RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 VAMP3Q15836 100 aa9.95□□□□□ -0.82
PRPF40A-212ENST00000545856 RYR1P21817 5038 aa9.95□□□□□ -0.82
PRPF40A-212ENST00000545856 K7ERJ3 54 aa9.94□□□□□ -0.82
PRPF40A-212ENST00000545856 BCE1O60756 84 aa9.94□□□□□ -0.82
PRPF40A-212ENST00000545856 COX6CP09669 75 aa9.94□□□□□ -0.82
PRPF40A-212ENST00000545856 SMIM11BQ8TCY0 68 aa9.94□□□□□ -0.82
PRPF40A-212ENST00000545856 KRTAP4-16G5E9R7 235 aaPredicted RBP9.93□□□□□ -0.82
PRPF40A-212ENST00000545856 LYRM7Q5U5X0 104 aa9.93□□□□□ -0.82
PRPF40A-212ENST00000545856 PSORS1C2Q9UIG4 136 aa9.93□□□□□ -0.82
PRPF40A-212ENST00000545856 ETDCA0A1B0GVM5 59 aa9.92□□□□□ -0.82
PRPF40A-212ENST00000545856 H0YGX0 51 aa9.92□□□□□ -0.82
PRPF40A-212ENST00000545856 TSPAN13O95857 204 aa9.92□□□□□ -0.82
PRPF40A-212ENST00000545856 C6orf99Q4VX62 202 aa9.92□□□□□ -0.82
PRPF40A-212ENST00000545856 INAFM2P0DMQ5 153 aa9.9□□□□□ -0.82
PRPF40A-212ENST00000545856 ELOF1P60002 83 aaKnown RBP9.9□□□□□ -0.82
PRPF40A-212ENST00000545856 Q6ZRX8 168 aa9.9□□□□□ -0.82
PRPF40A-212ENST00000545856 LINC00528Q8N1L1 170 aa9.9□□□□□ -0.82
PRPF40A-212ENST00000545856 H7C2G1 150 aa9.89□□□□□ -0.83
PRPF40A-212ENST00000545856 A0A1B0GX51 115 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 SNCGO76070 127 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 COX7BP24311 80 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 KIAA1109Q2LD37 5005 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 BIRC6Q9NR09 4857 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 HSPG2P98160 4391 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 B5MCH6 92 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 FAM229AH3BQW9 127 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 PSMB2P49721 201 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 RPL37AP61513 92 aaKnown RBP9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 C1orf137Q5JT78 98 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 KRTAP11-1Q8IUC1 163 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 DHRS4-AS1Q9P1J3 65 aa9.88□□□□□ -0.83
PRPF40A-212ENST00000545856 VPS13BQ7Z7G8 4022 aa9.87□□□□□ -0.83
PRPF40A-212ENST00000545856 C9orf118A6NHY6 69 aa9.87□□□□□ -0.83
PRPF40A-212ENST00000545856 TAX1BP3O14907 124 aa9.87□□□□□ -0.83
PRPF40A-212ENST00000545856 PLA2G1BP04054 148 aaKnown RBP9.87□□□□□ -0.83
PRPF40A-212ENST00000545856 HAMPP81172 84 aa9.87□□□□□ -0.83
PRPF40A-212ENST00000545856 FAM19A1Q7Z5A9 133 aa9.87□□□□□ -0.83
PRPF40A-212ENST00000545856 TRIAP1O43715 76 aa9.86□□□□□ -0.83
PRPF40A-212ENST00000545856 IGLV7-43P04211 117 aa9.86□□□□□ -0.83
PRPF40A-212ENST00000545856 UBE2AP49459 152 aa9.86□□□□□ -0.83
PRPF40A-212ENST00000545856 KRTAP13-1Q8IUC0 172 aa9.86□□□□□ -0.83
PRPF40A-212ENST00000545856 FAT1Q14517 4588 aa9.85□□□□□ -0.83
PRPF40A-212ENST00000545856 SLC25A20O43772 301 aa9.85□□□□□ -0.83
PRPF40A-212ENST00000545856 ZNF861PO60384 105 aa9.85□□□□□ -0.83
PRPF40A-212ENST00000545856 KRTAP3-3Q9BYR6 98 aa9.84□□□□□ -0.83
PRPF40A-212ENST00000545856 KRTAP3-2Q9BYR7 98 aa9.84□□□□□ -0.83
PRPF40A-212ENST00000545856 TRBV20-1A0A075B6N2 111 aa9.82□□□□□ -0.84
PRPF40A-212ENST00000545856 GHRHP01286 108 aa9.82□□□□□ -0.84
PRPF40A-212ENST00000545856 SCGB1C2P0DMR2 95 aa9.82□□□□□ -0.84
PRPF40A-212ENST00000545856 H3BUT2 72 aa9.81□□□□□ -0.84
PRPF40A-212ENST00000545856 LINC00575Q6W349 94 aa9.81□□□□□ -0.84
PRPF40A-212ENST00000545856 A0A1W2PPM0 123 aa9.8□□□□□ -0.84
PRPF40A-212ENST00000545856 SMR3BP02814 79 aaPredicted RBP9.8□□□□□ -0.84
PRPF40A-212ENST00000545856 FABP2P12104 132 aa9.8□□□□□ -0.84
PRPF40A-212ENST00000545856 Q8N1X5 172 aa9.8□□□□□ -0.84
PRPF40A-212ENST00000545856 PRLHP81277 87 aa9.79□□□□□ -0.84
PRPF40A-212ENST00000545856 ZNF706Q9Y5V0 76 aaPredicted RBP9.79□□□□□ -0.84
PRPF40A-212ENST00000545856 H3BQ85 93 aa9.78□□□□□ -0.84
PRPF40A-212ENST00000545856 TRACP01848 142 aa9.78□□□□□ -0.84
PRPF40A-212ENST00000545856 OCIAD2Q56VL3 154 aa9.78□□□□□ -0.84
PRPF40A-212ENST00000545856 SPINK6Q6UWN8 80 aa9.78□□□□□ -0.84
PRPF40A-212ENST00000545856 Q9BRP9 147 aa9.78□□□□□ -0.84
PRPF40A-212ENST00000545856 SRRM2Q9UQ35 2752 aaKnown RBP9.77□□□□□ -0.84
PRPF40A-212ENST00000545856 hADV29S1A0JD25 119 aa9.77□□□□□ -0.84
PRPF40A-212ENST00000545856 LST1O00453 97 aa9.77□□□□□ -0.84
PRPF40A-212ENST00000545856 KRTAP10-4P60372 401 aaPredicted RBP9.77□□□□□ -0.84
PRPF40A-212ENST00000545856 Q5VSD8 79 aa9.77□□□□□ -0.84
PRPF40A-212ENST00000545856 SMCR5Q8TEV8 140 aa9.77□□□□□ -0.84
PRPF40A-212ENST00000545856 ATXN8Q156A1 80 aa9.76□□□□□ -0.85
PRPF40A-212ENST00000545856 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.76□□□□□ -0.85
PRPF40A-212ENST00000545856 PPDPFLQ8WWR9 84 aa9.76□□□□□ -0.85
PRPF40A-212ENST00000545856 HIGD2AQ9BW72 106 aa9.76□□□□□ -0.85
PRPF40A-212ENST00000545856 DNAL4O96015 105 aa9.75□□□□□ -0.85
PRPF40A-212ENST00000545856 CLEC2BQ92478 149 aa9.72□□□□□ -0.85
PRPF40A-212ENST00000545856 FAM218AQ96MZ4 157 aa9.72□□□□□ -0.85
PRPF40A-212ENST00000545856 NAA38Q9BRA0 125 aaKnown RBP9.72□□□□□ -0.85
PRPF40A-212ENST00000545856 IGLV5-48A0A075B6I7 105 aa9.71□□□□□ -0.86
PRPF40A-212ENST00000545856 TCL1BO95988 128 aa9.71□□□□□ -0.86
PRPF40A-212ENST00000545856 SPCS1Q9Y6A9 102 aa9.7□□□□□ -0.86
PRPF40A-212ENST00000545856 SPRR1BP22528 89 aa9.69□□□□□ -0.86
PRPF40A-212ENST00000545856 Q6ZQY7 126 aa9.69□□□□□ -0.86
PRPF40A-212ENST00000545856 GTF2H5Q6ZYL4 71 aa9.69□□□□□ -0.86
PRPF40A-212ENST00000545856 HERC2O95714 4834 aa9.69□□□□□ -0.86
PRPF40A-212ENST00000545856 PKHD1L1Q86WI1 4243 aa9.69□□□□□ -0.86
PRPF40A-212ENST00000545856 LINC00483Q53H64 154 aa9.68□□□□□ -0.86
PRPF40A-212ENST00000545856 SPRR4Q96PI1 79 aa9.68□□□□□ -0.86
PRPF40A-212ENST00000545856 ORMDL1Q9P0S3 153 aa9.68□□□□□ -0.86
PRPF40A-212ENST00000545856 TEX49A0A1B0GTD5 131 aa9.67□□□□□ -0.86
PRPF40A-212ENST00000545856 K7EP34 96 aa9.67□□□□□ -0.86
PRPF40A-212ENST00000545856 ERC2-IT1O76042 136 aa9.67□□□□□ -0.86
PRPF40A-212ENST00000545856 FAM229BQ4G0N7 80 aa9.67□□□□□ -0.86
PRPF40A-212ENST00000545856 TMEM256-PLSCR3K7ERE1 68 aa9.65□□□□□ -0.86
PRPF40A-212ENST00000545856 H3BT86 120 aa9.63□□□□□ -0.87
PRPF40A-212ENST00000545856 LINC01547P58512 204 aaPredicted RBP9.63□□□□□ -0.87
PRPF40A-212ENST00000545856 UBE2V1Q13404 147 aa9.62□□□□□ -0.87
PRPF40A-212ENST00000545856 H3BMG7 143 aa9.61□□□□□ -0.87
PRPF40A-212ENST00000545856 GAGE2AQ6NT46 116 aa9.61□□□□□ -0.87
PRPF40A-212ENST00000545856 ST20-AS1Q8NBB2 130 aa9.61□□□□□ -0.87
PRPF40A-212ENST00000545856 LINC01600Q96MT4 127 aa9.61□□□□□ -0.87
PRPF40A-212ENST00000545856 LAMTOR3Q9UHA4 124 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms