RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 URB2Q14146 1524 aaKnown RBP0.23□□□□□ -2.37
VPS29-205ENST00000548539 ABCC2Q92887 1545 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 ATP7BP35670 1465 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 IGF2RP11717 2491 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 NAV2Q8IVL1 2488 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 FAM208BQ5VWN6 2430 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 CELSR2Q9HCU4 2923 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 SPTBN2O15020 2390 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 DSPP15924 2871 aaKnown RBP0.23□□□□□ -2.37
VPS29-205ENST00000548539 A0A1B0GU69 56 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 IGIPA6NJ69 53 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 H0Y9P7 68 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 I3L2K1 104 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 SPINK4O60575 86 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 FCER1GP30273 86 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 SMIM11AP58511 58 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 GAFA1Q96PS6 74 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 PLCH1Q4KWH8 1693 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 KIAA0556O60303 1618 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 TIAM1Q13009 1591 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 SAMD9Q5K651 1589 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 CPS1P31327 1500 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 PCNX1Q96RV3 2341 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 LRRC9Q6ZRR7 1453 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 FANCD2Q9BXW9 1451 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 SYNE2Q8WXH0 6885 aaKnown RBP0.22□□□□□ -2.37
VPS29-205ENST00000548539 BSNQ9UPA5 3926 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 NHSQ6T4R5 1651 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 PIEZO2Q9H5I5 2752 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 PIGBOS1A0A0B4J2F0 54 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 A0A0D9SFI3 127 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 TRBV6-1A0A0K0K1D8 114 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 A0A1B0GUT8 65 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 SNRPGP15A8MWD9 76 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 I3L3M4 83 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 M0R1W7 72 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 NDUFA4O00483 81 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 MGPP08493 103 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 COX6B1P14854 86 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 COX7BP24311 80 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 TFF3Q07654 80 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 ATXN8Q156A1 80 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 CMC2Q9NRP2 79 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 ZNF292O60281 2723 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 LRRC37A3O60309 1634 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 BIVM-ERCC5R4GMW8 1640 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 CSPG4Q6UVK1 2322 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 ABCA12Q86UK0 2595 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 EFCAB6Q5THR3 1501 aa0.22□□□□□ -2.37
VPS29-205ENST00000548539 LY75O60449 1722 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 PDE4DIPQ5VU43 2346 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 BDP1A6H8Y1 2624 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 CFAP43Q8NDM7 1665 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 PRRC2CQ9Y520 2896 aaKnown RBP0.21□□□□□ -2.38
VPS29-205ENST00000548539 DEPDC5O75140 1603 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 CICQ96RK0 1608 aaPredicted RBP0.21□□□□□ -2.38
VPS29-205ENST00000548539 MAST1Q9Y2H9 1570 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 CPSF4LA6NMK7 179 aaKnown RBP0.21□□□□□ -2.38
VPS29-205ENST00000548539 H0YAA0 97 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 NDUFA3O95167 84 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 KLK9Q2XQG4 91 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 SMIM5Q71RC9 77 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 CNFNQ9BYD5 112 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 CDKN2A-AS1Q9UH64 79 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 TIMM8BQ9Y5J9 83 aaPredicted RBP0.21□□□□□ -2.38
VPS29-205ENST00000548539 TULP4Q9NRJ4 1543 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 AKAP13Q12802 2813 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 DDX60LQ5H9U9 1706 aaKnown RBP0.21□□□□□ -2.38
VPS29-205ENST00000548539 TOGARAM1Q9Y4F4 1720 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 TTC28Q96AY4 2481 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 ANKRD50Q9ULJ7 1429 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 CROCC2H7BZ55 1655 aa0.21□□□□□ -2.38
VPS29-205ENST00000548539 KIF21BO75037 1637 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 EIF2AK4Q9P2K8 1649 aaKnown RBP0.2□□□□□ -2.38
VPS29-205ENST00000548539 AKAP6Q13023 2319 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 IQGAP2Q13576 1575 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 CHD7Q9P2D1 2997 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 SMIM27A0A1W2PRY6 76 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 K7EQZ3 153 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 SPRR1AP35321 89 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 ATP5EP2Q5VTU8 51 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 TOMM5Q8N4H5 51 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 SMIM4Q8WVI0 70 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 KCNQ1DNQ9H478 68 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 EP300Q09472 2414 aaPredicted RBP0.2□□□□□ -2.38
VPS29-205ENST00000548539 C4AP0C0L4 1744 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 C4BP0C0L5 1744 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 QSER1Q2KHR3 1735 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 TPRP12270 2363 aaKnown RBP0.2□□□□□ -2.38
VPS29-205ENST00000548539 CHD9Q3L8U1 2897 aa0.2□□□□□ -2.38
VPS29-205ENST00000548539 NFAT5O94916 1531 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 A0A0G2JMZ2 1700 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 LRRC37A2A6NM11 1700 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 DDX60Q8IY21 1712 aaKnown RBP0.19□□□□□ -2.38
VPS29-205ENST00000548539 IQGAP1P46940 1657 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 TNRC6CQ9HCJ0 1690 aaKnown RBP0.19□□□□□ -2.38
VPS29-205ENST00000548539 FAM208AQ9UK61 1670 aaKnown RBP0.19□□□□□ -2.38
VPS29-205ENST00000548539 ETDCA0A1B0GVM5 59 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 LINC01546A6NGU7 62 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 LINC00158P58513 81 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms