RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 UBE2D1P51668 147 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 SPAG11BQ08648 103 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 SCXQ7RTU7 201 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 LINC01561Q8N1V8 128 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 AMELXQ99217 191 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 SS18L2Q9UHA2 77 aa2.34□□□□□ -2.03
NUP88-202ENST00000570937 IGKV2-24A0A0C4DH68 120 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 HSBP1O75506 76 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 ATP5LO75964 103 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 HBDP02042 147 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 CIRBPQ14011 172 aaKnown RBP2.33□□□□□ -2.04
NUP88-202ENST00000570937 BAGE3Q86Y29 109 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 C18orf32Q8TCD1 76 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 SPACA4Q8TDM5 124 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 CHCHD1Q96BP2 118 aaKnown RBP2.33□□□□□ -2.04
NUP88-202ENST00000570937 LINC00526Q96FQ7 95 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 MRPL35Q9NZE8 188 aaKnown RBP2.33□□□□□ -2.04
NUP88-202ENST00000570937 V9GYY9 64 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 APOBP04114 4563 aaKnown RBP2.33□□□□□ -2.04
NUP88-202ENST00000570937 DNAH5Q8TE73 4624 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 HSPG2P98160 4391 aa2.33□□□□□ -2.04
NUP88-202ENST00000570937 TRBV30A0A0K0K1B3 111 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 SPRR5A0A1B0GTR4 108 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 TINCRA0A1B0GVN0 87 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 A0A1B0GWB2 263 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 CXCL5P42830 114 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 KRTAP10-10P60014 251 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 RPL37AP61513 92 aaKnown RBP2.32□□□□□ -2.04
NUP88-202ENST00000570937 HAMPP81172 84 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 RPL18AQ02543 176 aaKnown RBP2.32□□□□□ -2.04
NUP88-202ENST00000570937 SFTA2Q6UW10 78 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 Q6ZRU5 148 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 FAM19A3Q7Z5A8 133 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 Q8IZM0 81 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 VAMP8Q9BV40 100 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 PLAC8Q9NZF1 115 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 TOMM7Q9P0U1 55 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 CDKN2A-AS1Q9UH64 79 aa2.32□□□□□ -2.04
NUP88-202ENST00000570937 A0A096LNI7 61 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 A0A0J9YXV3 536 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 A6NDN8 102 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 NDUFC2-KCTD14E9PQ53 114 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 F8VRH5 84 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 TRGC2P03986 189 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 TLX1NBP0CAT3 122 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 CHTF8P0CG12 524 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 HNRNPA3P51991 378 aaKnown RBP2.31□□□□□ -2.04
NUP88-202ENST00000570937 LINC00173Q6ZV60 143 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 PRO0628Q9UI54 55 aa2.31□□□□□ -2.04
NUP88-202ENST00000570937 SRRM2Q9UQ35 2752 aaKnown RBP2.3□□□□□ -2.04
NUP88-202ENST00000570937 J3KT08 172 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 IGLC3P0DOY3 106 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 KIAA0087Q14695 138 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 PMCHL1Q16048 86 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 Q6Q795 121 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 C2orf82Q6UX34 121 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 UNQ6190/PRO20217Q6UXQ8 127 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 FAM19A5Q7Z5A7 132 aaPredicted RBP2.3□□□□□ -2.04
NUP88-202ENST00000570937 COX7B2Q8TF08 81 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 IFI27L1Q96BM0 104 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 ANAPC13Q9BS18 74 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 C6orf48Q9UBA6 75 aa2.3□□□□□ -2.04
NUP88-202ENST00000570937 FAT1Q14517 4588 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 TRAV12-1A0A0B4J245 112 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 K7EP34 96 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 TAX1BP3O14907 124 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 LEPROTL1O95214 131 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 OXTP01178 125 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 SPINK8P0C7L1 97 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 PLNP26678 52 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 COX17Q14061 63 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 BATFQ16520 125 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 C9orf116Q5BN46 136 aaPredicted RBP2.29□□□□□ -2.04
NUP88-202ENST00000570937 TMEM170BQ5T4T1 132 aa2.29□□□□□ -2.04
NUP88-202ENST00000570937 IGKV2-28A0A075B6P5 120 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 A0A096LNJ9 63 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 F8W1H4 67 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 KRTAP4-16G5E9R7 235 aaPredicted RBP2.28□□□□□ -2.04
NUP88-202ENST00000570937 IGKV2D-28P01615 120 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 HERVK_113P61574 105 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 UBE2BP63146 152 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 PRR3P79522 188 aaKnown RBP2.28□□□□□ -2.04
NUP88-202ENST00000570937 SPINK6Q6UWN8 80 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 FAM19A2Q8N3H0 131 aa2.28□□□□□ -2.04
NUP88-202ENST00000570937 MYMXA0A1B0GTQ4 84 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 A0A1W2PNN7 141 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 C11orf86A6NJI1 115 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 DPM2O94777 84 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 ZNF22P17026 224 aaPredicted RBP2.27□□□□□ -2.05
NUP88-202ENST00000570937 PFN2P35080 140 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 KRTAP10-4P60372 401 aaPredicted RBP2.27□□□□□ -2.05
NUP88-202ENST00000570937 C1orf137Q5JT78 98 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 NKAPP1Q8N9T2 125 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 PMCHL2Q9BQD1 86 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 XAGE1AQ9HD64 81 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 TP73-AS1Q9UF72 201 aa2.27□□□□□ -2.05
NUP88-202ENST00000570937 TMEM223A0PJW6 202 aa2.26□□□□□ -2.05
NUP88-202ENST00000570937 C9JAW5 83 aa2.26□□□□□ -2.05
NUP88-202ENST00000570937 NUPR1O60356 82 aa2.26□□□□□ -2.05
NUP88-202ENST00000570937 LINC00158P58513 81 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 130.3 ms