RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 NHP2Q9NX24 153 aaKnown RBP5.93□□□□□ -1.46
LIMA1-211ENST00000552338 TRAV23DV6A0A075B6W5 121 aa5.92□□□□□ -1.46
LIMA1-211ENST00000552338 FAM229AH3BQW9 127 aa5.92□□□□□ -1.46
LIMA1-211ENST00000552338 RAB37Q96AX2 223 aa5.92□□□□□ -1.46
LIMA1-211ENST00000552338 RPL37AP8A6NKH3 93 aa5.91□□□□□ -1.46
LIMA1-211ENST00000552338 REG3GQ6UW15 175 aa5.91□□□□□ -1.46
LIMA1-211ENST00000552338 OR13C6PQ8NH95 151 aa5.91□□□□□ -1.46
LIMA1-211ENST00000552338 SMIM11BQ8TCY0 68 aa5.91□□□□□ -1.46
LIMA1-211ENST00000552338 PSORS1C2Q9UIG4 136 aa5.91□□□□□ -1.46
LIMA1-211ENST00000552338 GAGE10A6NGK3 116 aa5.9□□□□□ -1.46
LIMA1-211ENST00000552338 ZNF73O43830 326 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-211ENST00000552338 RPL13AP40429 203 aaKnown RBP5.9□□□□□ -1.46
LIMA1-211ENST00000552338 KRTAP10-4P60372 401 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-211ENST00000552338 UBE2BP63146 152 aa5.9□□□□□ -1.46
LIMA1-211ENST00000552338 KRTAP13-1Q8IUC0 172 aa5.9□□□□□ -1.46
LIMA1-211ENST00000552338 EPPK1P58107 5090 aaKnown RBP5.89□□□□□ -1.47
LIMA1-211ENST00000552338 PCP4L1A6NKN8 68 aa5.89□□□□□ -1.47
LIMA1-211ENST00000552338 BCE1O60756 84 aa5.89□□□□□ -1.47
LIMA1-211ENST00000552338 B5MCH6 92 aa5.88□□□□□ -1.47
LIMA1-211ENST00000552338 K7ERJ3 54 aa5.88□□□□□ -1.47
LIMA1-211ENST00000552338 TSPAN13O95857 204 aa5.88□□□□□ -1.47
LIMA1-211ENST00000552338 INAFM2P0DMQ5 153 aa5.88□□□□□ -1.47
LIMA1-211ENST00000552338 ELOF1P60002 83 aaKnown RBP5.88□□□□□ -1.47
LIMA1-211ENST00000552338 C6orf99Q4VX62 202 aa5.88□□□□□ -1.47
LIMA1-211ENST00000552338 DIRC1Q969H9 104 aa5.88□□□□□ -1.47
LIMA1-211ENST00000552338 H0YGX0 51 aa5.87□□□□□ -1.47
LIMA1-211ENST00000552338 TAX1BP3O14907 124 aa5.87□□□□□ -1.47
LIMA1-211ENST00000552338 HAMPP81172 84 aa5.87□□□□□ -1.47
LIMA1-211ENST00000552338 COL5A1-AS1Q5SY13 56 aa5.87□□□□□ -1.47
LIMA1-211ENST00000552338 Q6ZRX8 168 aa5.87□□□□□ -1.47
LIMA1-211ENST00000552338 KRTAP4-8Q9BYQ9 185 aa5.87□□□□□ -1.47
LIMA1-211ENST00000552338 VPS13BQ7Z7G8 4022 aa5.87□□□□□ -1.47
LIMA1-211ENST00000552338 A0A1B0GX51 115 aa5.86□□□□□ -1.47
LIMA1-211ENST00000552338 C9orf118A6NHY6 69 aa5.86□□□□□ -1.47
LIMA1-211ENST00000552338 ZNF861PO60384 105 aa5.86□□□□□ -1.47
LIMA1-211ENST00000552338 IGLV7-43P04211 117 aa5.86□□□□□ -1.47
LIMA1-211ENST00000552338 HSPG2P98160 4391 aa5.86□□□□□ -1.47
LIMA1-211ENST00000552338 TRIAP1O43715 76 aa5.85□□□□□ -1.47
LIMA1-211ENST00000552338 VAMP3Q15836 100 aa5.85□□□□□ -1.47
LIMA1-211ENST00000552338 BATFQ16520 125 aa5.85□□□□□ -1.47
LIMA1-211ENST00000552338 Q8N1X5 172 aa5.85□□□□□ -1.47
LIMA1-211ENST00000552338 RYR1P21817 5038 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 ETDCA0A1B0GVM5 59 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 COX6CP09669 75 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 COX7BP24311 80 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 RPL37AP61513 92 aaKnown RBP5.84□□□□□ -1.47
LIMA1-211ENST00000552338 C1orf137Q5JT78 98 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 LINC00575Q6W349 94 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 Q9BRP9 147 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 DHRS4-AS1Q9P1J3 65 aa5.84□□□□□ -1.47
LIMA1-211ENST00000552338 SMR3BP02814 79 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-211ENST00000552338 PLA2G1BP04054 148 aaKnown RBP5.83□□□□□ -1.48
LIMA1-211ENST00000552338 FAM19A1Q7Z5A9 133 aa5.83□□□□□ -1.48
LIMA1-211ENST00000552338 SMCR5Q8TEV8 140 aa5.83□□□□□ -1.48
LIMA1-211ENST00000552338 KRTAP17-1Q9BYP8 105 aa5.83□□□□□ -1.48
LIMA1-211ENST00000552338 H7C2G1 150 aa5.82□□□□□ -1.48
LIMA1-211ENST00000552338 Q1RN00 199 aa5.82□□□□□ -1.48
LIMA1-211ENST00000552338 SPINK6Q6UWN8 80 aa5.82□□□□□ -1.48
LIMA1-211ENST00000552338 FAT1Q14517 4588 aa5.81□□□□□ -1.48
LIMA1-211ENST00000552338 UBE2AP49459 152 aa5.81□□□□□ -1.48
LIMA1-211ENST00000552338 LYRM7Q5U5X0 104 aa5.81□□□□□ -1.48
LIMA1-211ENST00000552338 BIRC6Q9NR09 4857 aa5.81□□□□□ -1.48
LIMA1-211ENST00000552338 TRBV20-1A0A075B6N2 111 aa5.8□□□□□ -1.48
LIMA1-211ENST00000552338 A0A1W2PPM0 123 aa5.8□□□□□ -1.48
LIMA1-211ENST00000552338 H3BUT2 72 aa5.8□□□□□ -1.48
LIMA1-211ENST00000552338 PSMB2P49721 201 aa5.8□□□□□ -1.48
LIMA1-211ENST00000552338 PRLHP81277 87 aa5.8□□□□□ -1.48
LIMA1-211ENST00000552338 KIAA1109Q2LD37 5005 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 hADV29S1A0JD25 119 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 LST1O00453 97 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 SLC25A20O43772 301 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 TRACP01848 142 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 SPRR1BP22528 89 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 Q5VSD8 79 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-211ENST00000552338 FAM218AQ96MZ4 157 aa5.79□□□□□ -1.48
LIMA1-211ENST00000552338 IGLV5-48A0A075B6I7 105 aa5.78□□□□□ -1.48
LIMA1-211ENST00000552338 ERC2-IT1O76042 136 aa5.78□□□□□ -1.48
LIMA1-211ENST00000552338 SNCGO76070 127 aa5.78□□□□□ -1.48
LIMA1-211ENST00000552338 OCIAD2Q56VL3 154 aa5.78□□□□□ -1.48
LIMA1-211ENST00000552338 PPDPFLQ8WWR9 84 aa5.78□□□□□ -1.48
LIMA1-211ENST00000552338 H3BQ85 93 aa5.77□□□□□ -1.49
LIMA1-211ENST00000552338 TCL1BO95988 128 aa5.77□□□□□ -1.49
LIMA1-211ENST00000552338 SCGB1C2P0DMR2 95 aa5.77□□□□□ -1.49
LIMA1-211ENST00000552338 FABP2P12104 132 aa5.77□□□□□ -1.49
LIMA1-211ENST00000552338 LINC01547P58512 204 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-211ENST00000552338 LINC00483Q53H64 154 aa5.77□□□□□ -1.49
LIMA1-211ENST00000552338 CLEC2BQ92478 149 aa5.76□□□□□ -1.49
LIMA1-211ENST00000552338 LINC01600Q96MT4 127 aa5.76□□□□□ -1.49
LIMA1-211ENST00000552338 NAA38Q9BRA0 125 aaKnown RBP5.76□□□□□ -1.49
LIMA1-211ENST00000552338 HIGD2AQ9BW72 106 aa5.76□□□□□ -1.49
LIMA1-211ENST00000552338 KRTAP1-4P0C5Y4 121 aa5.75□□□□□ -1.49
LIMA1-211ENST00000552338 ATXN8Q156A1 80 aa5.75□□□□□ -1.49
LIMA1-211ENST00000552338 SPRR4Q96PI1 79 aa5.75□□□□□ -1.49
LIMA1-211ENST00000552338 KRTAP9-2Q9BYQ4 174 aa5.75□□□□□ -1.49
LIMA1-211ENST00000552338 ZNF706Q9Y5V0 76 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-211ENST00000552338 PKHD1L1Q86WI1 4243 aa5.73□□□□□ -1.49
LIMA1-211ENST00000552338 TEX49A0A1B0GTD5 131 aa5.73□□□□□ -1.49
LIMA1-211ENST00000552338 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-211ENST00000552338 FAM229BQ4G0N7 80 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms