RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PLAC8Q9NZF1 115 aa6.97□□□□□ -1.29
CDH3-208ENST00000569036 RPL28P46779 137 aaKnown RBP6.96□□□□□ -1.3
CDH3-208ENST00000569036 CLEC2BQ92478 149 aa6.96□□□□□ -1.3
CDH3-208ENST00000569036 KLK12Q9UKR0 248 aa6.96□□□□□ -1.3
CDH3-208ENST00000569036 FAM236AA0A1B0GUQ0 79 aa6.95□□□□□ -1.3
CDH3-208ENST00000569036 FAM236BA0A1B0GV22 79 aa6.95□□□□□ -1.3
CDH3-208ENST00000569036 H0YGX0 51 aa6.95□□□□□ -1.3
CDH3-208ENST00000569036 HIST1H4AP62805 103 aaKnown RBP6.95□□□□□ -1.3
CDH3-208ENST00000569036 RPS28P62857 69 aaKnown RBP6.95□□□□□ -1.3
CDH3-208ENST00000569036 ZNF625Q96I27 306 aaPredicted RBP6.95□□□□□ -1.3
CDH3-208ENST00000569036 MUC17Q685J3 4493 aa6.94□□□□□ -1.3
CDH3-208ENST00000569036 CRYGAP11844 174 aa6.94□□□□□ -1.3
CDH3-208ENST00000569036 C9orf153Q5TBE3 101 aa6.94□□□□□ -1.3
CDH3-208ENST00000569036 SMIM20Q8N5G0 67 aa6.94□□□□□ -1.3
CDH3-208ENST00000569036 CDKN2A-AS1Q9UH64 79 aa6.94□□□□□ -1.3
CDH3-208ENST00000569036 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.93□□□□□ -1.3
CDH3-208ENST00000569036 SMIM1B2RUZ4 78 aa6.93□□□□□ -1.3
CDH3-208ENST00000569036 COX7CP15954 63 aa6.93□□□□□ -1.3
CDH3-208ENST00000569036 S100A7L2Q5SY68 101 aa6.93□□□□□ -1.3
CDH3-208ENST00000569036 ATP5EP2Q5VTU8 51 aa6.93□□□□□ -1.3
CDH3-208ENST00000569036 TRBV6-4A0A1B0GX49 114 aa6.92□□□□□ -1.3
CDH3-208ENST00000569036 J3KT08 172 aa6.92□□□□□ -1.3
CDH3-208ENST00000569036 CRPP02741 224 aa6.92□□□□□ -1.3
CDH3-208ENST00000569036 BAALC-AS2P0C853 105 aa6.92□□□□□ -1.3
CDH3-208ENST00000569036 RPL36AP83881 106 aaKnown RBP6.92□□□□□ -1.3
CDH3-208ENST00000569036 LINC00242Q5T6M2 205 aa6.92□□□□□ -1.3
CDH3-208ENST00000569036 Q6JHZ5 121 aa6.92□□□□□ -1.3
CDH3-208ENST00000569036 RPL36ALQ969Q0 106 aaKnown RBP6.92□□□□□ -1.3
CDH3-208ENST00000569036 C1orf43Q9BWL3 253 aa6.92□□□□□ -1.3
CDH3-208ENST00000569036 MALP21145 153 aa6.91□□□□□ -1.3
CDH3-208ENST00000569036 OBSCN-AS1Q96MR7 158 aa6.91□□□□□ -1.3
CDH3-208ENST00000569036 PSORS1C2Q9UIG4 136 aa6.91□□□□□ -1.3
CDH3-208ENST00000569036 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.9□□□□□ -1.3
CDH3-208ENST00000569036 IGKV2-29A2NJV5 120 aaPredicted RBP6.9□□□□□ -1.3
CDH3-208ENST00000569036 DNAL4O96015 105 aa6.9□□□□□ -1.3
CDH3-208ENST00000569036 CHCHD5Q9BSY4 110 aa6.9□□□□□ -1.3
CDH3-208ENST00000569036 LINC00694P0DN24 101 aa6.89□□□□□ -1.31
CDH3-208ENST00000569036 TMEM258P61165 79 aa6.89□□□□□ -1.31
CDH3-208ENST00000569036 CNBPP62633 177 aaKnown RBP6.89□□□□□ -1.31
CDH3-208ENST00000569036 IGHV3-73A0A0B4J1V6 119 aa6.88□□□□□ -1.31
CDH3-208ENST00000569036 BCE1O60756 84 aa6.88□□□□□ -1.31
CDH3-208ENST00000569036 RPL18AQ02543 176 aaKnown RBP6.88□□□□□ -1.31
CDH3-208ENST00000569036 LINC01561Q8N1V8 128 aa6.88□□□□□ -1.31
CDH3-208ENST00000569036 CDC42SE2Q9NRR3 84 aa6.88□□□□□ -1.31
CDH3-208ENST00000569036 NDUFC2-KCTD14E9PQ53 114 aa6.87□□□□□ -1.31
CDH3-208ENST00000569036 ENHOQ6UWT2 76 aa6.87□□□□□ -1.31
CDH3-208ENST00000569036 PRR26Q8N8Z3 221 aa6.87□□□□□ -1.31
CDH3-208ENST00000569036 NPC2P61916 151 aa6.86□□□□□ -1.31
CDH3-208ENST00000569036 GAGE2AQ6NT46 116 aa6.86□□□□□ -1.31
CDH3-208ENST00000569036 SOSTDC1Q6X4U4 206 aa6.86□□□□□ -1.31
CDH3-208ENST00000569036 SMCR5Q8TEV8 140 aa6.86□□□□□ -1.31
CDH3-208ENST00000569036 TMEM243Q9BU79 118 aa6.86□□□□□ -1.31
CDH3-208ENST00000569036 TRBV10-3A0A0K0K1G6 114 aa6.85□□□□□ -1.31
CDH3-208ENST00000569036 JMJD7-PLA2G4BH0Y9G9 81 aa6.85□□□□□ -1.31
CDH3-208ENST00000569036 H3BQ85 93 aa6.85□□□□□ -1.31
CDH3-208ENST00000569036 RNASE13Q5GAN3 156 aaKnown RBP6.85□□□□□ -1.31
CDH3-208ENST00000569036 SERP2Q8N6R1 65 aa6.85□□□□□ -1.31
CDH3-208ENST00000569036 OR13C6PQ8NH95 151 aa6.85□□□□□ -1.31
CDH3-208ENST00000569036 COX7B2Q8TF08 81 aa6.85□□□□□ -1.31
CDH3-208ENST00000569036 UBE2L6O14933 153 aa6.84□□□□□ -1.31
CDH3-208ENST00000569036 LINC01547P58512 204 aaPredicted RBP6.84□□□□□ -1.31
CDH3-208ENST00000569036 COX6A2Q02221 97 aa6.84□□□□□ -1.31
CDH3-208ENST00000569036 C5orf47Q569G3 176 aa6.84□□□□□ -1.31
CDH3-208ENST00000569036 C2orf48Q96LS8 159 aa6.84□□□□□ -1.31
CDH3-208ENST00000569036 LINC00167Q96N53 147 aa6.84□□□□□ -1.31
CDH3-208ENST00000569036 SND1-IT1Q9HBX3 110 aa6.84□□□□□ -1.31
CDH3-208ENST00000569036 C22orf24Q9Y442 160 aa6.84□□□□□ -1.31
CDH3-208ENST00000569036 SLPIP03973 132 aa6.83□□□□□ -1.32
CDH3-208ENST00000569036 Q6ZRP5 223 aa6.83□□□□□ -1.32
CDH3-208ENST00000569036 Q9UF83 564 aa6.83□□□□□ -1.32
CDH3-208ENST00000569036 hADV29S1A0JD25 119 aa6.81□□□□□ -1.32
CDH3-208ENST00000569036 KRTAP26-1Q6PEX3 210 aa6.81□□□□□ -1.32
CDH3-208ENST00000569036 FAM218AQ96MZ4 157 aa6.81□□□□□ -1.32
CDH3-208ENST00000569036 ORMDL1Q9P0S3 153 aa6.81□□□□□ -1.32
CDH3-208ENST00000569036 A0A087WZ39 114 aa6.8□□□□□ -1.32
CDH3-208ENST00000569036 TRAV13-1A0A0B4J241 112 aa6.8□□□□□ -1.32
CDH3-208ENST00000569036 IGKV2-24A0A0C4DH68 120 aa6.8□□□□□ -1.32
CDH3-208ENST00000569036 NDUFC2O95298 119 aa6.8□□□□□ -1.32
CDH3-208ENST00000569036 MIR7-3HGQ8N6C7 128 aa6.8□□□□□ -1.32
CDH3-208ENST00000569036 LINC00337Q8N6G1 96 aa6.8□□□□□ -1.32
CDH3-208ENST00000569036 IGKV2-28A0A075B6P5 120 aa6.79□□□□□ -1.32
CDH3-208ENST00000569036 IGKV2D-28P01615 120 aa6.79□□□□□ -1.32
CDH3-208ENST00000569036 CCKP06307 115 aa6.79□□□□□ -1.32
CDH3-208ENST00000569036 NTM-AS1Q6ZSK4 140 aa6.79□□□□□ -1.32
CDH3-208ENST00000569036 SMIM11BQ8TCY0 68 aa6.79□□□□□ -1.32
CDH3-208ENST00000569036 TMEM256-PLSCR3K7ERE1 68 aa6.78□□□□□ -1.32
CDH3-208ENST00000569036 COX17Q14061 63 aa6.78□□□□□ -1.32
CDH3-208ENST00000569036 KRTAP3-3Q9BYR6 98 aa6.78□□□□□ -1.32
CDH3-208ENST00000569036 KRTAP3-2Q9BYR7 98 aa6.78□□□□□ -1.32
CDH3-208ENST00000569036 IGHV3OR16-9A0A0B4J2B5 98 aa6.77□□□□□ -1.33
CDH3-208ENST00000569036 ANGP03950 147 aaKnown RBP6.77□□□□□ -1.33
CDH3-208ENST00000569036 Q8IZM0 81 aa6.77□□□□□ -1.33
CDH3-208ENST00000569036 GHRHP01286 108 aa6.76□□□□□ -1.33
CDH3-208ENST00000569036 PDE6GP18545 87 aa6.76□□□□□ -1.33
CDH3-208ENST00000569036 LINC00158P58513 81 aa6.76□□□□□ -1.33
CDH3-208ENST00000569036 CLPSL2Q6UWE3 100 aa6.75□□□□□ -1.33
CDH3-208ENST00000569036 LINC00846Q9NV44 126 aa6.75□□□□□ -1.33
CDH3-208ENST00000569036 IGLV1-50A0A075B6I6 118 aa6.74□□□□□ -1.33
CDH3-208ENST00000569036 TRBV6-8A0A0A6YYG3 113 aa6.74□□□□□ -1.33
CDH3-208ENST00000569036 A0A0U1RRA0 63 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms