RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 USMG5Q96IX5 58 aa2.5□□□□□ -2.01
VPS29-210ENST00000552130 KIF21BO75037 1637 aa2.5□□□□□ -2.01
VPS29-210ENST00000552130 DOPEY2Q9Y3R5 2298 aa2.49□□□□□ -2.01
VPS29-210ENST00000552130 DDX60LQ5H9U9 1706 aaKnown RBP2.49□□□□□ -2.01
VPS29-210ENST00000552130 DEFB123Q8N688 67 aa2.49□□□□□ -2.01
VPS29-210ENST00000552130 COX6B1P14854 86 aa2.47□□□□□ -2.01
VPS29-210ENST00000552130 CRIP1P50238 77 aa2.47□□□□□ -2.01
VPS29-210ENST00000552130 SORL1Q92673 2214 aa2.46□□□□□ -2.01
VPS29-210ENST00000552130 K7EQZ3 153 aa2.46□□□□□ -2.02
VPS29-210ENST00000552130 MRPL34Q9BQ48 92 aaKnown RBP2.45□□□□□ -2.02
VPS29-210ENST00000552130 COL6A6A6NMZ7 2263 aa2.45□□□□□ -2.02
VPS29-210ENST00000552130 FAM208AQ9UK61 1670 aaKnown RBP2.44□□□□□ -2.02
VPS29-210ENST00000552130 J3QKU1 62 aa2.44□□□□□ -2.02
VPS29-210ENST00000552130 KRTAP12-4P60329 112 aa2.44□□□□□ -2.02
VPS29-210ENST00000552130 CNFNQ9BYD5 112 aa2.44□□□□□ -2.02
VPS29-210ENST00000552130 BPTFQ12830 3046 aa2.44□□□□□ -2.02
VPS29-210ENST00000552130 SPINK9Q5DT21 86 aa2.43□□□□□ -2.02
VPS29-210ENST00000552130 PLCE1Q9P212 2302 aa2.42□□□□□ -2.02
VPS29-210ENST00000552130 TRIOBPQ9H2D6 2365 aa2.42□□□□□ -2.02
VPS29-210ENST00000552130 SAMD9LQ8IVG5 1584 aa2.41□□□□□ -2.02
VPS29-210ENST00000552130 H0YGX0 51 aa2.41□□□□□ -2.02
VPS29-210ENST00000552130 C10orf95Q9H7T3 257 aa2.41□□□□□ -2.02
VPS29-210ENST00000552130 CDKN2A-AS1Q9UH64 79 aa2.41□□□□□ -2.02
VPS29-210ENST00000552130 PIEZO2Q9H5I5 2752 aa2.41□□□□□ -2.02
VPS29-210ENST00000552130 DEPDC5O75140 1603 aa2.4□□□□□ -2.03
VPS29-210ENST00000552130 LINC01546A6NGU7 62 aa2.4□□□□□ -2.03
VPS29-210ENST00000552130 COX6B2Q6YFQ2 88 aa2.4□□□□□ -2.03
VPS29-210ENST00000552130 ATP7AQ04656 1500 aa2.4□□□□□ -2.03
VPS29-210ENST00000552130 TNRC6CQ9HCJ0 1690 aaKnown RBP2.4□□□□□ -2.03
VPS29-210ENST00000552130 RP1L1Q8IWN7 2480 aaPredicted RBP2.4□□□□□ -2.03
VPS29-210ENST00000552130 COX6A2Q02221 97 aa2.39□□□□□ -2.03
VPS29-210ENST00000552130 CCL22O00626 93 aa2.38□□□□□ -2.03
VPS29-210ENST00000552130 PRO0255Q9UI72 69 aa2.38□□□□□ -2.03
VPS29-210ENST00000552130 TIMM8BQ9Y5J9 83 aaPredicted RBP2.37□□□□□ -2.03
VPS29-210ENST00000552130 ASH1LQ9NR48 2969 aaKnown RBP2.37□□□□□ -2.03
VPS29-210ENST00000552130 HMCN1Q96RW7 5635 aa2.36□□□□□ -2.03
VPS29-210ENST00000552130 Q6ZSA8 131 aa2.36□□□□□ -2.03
VPS29-210ENST00000552130 TOGARAM1Q9Y4F4 1720 aa2.36□□□□□ -2.03
VPS29-210ENST00000552130 TRPM2O94759 1503 aa2.36□□□□□ -2.03
VPS29-210ENST00000552130 IQGAP1P46940 1657 aa2.35□□□□□ -2.03
VPS29-210ENST00000552130 CDC42BPAQ5VT25 1732 aa2.35□□□□□ -2.03
VPS29-210ENST00000552130 NDUFA3O95167 84 aa2.35□□□□□ -2.03
VPS29-210ENST00000552130 LINC00158P58513 81 aa2.35□□□□□ -2.03
VPS29-210ENST00000552130 Q8IZM0 81 aa2.35□□□□□ -2.03
VPS29-210ENST00000552130 ROS1P08922 2347 aa2.35□□□□□ -2.03
VPS29-210ENST00000552130 PTPRZ1P23471 2315 aaPredicted RBP2.35□□□□□ -2.03
VPS29-210ENST00000552130 PRO3102Q9H379 93 aa2.34□□□□□ -2.03
VPS29-210ENST00000552130 SPINK4O60575 86 aa2.33□□□□□ -2.04
VPS29-210ENST00000552130 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
VPS29-210ENST00000552130 PTPRQQ9UMZ3 2332 aa2.31□□□□□ -2.04
VPS29-210ENST00000552130 C2CD3Q4AC94 2353 aa2.31□□□□□ -2.04
VPS29-210ENST00000552130 DDX60Q8IY21 1712 aaKnown RBP2.3□□□□□ -2.04
VPS29-210ENST00000552130 LOC730098B7Z3J9 87 aa2.29□□□□□ -2.04
VPS29-210ENST00000552130 USF3Q68DE3 2245 aa2.29□□□□□ -2.04
VPS29-210ENST00000552130 TMEM167BQ9NRX6 74 aa2.28□□□□□ -2.04
VPS29-210ENST00000552130 C4AP0C0L4 1744 aa2.28□□□□□ -2.05
VPS29-210ENST00000552130 A0A0D9SG42 100 aa2.27□□□□□ -2.05
VPS29-210ENST00000552130 LYNX1G3V0Z9 82 aa2.27□□□□□ -2.05
VPS29-210ENST00000552130 HIVEP2P31629 2446 aa2.27□□□□□ -2.05
VPS29-210ENST00000552130 NFAT5O94916 1531 aa2.27□□□□□ -2.05
VPS29-210ENST00000552130 SPTBN2O15020 2390 aa2.27□□□□□ -2.05
VPS29-210ENST00000552130 C4BP0C0L5 1744 aa2.26□□□□□ -2.05
VPS29-210ENST00000552130 H0YAA0 97 aa2.26□□□□□ -2.05
VPS29-210ENST00000552130 SPRR1AP35321 89 aa2.26□□□□□ -2.05
VPS29-210ENST00000552130 KRTAP12-3P60328 96 aa2.26□□□□□ -2.05
VPS29-210ENST00000552130 LELP1Q5T871 98 aa2.26□□□□□ -2.05
VPS29-210ENST00000552130 Q5VSD8 79 aa2.25□□□□□ -2.05
VPS29-210ENST00000552130 LINC00308Q8TCZ7 52 aa2.25□□□□□ -2.05
VPS29-210ENST00000552130 APLNQ9ULZ1 77 aa2.24□□□□□ -2.05
VPS29-210ENST00000552130 GCC2Q8IWJ2 1684 aa2.24□□□□□ -2.05
VPS29-210ENST00000552130 H1FX-AS1Q4G0G2 97 aa2.21□□□□□ -2.06
VPS29-210ENST00000552130 MINOS1Q5TGZ0 78 aa2.21□□□□□ -2.06
VPS29-210ENST00000552130 CACNA1HO95180 2353 aa2.21□□□□□ -2.06
VPS29-210ENST00000552130 ALMS1Q8TCU4 4167 aa2.19□□□□□ -2.06
VPS29-210ENST00000552130 SPTBN1Q01082 2364 aaKnown RBP2.19□□□□□ -2.06
VPS29-210ENST00000552130 SPRR1BP22528 89 aa2.19□□□□□ -2.06
VPS29-210ENST00000552130 KRTAP21-3Q3LHN1 58 aa2.19□□□□□ -2.06
VPS29-210ENST00000552130 DEFB105AQ8NG35 78 aa2.19□□□□□ -2.06
VPS29-210ENST00000552130 CLTCL1P53675 1640 aa2.19□□□□□ -2.06
VPS29-210ENST00000552130 WNK2Q9Y3S1 2297 aa2.19□□□□□ -2.06
VPS29-210ENST00000552130 LMO7Q8WWI1 1683 aa2.18□□□□□ -2.06
VPS29-210ENST00000552130 PKDREJQ9NTG1 2253 aa2.17□□□□□ -2.06
VPS29-210ENST00000552130 PRB3Q04118 309 aaPredicted RBP2.17□□□□□ -2.06
VPS29-210ENST00000552130 WFDC13Q8IUB5 93 aa2.17□□□□□ -2.06
VPS29-210ENST00000552130 ZNF462Q96JM2 2506 aa2.17□□□□□ -2.06
VPS29-210ENST00000552130 C6orf48Q9UBA6 75 aa2.16□□□□□ -2.06
VPS29-210ENST00000552130 KRTAP10-4P60372 401 aaPredicted RBP2.15□□□□□ -2.07
VPS29-210ENST00000552130 SNRPGP62308 76 aaKnown RBP2.15□□□□□ -2.07
VPS29-210ENST00000552130 TFF3Q07654 80 aa2.14□□□□□ -2.07
VPS29-210ENST00000552130 IAPPP10997 89 aa2.12□□□□□ -2.07
VPS29-210ENST00000552130 SMIM2Q9BVW6 85 aa2.11□□□□□ -2.07
VPS29-210ENST00000552130 REV3LO60673 3130 aa2.11□□□□□ -2.07
VPS29-210ENST00000552130 DEFB130BP0DP73 79 aa2.1□□□□□ -2.07
VPS29-210ENST00000552130 DEFB130AP0DP74 79 aa2.1□□□□□ -2.07
VPS29-210ENST00000552130 F8P00451 2351 aa2.1□□□□□ -2.07
VPS29-210ENST00000552130 GVINP1Q7Z2Y8 2422 aa2.1□□□□□ -2.07
VPS29-210ENST00000552130 ZNF292O60281 2723 aa2.1□□□□□ -2.07
VPS29-210ENST00000552130 KLK9Q2XQG4 91 aa2.09□□□□□ -2.07
VPS29-210ENST00000552130 KNL1Q8NG31 2342 aa2.08□□□□□ -2.08
VPS29-210ENST00000552130 EP400Q96L91 3159 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms