RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 NHP2Q9NX24 153 aaKnown RBP4.02□□□□□ -1.77
LINC00643-203ENST00000555518 PKD1P98161 4303 aa4.01□□□□□ -1.77
LINC00643-203ENST00000555518 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.01□□□□□ -1.77
LINC00643-203ENST00000555518 A0A0B4J2C4 111 aa4.01□□□□□ -1.77
LINC00643-203ENST00000555518 A6NDN8 102 aa4.01□□□□□ -1.77
LINC00643-203ENST00000555518 COL5A1-AS1Q5SY13 56 aa4.01□□□□□ -1.77
LINC00643-203ENST00000555518 LCE1FQ5T754 118 aa4.01□□□□□ -1.77
LINC00643-203ENST00000555518 KRTAP7-1Q8IUC3 87 aa4.01□□□□□ -1.77
LINC00643-203ENST00000555518 LINC00337Q8N6G1 96 aa4.01□□□□□ -1.77
LINC00643-203ENST00000555518 NDUFC2O95298 119 aa4□□□□□ -1.77
LINC00643-203ENST00000555518 LBHQ53QV2 105 aaPredicted RBP4□□□□□ -1.77
LINC00643-203ENST00000555518 C9orf163Q8N9P6 203 aa4□□□□□ -1.77
LINC00643-203ENST00000555518 XAGE1AQ9HD64 81 aa4□□□□□ -1.77
LINC00643-203ENST00000555518 DYNC1H1Q14204 4646 aaKnown RBP3.99□□□□□ -1.77
LINC00643-203ENST00000555518 A0A096LNI7 61 aa3.99□□□□□ -1.77
LINC00643-203ENST00000555518 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.99□□□□□ -1.77
LINC00643-203ENST00000555518 LOC107984640A0A0U1RRK4 108 aa3.99□□□□□ -1.77
LINC00643-203ENST00000555518 TSPAN13O95857 204 aa3.99□□□□□ -1.77
LINC00643-203ENST00000555518 FUSP35637 526 aaKnown RBP eCLIP3.99□□□□□ -1.77
LINC00643-203ENST00000555518 PRR3P79522 188 aaKnown RBP3.99□□□□□ -1.77
LINC00643-203ENST00000555518 RPL18AQ02543 176 aaKnown RBP3.99□□□□□ -1.77
LINC00643-203ENST00000555518 SDIM1Q6ZPB5 146 aa3.99□□□□□ -1.77
LINC00643-203ENST00000555518 COPS9Q8WXC6 57 aa3.99□□□□□ -1.77
LINC00643-203ENST00000555518 FAM168BA1KXE4 195 aa3.98□□□□□ -1.77
LINC00643-203ENST00000555518 C16orf90A8MZG2 172 aa3.98□□□□□ -1.77
LINC00643-203ENST00000555518 PANO1I0J062 215 aa3.98□□□□□ -1.77
LINC00643-203ENST00000555518 LINC01620Q4KN68 170 aa3.98□□□□□ -1.77
LINC00643-203ENST00000555518 RAB37Q96AX2 223 aa3.98□□□□□ -1.77
LINC00643-203ENST00000555518 NAA38Q9BRA0 125 aaKnown RBP3.98□□□□□ -1.77
LINC00643-203ENST00000555518 TRBV10-2A0A0K0K1G8 114 aa3.97□□□□□ -1.77
LINC00643-203ENST00000555518 EPM2AB3EWF7 344 aa3.97□□□□□ -1.77
LINC00643-203ENST00000555518 NCR3O14931 201 aa3.97□□□□□ -1.77
LINC00643-203ENST00000555518 CHTF8P0CG12 524 aa3.97□□□□□ -1.77
LINC00643-203ENST00000555518 RPL13AP40429 203 aaKnown RBP3.97□□□□□ -1.77
LINC00643-203ENST00000555518 PRO1854Q9UHT4 67 aa3.97□□□□□ -1.77
LINC00643-203ENST00000555518 LRP1BQ9NZR2 4599 aa3.97□□□□□ -1.77
LINC00643-203ENST00000555518 TRAV13-2A0A0B4J235 113 aa3.96□□□□□ -1.78
LINC00643-203ENST00000555518 A0A1B0GV90 55 aa3.96□□□□□ -1.78
LINC00643-203ENST00000555518 A0A1B0GVY2 172 aa3.96□□□□□ -1.78
LINC00643-203ENST00000555518 A0A1W2PNN7 141 aa3.96□□□□□ -1.78
LINC00643-203ENST00000555518 IGLV6-57P01721 117 aa3.96□□□□□ -1.78
LINC00643-203ENST00000555518 PKHD1P08F94 4074 aa3.96□□□□□ -1.78
LINC00643-203ENST00000555518 A0A1W2PPM0 123 aa3.95□□□□□ -1.78
LINC00643-203ENST00000555518 H3BUT2 72 aa3.95□□□□□ -1.78
LINC00643-203ENST00000555518 SPACA4Q8TDM5 124 aa3.95□□□□□ -1.78
LINC00643-203ENST00000555518 C7orf33Q8WU49 177 aa3.95□□□□□ -1.78
LINC00643-203ENST00000555518 IGKV2-24A0A0C4DH68 120 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 TRBV10-3A0A0K0K1G6 114 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 H7C2G1 150 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 M0R378 163 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 RPL28P46779 137 aaKnown RBP3.94□□□□□ -1.78
LINC00643-203ENST00000555518 LINC00336Q6ZUF6 198 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 FAM19A5Q7Z5A7 132 aaPredicted RBP3.94□□□□□ -1.78
LINC00643-203ENST00000555518 SMIM29Q86T20 159 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 SMIM11BQ8TCY0 68 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 C22orf24Q9Y442 160 aa3.94□□□□□ -1.78
LINC00643-203ENST00000555518 KRTAP10-1P60331 282 aa3.93□□□□□ -1.78
LINC00643-203ENST00000555518 KRTAP11-1Q8IUC1 163 aa3.93□□□□□ -1.78
LINC00643-203ENST00000555518 TMEM126AQ9H061 195 aa3.93□□□□□ -1.78
LINC00643-203ENST00000555518 PKIGQ9Y2B9 76 aa3.93□□□□□ -1.78
LINC00643-203ENST00000555518 IGLV1-50A0A075B6I6 118 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 K7EP34 96 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 Q1RN00 199 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 Q6ZSA8 131 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 OR13C6PQ8NH95 151 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 FAM218AQ96MZ4 157 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 LINC00167Q96N53 147 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 KCNQ1DNQ9H478 68 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 RYR1P21817 5038 aa3.92□□□□□ -1.78
LINC00643-203ENST00000555518 TRAV23DV6A0A075B6W5 121 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 KRTAP4-16G5E9R7 235 aaPredicted RBP3.91□□□□□ -1.78
LINC00643-203ENST00000555518 M0QXV9 152 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 TCL1BO95988 128 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 FABP2P12104 132 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 SPRR1AP35321 89 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 S100A7L2Q5SY68 101 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 PHF5AQ7RTV0 110 aaKnown RBP3.91□□□□□ -1.78
LINC00643-203ENST00000555518 MRPL55Q7Z7F7 128 aaKnown RBP3.91□□□□□ -1.78
LINC00643-203ENST00000555518 NKAPP1Q8N9T2 125 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 PLAC8Q9NZF1 115 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 LINC00474Q9P2X8 69 aa3.91□□□□□ -1.78
LINC00643-203ENST00000555518 APOBP04114 4563 aaKnown RBP3.91□□□□□ -1.78
LINC00643-203ENST00000555518 LST1O00453 97 aa3.9□□□□□ -1.79
LINC00643-203ENST00000555518 ZNF73O43830 326 aaPredicted RBP3.9□□□□□ -1.79
LINC00643-203ENST00000555518 CLEC2BQ92478 149 aa3.9□□□□□ -1.79
LINC00643-203ENST00000555518 PRO0461Q9UI25 63 aa3.9□□□□□ -1.79
LINC00643-203ENST00000555518 SPCS1Q9Y6A9 102 aa3.9□□□□□ -1.79
LINC00643-203ENST00000555518 EPPK1P58107 5090 aaKnown RBP3.9□□□□□ -1.79
LINC00643-203ENST00000555518 RPL37AP8A6NKH3 93 aa3.89□□□□□ -1.79
LINC00643-203ENST00000555518 PSMB2P49721 201 aa3.89□□□□□ -1.79
LINC00643-203ENST00000555518 VAMP3Q15836 100 aa3.89□□□□□ -1.79
LINC00643-203ENST00000555518 C6orf99Q4VX62 202 aa3.89□□□□□ -1.79
LINC00643-203ENST00000555518 TRBV20-1A0A075B6N2 111 aa3.88□□□□□ -1.79
LINC00643-203ENST00000555518 IGLV9-49A0A0B4J1Y8 123 aa3.88□□□□□ -1.79
LINC00643-203ENST00000555518 TRBV7-6A0A0J9YX20 115 aa3.88□□□□□ -1.79
LINC00643-203ENST00000555518 ELOF1P60002 83 aaKnown RBP3.88□□□□□ -1.79
LINC00643-203ENST00000555518 DIRC1Q969H9 104 aa3.88□□□□□ -1.79
LINC00643-203ENST00000555518 VPS13BQ7Z7G8 4022 aa3.87□□□□□ -1.79
LINC00643-203ENST00000555518 H0YGX0 51 aa3.87□□□□□ -1.79
LINC00643-203ENST00000555518 H3BMG7 143 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms