RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RPL37AP61513 92 aaKnown RBP10.21□□□□□ -0.77
VPS4A-202ENST00000562754 C1orf137Q5JT78 98 aa10.2□□□□□ -0.78
VPS4A-202ENST00000562754 SMIM11BQ8TCY0 68 aa10.2□□□□□ -0.78
VPS4A-202ENST00000562754 PRO1854Q9UHT4 67 aa10.2□□□□□ -0.78
VPS4A-202ENST00000562754 KRTAP4-16G5E9R7 235 aaPredicted RBP10.19□□□□□ -0.78
VPS4A-202ENST00000562754 H7C2G1 150 aa10.19□□□□□ -0.78
VPS4A-202ENST00000562754 ZNF73O43830 326 aaPredicted RBP10.19□□□□□ -0.78
VPS4A-202ENST00000562754 BCE1O60756 84 aa10.19□□□□□ -0.78
VPS4A-202ENST00000562754 BATFQ16520 125 aa10.19□□□□□ -0.78
VPS4A-202ENST00000562754 FAT1Q14517 4588 aa10.19□□□□□ -0.78
VPS4A-202ENST00000562754 Q5VSD8 79 aa10.17□□□□□ -0.78
VPS4A-202ENST00000562754 Q8N1X5 172 aa10.17□□□□□ -0.78
VPS4A-202ENST00000562754 CBY1Q9Y3M2 126 aa10.17□□□□□ -0.78
VPS4A-202ENST00000562754 VPS13BQ7Z7G8 4022 aa10.16□□□□□ -0.78
VPS4A-202ENST00000562754 C6orf99Q4VX62 202 aa10.16□□□□□ -0.78
VPS4A-202ENST00000562754 DIRC1Q969H9 104 aa10.16□□□□□ -0.78
VPS4A-202ENST00000562754 SNHG12Q9BXW3 62 aa10.16□□□□□ -0.78
VPS4A-202ENST00000562754 FAM229AH3BQW9 127 aa10.15□□□□□ -0.78
VPS4A-202ENST00000562754 IGLV7-43P04211 117 aa10.15□□□□□ -0.78
VPS4A-202ENST00000562754 PRLHP81277 87 aa10.15□□□□□ -0.78
VPS4A-202ENST00000562754 FAM19A1Q7Z5A9 133 aa10.15□□□□□ -0.78
VPS4A-202ENST00000562754 KRTAP13-1Q8IUC0 172 aa10.15□□□□□ -0.78
VPS4A-202ENST00000562754 ETDCA0A1B0GVM5 59 aa10.14□□□□□ -0.79
VPS4A-202ENST00000562754 TSPAN13O95857 204 aa10.14□□□□□ -0.79
VPS4A-202ENST00000562754 RPL28P46779 137 aaKnown RBP10.14□□□□□ -0.79
VPS4A-202ENST00000562754 B5MCH6 92 aa10.13□□□□□ -0.79
VPS4A-202ENST00000562754 PLA2G1BP04054 148 aaKnown RBP10.13□□□□□ -0.79
VPS4A-202ENST00000562754 Q1RN00 199 aa10.13□□□□□ -0.79
VPS4A-202ENST00000562754 UBE2AP49459 152 aa10.12□□□□□ -0.79
VPS4A-202ENST00000562754 ELOF1P60002 83 aaKnown RBP10.11□□□□□ -0.79
VPS4A-202ENST00000562754 Q6ZRX8 168 aa10.11□□□□□ -0.79
VPS4A-202ENST00000562754 TRBV7-6A0A0J9YX20 115 aa10.1□□□□□ -0.79
VPS4A-202ENST00000562754 COX7BP24311 80 aa10.1□□□□□ -0.79
VPS4A-202ENST00000562754 H0Y9J4 135 aa10.09□□□□□ -0.79
VPS4A-202ENST00000562754 TRIAP1O43715 76 aa10.09□□□□□ -0.79
VPS4A-202ENST00000562754 ZNF861PO60384 105 aa10.09□□□□□ -0.79
VPS4A-202ENST00000562754 Q9BRP9 147 aa10.09□□□□□ -0.79
VPS4A-202ENST00000562754 SMCR5Q8TEV8 140 aa10.08□□□□□ -0.8
VPS4A-202ENST00000562754 HERC2O95714 4834 aa10.07□□□□□ -0.8
VPS4A-202ENST00000562754 NAA38Q9BRA0 125 aaKnown RBP10.07□□□□□ -0.8
VPS4A-202ENST00000562754 KRTAP4-5Q9BYR2 181 aa10.07□□□□□ -0.8
VPS4A-202ENST00000562754 PKHD1L1Q86WI1 4243 aa10.07□□□□□ -0.8
VPS4A-202ENST00000562754 TAX1BP3O14907 124 aa10.06□□□□□ -0.8
VPS4A-202ENST00000562754 HIGD2AQ9BW72 106 aa10.06□□□□□ -0.8
VPS4A-202ENST00000562754 PSMB2P49721 201 aa10.05□□□□□ -0.8
VPS4A-202ENST00000562754 SRRM2Q9UQ35 2752 aaKnown RBP10.04□□□□□ -0.8
VPS4A-202ENST00000562754 ERC2-IT1O76042 136 aa10.04□□□□□ -0.8
VPS4A-202ENST00000562754 VAMP3Q15836 100 aa10.04□□□□□ -0.8
VPS4A-202ENST00000562754 COL5A1-AS1Q5SY13 56 aa10.02□□□□□ -0.81
VPS4A-202ENST00000562754 SPINK6Q6UWN8 80 aa10.02□□□□□ -0.81
VPS4A-202ENST00000562754 LINC00575Q6W349 94 aa10.02□□□□□ -0.81
VPS4A-202ENST00000562754 FAM218AQ96MZ4 157 aa10.02□□□□□ -0.81
VPS4A-202ENST00000562754 CLEC2BQ92478 149 aa10.01□□□□□ -0.81
VPS4A-202ENST00000562754 DHRS4-AS1Q9P1J3 65 aa10.01□□□□□ -0.81
VPS4A-202ENST00000562754 C9orf118A6NHY6 69 aa10□□□□□ -0.81
VPS4A-202ENST00000562754 H0YGX0 51 aa10□□□□□ -0.81
VPS4A-202ENST00000562754 INAFM2P0DMQ5 153 aa10□□□□□ -0.81
VPS4A-202ENST00000562754 H3BUT2 72 aa9.99□□□□□ -0.81
VPS4A-202ENST00000562754 COX6CP09669 75 aa9.98□□□□□ -0.81
VPS4A-202ENST00000562754 ST20-AS1Q8NBB2 130 aa9.97□□□□□ -0.81
VPS4A-202ENST00000562754 hADV29S1A0JD25 119 aa9.96□□□□□ -0.82
VPS4A-202ENST00000562754 SLC25A20O43772 301 aa9.96□□□□□ -0.82
VPS4A-202ENST00000562754 SCGB1C2P0DMR2 95 aa9.96□□□□□ -0.82
VPS4A-202ENST00000562754 SPRR4Q96PI1 79 aa9.95□□□□□ -0.82
VPS4A-202ENST00000562754 FLG2Q5D862 2391 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-202ENST00000562754 KRTAP1-4P0C5Y4 121 aa9.94□□□□□ -0.82
VPS4A-202ENST00000562754 A0A1W2PPM0 123 aa9.93□□□□□ -0.82
VPS4A-202ENST00000562754 A0A1B0GX51 115 aa9.92□□□□□ -0.82
VPS4A-202ENST00000562754 LST1O00453 97 aa9.92□□□□□ -0.82
VPS4A-202ENST00000562754 TCL1BO95988 128 aa9.92□□□□□ -0.82
VPS4A-202ENST00000562754 Q6ZQY7 126 aa9.92□□□□□ -0.82
VPS4A-202ENST00000562754 ZNF706Q9Y5V0 76 aaPredicted RBP9.92□□□□□ -0.82
VPS4A-202ENST00000562754 LINC01547P58512 204 aaPredicted RBP9.91□□□□□ -0.82
VPS4A-202ENST00000562754 LYRM7Q5U5X0 104 aa9.91□□□□□ -0.82
VPS4A-202ENST00000562754 ANAPC11Q9NYG5 84 aa9.91□□□□□ -0.82
VPS4A-202ENST00000562754 GAGE2AQ6NT46 116 aa9.9□□□□□ -0.82
VPS4A-202ENST00000562754 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.9□□□□□ -0.82
VPS4A-202ENST00000562754 IGLV5-48A0A075B6I7 105 aa9.89□□□□□ -0.83
VPS4A-202ENST00000562754 FABP2P12104 132 aa9.89□□□□□ -0.83
VPS4A-202ENST00000562754 LINC00483Q53H64 154 aa9.89□□□□□ -0.83
VPS4A-202ENST00000562754 TRACP01848 142 aa9.88□□□□□ -0.83
VPS4A-202ENST00000562754 SPRR1BP22528 89 aa9.88□□□□□ -0.83
VPS4A-202ENST00000562754 DEFB105AQ8NG35 78 aa9.88□□□□□ -0.83
VPS4A-202ENST00000562754 ATXN8Q156A1 80 aa9.87□□□□□ -0.83
VPS4A-202ENST00000562754 SNCGO76070 127 aa9.86□□□□□ -0.83
VPS4A-202ENST00000562754 Q8N377 158 aa9.86□□□□□ -0.83
VPS4A-202ENST00000562754 TRBV20-1A0A075B6N2 111 aa9.85□□□□□ -0.83
VPS4A-202ENST00000562754 A0A087X002 238 aa9.85□□□□□ -0.83
VPS4A-202ENST00000562754 DNAL4O96015 105 aa9.85□□□□□ -0.83
VPS4A-202ENST00000562754 FAM229BQ4G0N7 80 aa9.85□□□□□ -0.83
VPS4A-202ENST00000562754 ABCA13Q86UQ4 5058 aa9.85□□□□□ -0.83
VPS4A-202ENST00000562754 TEX49A0A1B0GTD5 131 aa9.84□□□□□ -0.83
VPS4A-202ENST00000562754 SPCS1Q9Y6A9 102 aa9.84□□□□□ -0.83
VPS4A-202ENST00000562754 SMIM29Q86T20 159 aa9.83□□□□□ -0.84
VPS4A-202ENST00000562754 KRTAP13-2Q52LG2 175 aa9.82□□□□□ -0.84
VPS4A-202ENST00000562754 OCIAD2Q56VL3 154 aa9.82□□□□□ -0.84
VPS4A-202ENST00000562754 C3orf22Q8N5N4 141 aa9.82□□□□□ -0.84
VPS4A-202ENST00000562754 PRR26Q8N8Z3 221 aa9.82□□□□□ -0.84
VPS4A-202ENST00000562754 LINC01600Q96MT4 127 aa9.81□□□□□ -0.84
VPS4A-202ENST00000562754 ORMDL1Q9P0S3 153 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms