RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 Q8NDZ9 215 aa7.31□□□□□ -1.24
USP3-206ENST00000558157 PRB2P02812 416 aaPredicted RBP7.3□□□□□ -1.24
USP3-206ENST00000558157 Q6ZRP5 223 aa7.3□□□□□ -1.24
USP3-206ENST00000558157 HIGD2AQ9BW72 106 aa7.3□□□□□ -1.24
USP3-206ENST00000558157 A0A1B0GW54 56 aa7.29□□□□□ -1.24
USP3-206ENST00000558157 DAD1P61803 113 aa7.29□□□□□ -1.24
USP3-206ENST00000558157 CELA1Q9UNI1 258 aa7.29□□□□□ -1.24
USP3-206ENST00000558157 X6R8D5 127 aa7.29□□□□□ -1.24
USP3-206ENST00000558157 NOTCH1P46531 2555 aa7.29□□□□□ -1.24
USP3-206ENST00000558157 A0A0J9YWU9 116 aa7.29□□□□□ -1.24
USP3-206ENST00000558157 ELOF1P60002 83 aaKnown RBP7.28□□□□□ -1.24
USP3-206ENST00000558157 LYRM9A8MSI8 78 aa7.28□□□□□ -1.24
USP3-206ENST00000558157 NBEAL1Q6ZS30 2694 aa7.27□□□□□ -1.24
USP3-206ENST00000558157 DNHD1Q96M86 4753 aa7.27□□□□□ -1.25
USP3-206ENST00000558157 MGAM2Q2M2H8 2515 aa7.27□□□□□ -1.25
USP3-206ENST00000558157 KPRPQ5T749 579 aaPredicted RBP7.27□□□□□ -1.25
USP3-206ENST00000558157 LINC00269Q8N2A0 174 aa7.27□□□□□ -1.25
USP3-206ENST00000558157 C1orf64Q8NEQ6 169 aa7.27□□□□□ -1.25
USP3-206ENST00000558157 CYP4F30PQ9H0H9 118 aa7.27□□□□□ -1.25
USP3-206ENST00000558157 C9orf116Q5BN46 136 aaPredicted RBP7.27□□□□□ -1.25
USP3-206ENST00000558157 NBEAL2Q6ZNJ1 2754 aa7.26□□□□□ -1.25
USP3-206ENST00000558157 ZNF73O43830 326 aaPredicted RBP7.26□□□□□ -1.25
USP3-206ENST00000558157 HIGD2BQ4VC39 106 aa7.26□□□□□ -1.25
USP3-206ENST00000558157 K7EIL1 84 aa7.26□□□□□ -1.25
USP3-206ENST00000558157 CHCHD10Q8WYQ3 142 aaPredicted RBP7.26□□□□□ -1.25
USP3-206ENST00000558157 RETNQ9HD89 108 aa7.26□□□□□ -1.25
USP3-206ENST00000558157 GVQW2A0A096LPI5 108 aaPredicted RBP7.25□□□□□ -1.25
USP3-206ENST00000558157 ZCCHC13Q8WW36 166 aaKnown RBP7.25□□□□□ -1.25
USP3-206ENST00000558157 Q8N9L7 120 aa7.25□□□□□ -1.25
USP3-206ENST00000558157 TRAV22A0A0B4J277 110 aa7.24□□□□□ -1.25
USP3-206ENST00000558157 DEFB4AO15263 64 aa7.24□□□□□ -1.25
USP3-206ENST00000558157 KRTAP21-3Q3LHN1 58 aa7.24□□□□□ -1.25
USP3-206ENST00000558157 Q8NAQ8 132 aa7.23□□□□□ -1.25
USP3-206ENST00000558157 GYPEP15421 78 aa7.22□□□□□ -1.25
USP3-206ENST00000558157 CLPSL2Q6UWE3 100 aa7.22□□□□□ -1.25
USP3-206ENST00000558157 NDUFB1O75438 58 aa7.22□□□□□ -1.25
USP3-206ENST00000558157 SPAG11BQ08648 103 aa7.22□□□□□ -1.25
USP3-206ENST00000558157 LINC00612Q8N6U2 182 aa7.21□□□□□ -1.25
USP3-206ENST00000558157 DEFB130BP0DP73 79 aa7.21□□□□□ -1.26
USP3-206ENST00000558157 DEFB130AP0DP74 79 aa7.21□□□□□ -1.26
USP3-206ENST00000558157 UBE2BP63146 152 aa7.21□□□□□ -1.26
USP3-206ENST00000558157 REG3AQ06141 175 aa7.21□□□□□ -1.26
USP3-206ENST00000558157 UNQ6190/PRO20217Q6UXQ8 127 aa7.21□□□□□ -1.26
USP3-206ENST00000558157 SMIM29Q86T20 159 aa7.2□□□□□ -1.26
USP3-206ENST00000558157 ETDCA0A1B0GVM5 59 aa7.2□□□□□ -1.26
USP3-206ENST00000558157 PSCAO43653 123 aa7.19□□□□□ -1.26
USP3-206ENST00000558157 C10orf25Q5T742 122 aa7.19□□□□□ -1.26
USP3-206ENST00000558157 LINC00528Q8N1L1 170 aa7.19□□□□□ -1.26
USP3-206ENST00000558157 FAM30AQ9NZY2 134 aa7.19□□□□□ -1.26
USP3-206ENST00000558157 PRO0255Q9UI72 69 aa7.19□□□□□ -1.26
USP3-206ENST00000558157 HUWE1Q7Z6Z7 4374 aaKnown RBP7.19□□□□□ -1.26
USP3-206ENST00000558157 PSPHP1O15172 72 aa7.19□□□□□ -1.26
USP3-206ENST00000558157 MRPL55Q7Z7F7 128 aaKnown RBP7.18□□□□□ -1.26
USP3-206ENST00000558157 ANGP03950 147 aaKnown RBP7.18□□□□□ -1.26
USP3-206ENST00000558157 TENM3Q9P273 2699 aa7.17□□□□□ -1.26
USP3-206ENST00000558157 IGLV5-48A0A075B6I7 105 aa7.17□□□□□ -1.26
USP3-206ENST00000558157 SYCNQ0VAF6 134 aa7.17□□□□□ -1.26
USP3-206ENST00000558157 KTN1-AS1Q86SY8 53 aa7.17□□□□□ -1.26
USP3-206ENST00000558157 LRCOL1A6NCL2 159 aa7.17□□□□□ -1.26
USP3-206ENST00000558157 M0R378 163 aa7.17□□□□□ -1.26
USP3-206ENST00000558157 DNAH9Q9NYC9 4486 aa7.16□□□□□ -1.26
USP3-206ENST00000558157 IGLV10-54A0A075B6I4 117 aa7.16□□□□□ -1.26
USP3-206ENST00000558157 SPART-AS1P0CW21 52 aa7.16□□□□□ -1.26
USP3-206ENST00000558157 UBE2AP49459 152 aa7.16□□□□□ -1.26
USP3-206ENST00000558157 KLK12Q9UKR0 248 aa7.16□□□□□ -1.26
USP3-206ENST00000558157 C3orf84H3BNL1 204 aa7.15□□□□□ -1.26
USP3-206ENST00000558157 LIMD2Q9BT23 127 aa7.15□□□□□ -1.26
USP3-206ENST00000558157 VPREB1P12018 145 aa7.15□□□□□ -1.27
USP3-206ENST00000558157 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.14□□□□□ -1.27
USP3-206ENST00000558157 A8MUN3 132 aa7.13□□□□□ -1.27
USP3-206ENST00000558157 Q5VV11 94 aa7.13□□□□□ -1.27
USP3-206ENST00000558157 LINC00588Q9Y4M8 146 aa7.13□□□□□ -1.27
USP3-206ENST00000558157 C6orf48Q9UBA6 75 aa7.13□□□□□ -1.27
USP3-206ENST00000558157 NDUFS5O43920 106 aa7.12□□□□□ -1.27
USP3-206ENST00000558157 HTN3P15516 51 aa7.12□□□□□ -1.27
USP3-206ENST00000558157 SPANXA2-OT1Q8N9U9 137 aa7.11□□□□□ -1.27
USP3-206ENST00000558157 XAGE1AQ9HD64 81 aa7.11□□□□□ -1.27
USP3-206ENST00000558157 ATP11AUNQ6ZP68 121 aa7.11□□□□□ -1.27
USP3-206ENST00000558157 B9D2Q9BPU9 175 aa7.11□□□□□ -1.27
USP3-206ENST00000558157 PRR34Q9NV39 138 aa7.11□□□□□ -1.27
USP3-206ENST00000558157 PRKDCP78527 4128 aaKnown RBP7.1□□□□□ -1.27
USP3-206ENST00000558157 MEGF8Q7Z7M0 2845 aa7.1□□□□□ -1.27
USP3-206ENST00000558157 SPRR4Q96PI1 79 aa7.09□□□□□ -1.27
USP3-206ENST00000558157 Q9BRP9 147 aa7.09□□□□□ -1.27
USP3-206ENST00000558157 A0A096LPF7 62 aa7.09□□□□□ -1.27
USP3-206ENST00000558157 Q8N377 158 aa7.09□□□□□ -1.27
USP3-206ENST00000558157 Q8NBF4 154 aa7.09□□□□□ -1.27
USP3-206ENST00000558157 C11orf45Q8TAV5 145 aa7.09□□□□□ -1.27
USP3-206ENST00000558157 KCNQ1DNQ9H478 68 aa7.09□□□□□ -1.27
USP3-206ENST00000558157 H3BPC8 53 aa7.08□□□□□ -1.28
USP3-206ENST00000558157 MP68P56378 58 aa7.08□□□□□ -1.28
USP3-206ENST00000558157 HCG22E2RYF7 251 aa7.08□□□□□ -1.28
USP3-206ENST00000558157 DSCR10P59022 87 aa7.08□□□□□ -1.28
USP3-206ENST00000558157 PHF5AQ7RTV0 110 aaKnown RBP7.08□□□□□ -1.28
USP3-206ENST00000558157 RBM12B-AS1Q9P1G2 102 aa7.08□□□□□ -1.28
USP3-206ENST00000558157 COL7A1Q02388 2944 aa7.07□□□□□ -1.28
USP3-206ENST00000558157 A0A1W2PNM2 257 aa7.07□□□□□ -1.28
USP3-206ENST00000558157 CHKB-CPT1BH3BT56 60 aa7.07□□□□□ -1.28
USP3-206ENST00000558157 Q8N9P0 234 aaPredicted RBP7.07□□□□□ -1.28
USP3-206ENST00000558157 C16orf90A8MZG2 172 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms