RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 C2orf66Q6UXQ4 117 aa6.53□□□□□ -1.36
CLK3-222ENST00000568232 TIMM17AQ99595 171 aa6.53□□□□□ -1.36
CLK3-222ENST00000568232 SNHG12Q9BXW3 62 aa6.53□□□□□ -1.36
CLK3-222ENST00000568232 TOMM7Q9P0U1 55 aa6.53□□□□□ -1.36
CLK3-222ENST00000568232 USH2AO75445 5202 aa6.52□□□□□ -1.37
CLK3-222ENST00000568232 A4D1N5 150 aa6.52□□□□□ -1.37
CLK3-222ENST00000568232 F8VRH5 84 aa6.52□□□□□ -1.37
CLK3-222ENST00000568232 SPANXA1Q9NS26 97 aa6.52□□□□□ -1.37
CLK3-222ENST00000568232 M0R2T5 61 aa6.51□□□□□ -1.37
CLK3-222ENST00000568232 CKS1BP61024 79 aa6.51□□□□□ -1.37
CLK3-222ENST00000568232 BOD1L2Q8IYS8 172 aa6.51□□□□□ -1.37
CLK3-222ENST00000568232 DAND5Q8N907 189 aa6.51□□□□□ -1.37
CLK3-222ENST00000568232 PRSS2P07478 247 aa6.5□□□□□ -1.37
CLK3-222ENST00000568232 C6orf226Q5I0X4 101 aa6.5□□□□□ -1.37
CLK3-222ENST00000568232 PLEKHB2Q96CS7 222 aa6.5□□□□□ -1.37
CLK3-222ENST00000568232 IGKV2-28A0A075B6P5 120 aa6.49□□□□□ -1.37
CLK3-222ENST00000568232 IGKV2D-28P01615 120 aa6.49□□□□□ -1.37
CLK3-222ENST00000568232 HERVK_113P61574 105 aa6.49□□□□□ -1.37
CLK3-222ENST00000568232 SEC11AP67812 179 aa6.49□□□□□ -1.37
CLK3-222ENST00000568232 PMVKQ15126 192 aa6.49□□□□□ -1.37
CLK3-222ENST00000568232 HIGD1BQ9P298 99 aa6.49□□□□□ -1.37
CLK3-222ENST00000568232 PYGO1Q9Y3Y4 419 aa6.49□□□□□ -1.37
CLK3-222ENST00000568232 IGIPA6NJ69 53 aa6.48□□□□□ -1.37
CLK3-222ENST00000568232 FAM19A1Q7Z5A9 133 aa6.48□□□□□ -1.37
CLK3-222ENST00000568232 FLGP20930 4061 aaPredicted RBP6.48□□□□□ -1.37
CLK3-222ENST00000568232 A6NDN8 102 aa6.47□□□□□ -1.37
CLK3-222ENST00000568232 HSD52Q0P140 79 aa6.47□□□□□ -1.37
CLK3-222ENST00000568232 ZC2HC1BQ5TFG8 222 aa6.47□□□□□ -1.37
CLK3-222ENST00000568232 Q8NBF4 154 aa6.47□□□□□ -1.37
CLK3-222ENST00000568232 IGLV8-61A0A075B6I0 122 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 IGLV4-3A0A075B6K6 122 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 NMUP48645 174 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 BATFQ16520 125 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 TAL2Q16559 108 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 Q8IZM0 81 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 LINC01561Q8N1V8 128 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 VCX2Q9H322 139 aa6.46□□□□□ -1.38
CLK3-222ENST00000568232 IGLV5-37A0A075B6J1 123 aa6.45□□□□□ -1.38
CLK3-222ENST00000568232 PCOTHQ58A44 107 aa6.45□□□□□ -1.38
CLK3-222ENST00000568232 NKAPP1Q8N9T2 125 aa6.45□□□□□ -1.38
CLK3-222ENST00000568232 CST9LQ9H4G1 147 aa6.45□□□□□ -1.38
CLK3-222ENST00000568232 FCGBPQ9Y6R7 5405 aaPredicted RBP6.45□□□□□ -1.38
CLK3-222ENST00000568232 E9PLD3 99 aa6.44□□□□□ -1.38
CLK3-222ENST00000568232 HINT1P49773 126 aaPredicted RBP6.44□□□□□ -1.38
CLK3-222ENST00000568232 BVES-AS1Q5T3Y7 98 aa6.44□□□□□ -1.38
CLK3-222ENST00000568232 TMEM126AQ9H061 195 aa6.44□□□□□ -1.38
CLK3-222ENST00000568232 C11orf86A6NJI1 115 aa6.43□□□□□ -1.38
CLK3-222ENST00000568232 SPINK1P00995 79 aa6.43□□□□□ -1.38
CLK3-222ENST00000568232 KRTAP5-3Q6L8H2 238 aa6.43□□□□□ -1.38
CLK3-222ENST00000568232 C2orf91Q6ZV80 131 aa6.42□□□□□ -1.38
CLK3-222ENST00000568232 SPRR4Q96PI1 79 aa6.42□□□□□ -1.38
CLK3-222ENST00000568232 HIGD2AQ9BW72 106 aa6.42□□□□□ -1.38
CLK3-222ENST00000568232 NDUFA12Q9UI09 145 aa6.42□□□□□ -1.38
CLK3-222ENST00000568232 MYMXA0A1B0GTQ4 84 aa6.41□□□□□ -1.38
CLK3-222ENST00000568232 M0R378 163 aa6.41□□□□□ -1.38
CLK3-222ENST00000568232 Q8N377 158 aa6.41□□□□□ -1.38
CLK3-222ENST00000568232 SYNE2Q8WXH0 6885 aaKnown RBP6.4□□□□□ -1.38
CLK3-222ENST00000568232 PCP2Q8IVA1 136 aa6.4□□□□□ -1.38
CLK3-222ENST00000568232 AMELXQ99217 191 aa6.4□□□□□ -1.38
CLK3-222ENST00000568232 CDKN2A-AS1Q9UH64 79 aa6.4□□□□□ -1.38
CLK3-222ENST00000568232 H3BRM9 83 aa6.39□□□□□ -1.39
CLK3-222ENST00000568232 TMEM170BQ5T4T1 132 aa6.39□□□□□ -1.39
CLK3-222ENST00000568232 TINCRA0A1B0GVN0 87 aa6.38□□□□□ -1.39
CLK3-222ENST00000568232 KRTAP4-16G5E9R7 235 aaPredicted RBP6.38□□□□□ -1.39
CLK3-222ENST00000568232 SMIM13P0DJ93 91 aa6.38□□□□□ -1.39
CLK3-222ENST00000568232 LEPROTO15243 131 aa6.37□□□□□ -1.39
CLK3-222ENST00000568232 SCGB1A1P11684 91 aa6.37□□□□□ -1.39
CLK3-222ENST00000568232 LGALS3P17931 250 aaKnown RBP6.37□□□□□ -1.39
CLK3-222ENST00000568232 SCGB1D4Q6XE38 83 aa6.37□□□□□ -1.39
CLK3-222ENST00000568232 CEND1Q8N111 149 aa6.37□□□□□ -1.39
CLK3-222ENST00000568232 HIST1H4GQ99525 98 aa6.37□□□□□ -1.39
CLK3-222ENST00000568232 TMEM223A0PJW6 202 aa6.36□□□□□ -1.39
CLK3-222ENST00000568232 ZNF815PA8K554 130 aa6.36□□□□□ -1.39
CLK3-222ENST00000568232 J3QQQ9 107 aa6.36□□□□□ -1.39
CLK3-222ENST00000568232 CXCL5P42830 114 aa6.36□□□□□ -1.39
CLK3-222ENST00000568232 HERVK_113P63121 156 aa6.36□□□□□ -1.39
CLK3-222ENST00000568232 GTF2H5Q6ZYL4 71 aa6.36□□□□□ -1.39
CLK3-222ENST00000568232 GEMIN7Q9H840 131 aaKnown RBP6.36□□□□□ -1.39
CLK3-222ENST00000568232 TAX1BP3O14907 124 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 SLC25A20O43772 301 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 VPREB1P12018 145 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 UBE2V1Q13404 147 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 VAMP3Q15836 100 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 COX6B2Q6YFQ2 88 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 Q6ZVH6 145 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 FAM19A3Q7Z5A8 133 aa6.35□□□□□ -1.39
CLK3-222ENST00000568232 SPANXB1Q9NS25 103 aaPredicted RBP6.35□□□□□ -1.39
CLK3-222ENST00000568232 C9orf118A6NHY6 69 aa6.34□□□□□ -1.39
CLK3-222ENST00000568232 COPS9Q8WXC6 57 aa6.34□□□□□ -1.39
CLK3-222ENST00000568232 MACF1Q9UPN3 7388 aaKnown RBP6.34□□□□□ -1.39
CLK3-222ENST00000568232 IGLV5-45A0A087WSX0 123 aa6.33□□□□□ -1.4
CLK3-222ENST00000568232 SMIM1B2RUZ4 78 aa6.33□□□□□ -1.4
CLK3-222ENST00000568232 ZNF22P17026 224 aaPredicted RBP6.33□□□□□ -1.4
CLK3-222ENST00000568232 RPS29P62273 56 aaKnown RBP6.33□□□□□ -1.4
CLK3-222ENST00000568232 Q8NDZ9 215 aa6.33□□□□□ -1.4
CLK3-222ENST00000568232 COX7B2Q8TF08 81 aa6.33□□□□□ -1.4
CLK3-222ENST00000568232 ZNF706Q9Y5V0 76 aaPredicted RBP6.33□□□□□ -1.4
CLK3-222ENST00000568232 C9orf92A6NGG3 77 aa6.32□□□□□ -1.4
CLK3-222ENST00000568232 FABP2P12104 132 aa6.32□□□□□ -1.4
CLK3-222ENST00000568232 IGLV9-49A0A0B4J1Y8 123 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms