RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 U3KQA8 63 aa0.47□□□□□ -2.33
SRP54-204ENST00000553923 BCORQ6W2J9 1755 aa0.47□□□□□ -2.33
SRP54-204ENST00000553923 PLCH1Q4KWH8 1693 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 FAM208BQ5VWN6 2430 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 K7EMI3 77 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 M0R1W7 72 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 NMES1Q9C002 83 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 ZNF462Q96JM2 2506 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 CACNA1CQ13936 2221 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 TNRC6CQ9HCJ0 1690 aaKnown RBP0.46□□□□□ -2.34
SRP54-204ENST00000553923 CCDC180Q9P1Z9 1646 aa0.46□□□□□ -2.34
SRP54-204ENST00000553923 EIF2AK4Q9P2K8 1649 aaKnown RBP0.46□□□□□ -2.34
SRP54-204ENST00000553923 TSC2P49815 1807 aa0.45□□□□□ -2.34
SRP54-204ENST00000553923 CPS1P31327 1500 aa0.45□□□□□ -2.34
SRP54-204ENST00000553923 ITSN1Q15811 1721 aa0.45□□□□□ -2.34
SRP54-204ENST00000553923 WIZO95785 1651 aa0.45□□□□□ -2.34
SRP54-204ENST00000553923 EEA1Q15075 1411 aa0.45□□□□□ -2.34
SRP54-204ENST00000553923 NAV3Q8IVL0 2385 aa0.45□□□□□ -2.34
SRP54-204ENST00000553923 NHSQ6T4R5 1651 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 FSIP2Q5CZC0 6907 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 H0YAA0 97 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 IAPPP10997 89 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 SERF2P84101 59 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 MINOS1Q5TGZ0 78 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 NESP48681 1621 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 CHD9Q3L8U1 2897 aa0.44□□□□□ -2.34
SRP54-204ENST00000553923 ABCC6O95255 1503 aa0.43□□□□□ -2.34
SRP54-204ENST00000553923 TTC28Q96AY4 2481 aa0.43□□□□□ -2.34
SRP54-204ENST00000553923 PRXQ9BXM0 1461 aa0.43□□□□□ -2.34
SRP54-204ENST00000553923 CICQ96RK0 1608 aaPredicted RBP0.43□□□□□ -2.34
SRP54-204ENST00000553923 DEFB114Q30KQ6 69 aa0.43□□□□□ -2.34
SRP54-204ENST00000553923 GOLGA4Q13439 2230 aaKnown RBP0.43□□□□□ -2.34
SRP54-204ENST00000553923 NRAPQ86VF7 1730 aa0.43□□□□□ -2.34
SRP54-204ENST00000553923 ANKRD17O75179 2603 aaKnown RBP0.42□□□□□ -2.34
SRP54-204ENST00000553923 DEFB130BP0DP73 79 aa0.42□□□□□ -2.34
SRP54-204ENST00000553923 DEFB130AP0DP74 79 aa0.42□□□□□ -2.34
SRP54-204ENST00000553923 ABCA6Q8N139 1617 aa0.42□□□□□ -2.34
SRP54-204ENST00000553923 ZNF469Q96JG9 3925 aaPredicted RBP0.42□□□□□ -2.34
SRP54-204ENST00000553923 APCP25054 2843 aa0.42□□□□□ -2.34
SRP54-204ENST00000553923 DDX60LQ5H9U9 1706 aaKnown RBP0.41□□□□□ -2.34
SRP54-204ENST00000553923 PIEZO2Q9H5I5 2752 aa0.41□□□□□ -2.34
SRP54-204ENST00000553923 FRAS1Q86XX4 4008 aa0.41□□□□□ -2.34
SRP54-204ENST00000553923 H0YGG7 62 aa0.41□□□□□ -2.34
SRP54-204ENST00000553923 DEFB135Q30KP9 77 aa0.41□□□□□ -2.34
SRP54-204ENST00000553923 CELSR2Q9HCU4 2923 aa0.41□□□□□ -2.34
SRP54-204ENST00000553923 URB1O60287 2271 aaKnown RBP0.41□□□□□ -2.34
SRP54-204ENST00000553923 ANK2Q01484 3957 aa0.41□□□□□ -2.34
SRP54-204ENST00000553923 PARP4Q9UKK3 1724 aaKnown RBP0.41□□□□□ -2.34
SRP54-204ENST00000553923 NOTCH1P46531 2555 aa0.41□□□□□ -2.34
SRP54-204ENST00000553923 TIAM1Q13009 1591 aa0.4□□□□□ -2.34
SRP54-204ENST00000553923 UGGT1Q9NYU2 1555 aa0.4□□□□□ -2.34
SRP54-204ENST00000553923 ABCA10Q8WWZ4 1543 aa0.4□□□□□ -2.35
SRP54-204ENST00000553923 FBN2P35556 2912 aa0.4□□□□□ -2.35
SRP54-204ENST00000553923 CACNA1EQ15878 2313 aa0.4□□□□□ -2.35
SRP54-204ENST00000553923 LYNX1G3V0Z9 82 aa0.4□□□□□ -2.35
SRP54-204ENST00000553923 M0R2T5 61 aa0.4□□□□□ -2.35
SRP54-204ENST00000553923 MUC5ACP98088 5654 aa0.4□□□□□ -2.35
SRP54-204ENST00000553923 USF3Q68DE3 2245 aa0.4□□□□□ -2.35
SRP54-204ENST00000553923 C6orf48Q9UBA6 75 aa0.39□□□□□ -2.35
SRP54-204ENST00000553923 PLXNC1O60486 1568 aa0.39□□□□□ -2.35
SRP54-204ENST00000553923 THOC2Q8NI27 1593 aaKnown RBP0.39□□□□□ -2.35
SRP54-204ENST00000553923 ZNF292O60281 2723 aa0.39□□□□□ -2.35
SRP54-204ENST00000553923 AHCTF1Q8WYP5 2266 aa0.39□□□□□ -2.35
SRP54-204ENST00000553923 C4AP0C0L4 1744 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 C4BP0C0L5 1744 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 GLI2P10070 1586 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 TJP1Q07157 1748 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 DEPDC5O75140 1603 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 POLQO75417 2590 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 KIAA0586Q9BVV6 1533 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 CACNA1HO95180 2353 aa0.38□□□□□ -2.35
SRP54-204ENST00000553923 PTPRQQ9UMZ3 2332 aa0.37□□□□□ -2.35
SRP54-204ENST00000553923 ABCA12Q86UK0 2595 aa0.37□□□□□ -2.35
SRP54-204ENST00000553923 IGIPA6NJ69 53 aa0.37□□□□□ -2.35
SRP54-204ENST00000553923 PLNP26678 52 aa0.37□□□□□ -2.35
SRP54-204ENST00000553923 TNCP24821 2201 aa0.36□□□□□ -2.35
SRP54-204ENST00000553923 PRM1P04553 51 aa0.36□□□□□ -2.35
SRP54-204ENST00000553923 DEFB106AQ8N104 65 aa0.36□□□□□ -2.35
SRP54-204ENST00000553923 LINC00308Q8TCZ7 52 aa0.36□□□□□ -2.35
SRP54-204ENST00000553923 TMEM167BQ9NRX6 74 aa0.36□□□□□ -2.35
SRP54-204ENST00000553923 TIMM8BQ9Y5J9 83 aaPredicted RBP0.36□□□□□ -2.35
SRP54-204ENST00000553923 TENM4Q6N022 2769 aa0.36□□□□□ -2.35
SRP54-204ENST00000553923 ALS2Q96Q42 1657 aa0.36□□□□□ -2.35
SRP54-204ENST00000553923 BDP1A6H8Y1 2624 aa0.35□□□□□ -2.35
SRP54-204ENST00000553923 SPTBN2O15020 2390 aa0.35□□□□□ -2.35
SRP54-204ENST00000553923 H0YGX0 51 aa0.35□□□□□ -2.35
SRP54-204ENST00000553923 PRLHP81277 87 aa0.35□□□□□ -2.35
SRP54-204ENST00000553923 WT1-ASQ06250 92 aa0.35□□□□□ -2.35
SRP54-204ENST00000553923 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.35□□□□□ -2.354e-8■■■■■ 27.5
SRP54-204ENST00000553923 PLCE1Q9P212 2302 aa0.35□□□□□ -2.35
SRP54-204ENST00000553923 RNF17Q9BXT8 1623 aaKnown RBP0.35□□□□□ -2.35
SRP54-204ENST00000553923 C2CD3Q4AC94 2353 aa0.34□□□□□ -2.35
SRP54-204ENST00000553923 PIEZO1Q92508 2521 aa0.34□□□□□ -2.35
SRP54-204ENST00000553923 C3P01024 1663 aa0.34□□□□□ -2.35
SRP54-204ENST00000553923 CSMD3Q7Z407 3707 aa0.34□□□□□ -2.35
SRP54-204ENST00000553923 RPS27P42677 84 aaKnown RBP0.34□□□□□ -2.36
SRP54-204ENST00000553923 RPS27LQ71UM5 84 aaKnown RBP0.34□□□□□ -2.36
SRP54-204ENST00000553923 ABRACLQ9P1F3 81 aa0.34□□□□□ -2.36
SRP54-204ENST00000553923 S4R3F8 94 aa0.34□□□□□ -2.36
SRP54-204ENST00000553923 OTOGQ6ZRI0 2925 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms