1.71□□□□□ -2.14
NUP88-208ENST00000574087 MMP24-AS1A0A0U1RRL7 71 aa1.71□□□□□ -2.14
NUP88-208ENST00000574087 CLPSL2Q6UWE3 100 aa1.71□□□□□ -2.14
NUP88-208ENST00000574087 Q6ZRN7 208 aaPredicted RBP1.71□□□□□ -2.14
NUP88-208ENST00000574087 ABCA1O95477 2261 aa1.71□□□□□ -2.14
NUP88-208ENST00000574087 ASCC3Q8N3C0 2202 aaKnown RBP1.7□□□□□ -2.14
NUP88-208ENST00000574087 SPRR1AP35321 89 aa1.7□□□□□ -2.14
NUP88-208ENST00000574087 MRPL34Q9BQ48 92 aaKnown RBP1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms