RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 BVES-AS1Q5T3Y7 98 aa12.74□□□□□ -0.37
CLN3-212ENST00000564574 KRTAP4-5Q9BYR2 181 aa12.74□□□□□ -0.37
CLN3-212ENST00000564574 BCE1O60756 84 aa12.72□□□□□ -0.37
CLN3-212ENST00000564574 SPRR1AP35321 89 aa12.72□□□□□ -0.37
CLN3-212ENST00000564574 HINT1P49773 126 aaPredicted RBP12.71□□□□□ -0.37
CLN3-212ENST00000564574 Q5VSD8 79 aa12.71□□□□□ -0.37
CLN3-212ENST00000564574 NHP2Q9NX24 153 aaKnown RBP12.71□□□□□ -0.37
CLN3-212ENST00000564574 A0A1B0GWB2 263 aa12.7□□□□□ -0.38
CLN3-212ENST00000564574 RPL13AP40429 203 aaKnown RBP12.7□□□□□ -0.38
CLN3-212ENST00000564574 ZNF73O43830 326 aaPredicted RBP12.69□□□□□ -0.38
CLN3-212ENST00000564574 PRO1854Q9UHT4 67 aa12.69□□□□□ -0.38
CLN3-212ENST00000564574 IGLV7-43P04211 117 aa12.68□□□□□ -0.38
CLN3-212ENST00000564574 ETDCA0A1B0GVM5 59 aa12.67□□□□□ -0.38
CLN3-212ENST00000564574 KRTAP10-4P60372 401 aaPredicted RBP12.67□□□□□ -0.38
CLN3-212ENST00000564574 DIRC1Q969H9 104 aa12.67□□□□□ -0.38
CLN3-212ENST00000564574 VPS13BQ7Z7G8 4022 aa12.67□□□□□ -0.38
CLN3-212ENST00000564574 KRTAP4-16G5E9R7 235 aaPredicted RBP12.66□□□□□ -0.38
CLN3-212ENST00000564574 FAM19A1Q7Z5A9 133 aa12.66□□□□□ -0.38
CLN3-212ENST00000564574 FAT1Q14517 4588 aa12.66□□□□□ -0.38
CLN3-212ENST00000564574 SMIM11BQ8TCY0 68 aa12.65□□□□□ -0.38
CLN3-212ENST00000564574 H0Y9J4 135 aa12.64□□□□□ -0.39
CLN3-212ENST00000564574 UBE2AP49459 152 aa12.64□□□□□ -0.39
CLN3-212ENST00000564574 TRBV7-6A0A0J9YX20 115 aa12.63□□□□□ -0.39
CLN3-212ENST00000564574 RPL28P46779 137 aaKnown RBP12.63□□□□□ -0.39
CLN3-212ENST00000564574 C6orf99Q4VX62 202 aa12.63□□□□□ -0.39
CLN3-212ENST00000564574 K7ERJ3 54 aa12.62□□□□□ -0.39
CLN3-212ENST00000564574 ZNF861PO60384 105 aa12.62□□□□□ -0.39
CLN3-212ENST00000564574 KRTAP13-1Q8IUC0 172 aa12.62□□□□□ -0.39
CLN3-212ENST00000564574 B5MCH6 92 aa12.61□□□□□ -0.39
CLN3-212ENST00000564574 H7C2G1 150 aa12.61□□□□□ -0.39
CLN3-212ENST00000564574 Q1RN00 199 aa12.61□□□□□ -0.39
CLN3-212ENST00000564574 PRLHP81277 87 aa12.6□□□□□ -0.39
CLN3-212ENST00000564574 Q6ZRX8 168 aa12.6□□□□□ -0.39
CLN3-212ENST00000564574 PCP4L1A6NKN8 68 aa12.59□□□□□ -0.39
CLN3-212ENST00000564574 COX7BP24311 80 aa12.59□□□□□ -0.39
CLN3-212ENST00000564574 VAMP3Q15836 100 aa12.59□□□□□ -0.39
CLN3-212ENST00000564574 BATFQ16520 125 aa12.59□□□□□ -0.39
CLN3-212ENST00000564574 ELOF1P60002 83 aaKnown RBP12.58□□□□□ -0.4
CLN3-212ENST00000564574 SPINK6Q6UWN8 80 aa12.58□□□□□ -0.4
CLN3-212ENST00000564574 TSPAN13O95857 204 aa12.55□□□□□ -0.4
CLN3-212ENST00000564574 PKHD1L1Q86WI1 4243 aa12.53□□□□□ -0.4
CLN3-212ENST00000564574 INAFM2P0DMQ5 153 aa12.53□□□□□ -0.4
CLN3-212ENST00000564574 HIGD2AQ9BW72 106 aa12.53□□□□□ -0.4
CLN3-212ENST00000564574 DHRS4-AS1Q9P1J3 65 aa12.53□□□□□ -0.4
CLN3-212ENST00000564574 SMCR5Q8TEV8 140 aa12.52□□□□□ -0.41
CLN3-212ENST00000564574 SNHG12Q9BXW3 62 aa12.52□□□□□ -0.41
CLN3-212ENST00000564574 H0YGX0 51 aa12.51□□□□□ -0.41
CLN3-212ENST00000564574 Q9BRP9 147 aa12.51□□□□□ -0.41
CLN3-212ENST00000564574 PSMB2P49721 201 aa12.5□□□□□ -0.41
CLN3-212ENST00000564574 TRIAP1O43715 76 aa12.49□□□□□ -0.41
CLN3-212ENST00000564574 COX6CP09669 75 aa12.49□□□□□ -0.41
CLN3-212ENST00000564574 SLC25A20O43772 301 aa12.47□□□□□ -0.41
CLN3-212ENST00000564574 LINC00575Q6W349 94 aa12.47□□□□□ -0.41
CLN3-212ENST00000564574 ZNF706Q9Y5V0 76 aaPredicted RBP12.45□□□□□ -0.42
CLN3-212ENST00000564574 ERC2-IT1O76042 136 aa12.44□□□□□ -0.42
CLN3-212ENST00000564574 SNCGO76070 127 aa12.43□□□□□ -0.42
CLN3-212ENST00000564574 COL5A1-AS1Q5SY13 56 aa12.43□□□□□ -0.42
CLN3-212ENST00000564574 A0A1B0GX51 115 aa12.42□□□□□ -0.42
CLN3-212ENST00000564574 hADV29S1A0JD25 119 aa12.42□□□□□ -0.42
CLN3-212ENST00000564574 TAX1BP3O14907 124 aa12.42□□□□□ -0.42
CLN3-212ENST00000564574 SCGB1C2P0DMR2 95 aa12.41□□□□□ -0.42
CLN3-212ENST00000564574 SRRM2Q9UQ35 2752 aaKnown RBP12.41□□□□□ -0.42
CLN3-212ENST00000564574 C9orf118A6NHY6 69 aa12.4□□□□□ -0.42
CLN3-212ENST00000564574 SPRR4Q96PI1 79 aa12.4□□□□□ -0.42
CLN3-212ENST00000564574 LYRM7Q5U5X0 104 aa12.39□□□□□ -0.43
CLN3-212ENST00000564574 FAM218AQ96MZ4 157 aa12.38□□□□□ -0.43
CLN3-212ENST00000564574 NAA38Q9BRA0 125 aaKnown RBP12.38□□□□□ -0.43
CLN3-212ENST00000564574 H3BUT2 72 aa12.37□□□□□ -0.43
CLN3-212ENST00000564574 CLEC2BQ92478 149 aa12.37□□□□□ -0.43
CLN3-212ENST00000564574 KRTAP1-4P0C5Y4 121 aa12.36□□□□□ -0.43
CLN3-212ENST00000564574 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.36□□□□□ -0.43
CLN3-212ENST00000564574 ST20-AS1Q8NBB2 130 aa12.35□□□□□ -0.43
CLN3-212ENST00000564574 FAM229BQ4G0N7 80 aa12.34□□□□□ -0.43
CLN3-212ENST00000564574 LINC00483Q53H64 154 aa12.34□□□□□ -0.43
CLN3-212ENST00000564574 LST1O00453 97 aa12.33□□□□□ -0.44
CLN3-212ENST00000564574 SPRR1BP22528 89 aa12.33□□□□□ -0.44
CLN3-212ENST00000564574 GAGE2AQ6NT46 116 aa12.33□□□□□ -0.44
CLN3-212ENST00000564574 Q6ZQY7 126 aa12.33□□□□□ -0.44
CLN3-212ENST00000564574 IGLV5-48A0A075B6I7 105 aa12.32□□□□□ -0.44
CLN3-212ENST00000564574 OCIAD2Q56VL3 154 aa12.32□□□□□ -0.44
CLN3-212ENST00000564574 A0A1W2PPM0 123 aa12.31□□□□□ -0.44
CLN3-212ENST00000564574 TRACP01848 142 aa12.31□□□□□ -0.44
CLN3-212ENST00000564574 TEX49A0A1B0GTD5 131 aa12.3□□□□□ -0.44
CLN3-212ENST00000564574 DNAL4O96015 105 aa12.3□□□□□ -0.44
CLN3-212ENST00000564574 GHRHP01286 108 aa12.3□□□□□ -0.44
CLN3-212ENST00000564574 TRBV20-1A0A075B6N2 111 aa12.29□□□□□ -0.44
CLN3-212ENST00000564574 OXTP01178 125 aa12.29□□□□□ -0.44
CLN3-212ENST00000564574 FABP2P12104 132 aa12.29□□□□□ -0.44
CLN3-212ENST00000564574 LINC01547P58512 204 aaPredicted RBP12.29□□□□□ -0.44
CLN3-212ENST00000564574 ATXN8Q156A1 80 aa12.29□□□□□ -0.44
CLN3-212ENST00000564574 PPDPFLQ8WWR9 84 aa12.29□□□□□ -0.44
CLN3-212ENST00000564574 LINC01600Q96MT4 127 aa12.29□□□□□ -0.44
CLN3-212ENST00000564574 TCL1BO95988 128 aa12.28□□□□□ -0.44
CLN3-212ENST00000564574 CRYGAP11844 174 aa12.28□□□□□ -0.44
CLN3-212ENST00000564574 DEFB105AQ8NG35 78 aa12.28□□□□□ -0.44
CLN3-212ENST00000564574 HERC1Q15751 4861 aa12.28□□□□□ -0.44
CLN3-212ENST00000564574 ANAPC11Q9NYG5 84 aa12.27□□□□□ -0.45
CLN3-212ENST00000564574 FLG2Q5D862 2391 aaPredicted RBP12.26□□□□□ -0.45
CLN3-212ENST00000564574 H3BQ85 93 aa12.25□□□□□ -0.45
CLN3-212ENST00000564574 Q8N377 158 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms