RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TMEM141Q96I45 108 aa5.09□□□□□ -1.59
USP28-215ENST00000545608 KRTAP4-12Q9BQ66 201 aa5.09□□□□□ -1.59
USP28-215ENST00000545608 KRTAP4-8Q9BYQ9 185 aa5.09□□□□□ -1.59
USP28-215ENST00000545608 SPANXCQ9NY87 97 aa5.09□□□□□ -1.59
USP28-215ENST00000545608 NDUFC2-KCTD14E9PQ53 114 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 F8VRH5 84 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 K7ERJ3 54 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 SNCGO76070 127 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 SCGB1C2P0DMR2 95 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 PSMB2P49721 201 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 UBE2BP63146 152 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 LINC01561Q8N1V8 128 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 PRO0461Q9UI25 63 aa5.08□□□□□ -1.6
USP28-215ENST00000545608 IGLV1-50A0A075B6I6 118 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 LOC107984156A0A0G2JMH3 177 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 VPREB1P12018 145 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 C2orf66Q6UXQ4 117 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 SCGB1D4Q6XE38 83 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 ARL17AQ8IVW1 177 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 AMELXQ99217 191 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 RNF213Q63HN8 5207 aa5.07□□□□□ -1.6
USP28-215ENST00000545608 LPAP08519 4548 aa5.06□□□□□ -1.6
USP28-215ENST00000545608 IGIPA6NJ69 53 aa5.06□□□□□ -1.6
USP28-215ENST00000545608 Q6Q795 121 aa5.06□□□□□ -1.6
USP28-215ENST00000545608 TOMM7Q9P0U1 55 aa5.06□□□□□ -1.6
USP28-215ENST00000545608 IGKV2D-26A0A0A0MRZ7 120 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 PRSS2P07478 247 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 IFITM1P13164 125 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 C6orf226Q5I0X4 101 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 FAM19A3Q7Z5A8 133 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 SCGB3A1Q96QR1 104 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 TMEM126AQ9H061 195 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 XAGE1AQ9HD64 81 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 C22orf24Q9Y442 160 aa5.05□□□□□ -1.6
USP28-215ENST00000545608 ZNF815PA8K554 130 aa5.04□□□□□ -1.6
USP28-215ENST00000545608 ZNF861PO60384 105 aa5.04□□□□□ -1.6
USP28-215ENST00000545608 Q8IZM0 81 aa5.04□□□□□ -1.6
USP28-215ENST00000545608 CDKN2A-AS1Q9UH64 79 aa5.04□□□□□ -1.6
USP28-215ENST00000545608 MT-ATP8P03928 68 aa5.03□□□□□ -1.6
USP28-215ENST00000545608 PRR4Q16378 134 aa5.03□□□□□ -1.6
USP28-215ENST00000545608 TOMM6Q96B49 74 aa5.03□□□□□ -1.6
USP28-215ENST00000545608 PRO1854Q9UHT4 67 aa5.03□□□□□ -1.6
USP28-215ENST00000545608 RPL13AP40429 203 aaKnown RBP5.02□□□□□ -1.61
USP28-215ENST00000545608 NDUFV3P56181 108 aaKnown RBP5.02□□□□□ -1.61
USP28-215ENST00000545608 HERVK_113P63121 156 aa5.02□□□□□ -1.61
USP28-215ENST00000545608 ATXN8Q156A1 80 aa5.02□□□□□ -1.61
USP28-215ENST00000545608 IGLV5-39A0A0G2JS06 123 aa5.01□□□□□ -1.61
USP28-215ENST00000545608 COX6CP09669 75 aa5.01□□□□□ -1.61
USP28-215ENST00000545608 TIMM17AQ99595 171 aa5.01□□□□□ -1.61
USP28-215ENST00000545608 SS18L2Q9UHA2 77 aa5.01□□□□□ -1.61
USP28-215ENST00000545608 KRTAP9-6A0A140TA67 174 aa5□□□□□ -1.61
USP28-215ENST00000545608 KRTAP9-7A8MTY7 169 aa5□□□□□ -1.61
USP28-215ENST00000545608 SLC25A20O43772 301 aa5□□□□□ -1.61
USP28-215ENST00000545608 LGALS3P17931 250 aaKnown RBP5□□□□□ -1.61
USP28-215ENST00000545608 MRPL55Q7Z7F7 128 aaKnown RBP5□□□□□ -1.61
USP28-215ENST00000545608 TTTY13Q9BZ97 58 aa5□□□□□ -1.61
USP28-215ENST00000545608 A0A087X002 238 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 A0A0B4J2C4 111 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 RPL37AP8A6NKH3 93 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 SMIM1B2RUZ4 78 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 BCE1O60756 84 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 ACYP1P07311 99 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 CXCL5P42830 114 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 ANKRD29Q8N6D5 301 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 LINC00167Q96N53 147 aa4.99□□□□□ -1.61
USP28-215ENST00000545608 IGLV5-45A0A087WSX0 123 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 FAM240AA0A1B0GVK7 77 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 TINCRA0A1B0GVN0 87 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 C11orf86A6NJI1 115 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 C9JAW5 83 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 TCL1BO95988 128 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 RPL28P46779 137 aaKnown RBP4.98□□□□□ -1.61
USP28-215ENST00000545608 SEC61BP60468 96 aaKnown RBP4.98□□□□□ -1.61
USP28-215ENST00000545608 PMVKQ15126 192 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 Q1RN00 199 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 COX7B2Q8TF08 81 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 PLEKHB2Q96CS7 222 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 KRTAP9-2Q9BYQ4 174 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 IMUPQ9GZP8 106 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 ANAPC11Q9NYG5 84 aa4.98□□□□□ -1.61
USP28-215ENST00000545608 TRBV10-2A0A0K0K1G8 114 aa4.97□□□□□ -1.61
USP28-215ENST00000545608 H3BT86 120 aa4.97□□□□□ -1.61
USP28-215ENST00000545608 CFC1BP0CG36 223 aa4.97□□□□□ -1.61
USP28-215ENST00000545608 CFC1P0CG37 223 aa4.97□□□□□ -1.61
USP28-215ENST00000545608 TMEM170BQ5T4T1 132 aa4.97□□□□□ -1.61
USP28-215ENST00000545608 LCE4AQ5TA78 99 aa4.97□□□□□ -1.61
USP28-215ENST00000545608 TYMSOSQ8TAI1 123 aa4.97□□□□□ -1.61
USP28-215ENST00000545608 IGLV5-37A0A075B6J1 123 aa4.96□□□□□ -1.62
USP28-215ENST00000545608 CRYGAP11844 174 aa4.96□□□□□ -1.62
USP28-215ENST00000545608 KRTAP15-1Q3LI76 137 aa4.96□□□□□ -1.62
USP28-215ENST00000545608 GAGE2AQ6NT46 116 aa4.96□□□□□ -1.62
USP28-215ENST00000545608 COPS9Q8WXC6 57 aa4.96□□□□□ -1.62
USP28-215ENST00000545608 LEPROTO15243 131 aa4.95□□□□□ -1.62
USP28-215ENST00000545608 HERV-K104P63124 156 aa4.95□□□□□ -1.62
USP28-215ENST00000545608 KRTAP13-2Q52LG2 175 aa4.95□□□□□ -1.62
USP28-215ENST00000545608 MEIG1Q5JSS6 88 aa4.95□□□□□ -1.62
USP28-215ENST00000545608 KRTAP13-1Q8IUC0 172 aa4.95□□□□□ -1.62
USP28-215ENST00000545608 J3QQQ9 107 aa4.94□□□□□ -1.62
USP28-215ENST00000545608 UBE2AP49459 152 aa4.94□□□□□ -1.62
USP28-215ENST00000545608 SMIM20Q8N5G0 67 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms