RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 C20orf203Q8NBC4 194 aa3.48□□□□□ -1.85
CPSF7-220ENST00000541963 DEFB104AQ8WTQ1 72 aa3.48□□□□□ -1.85
CPSF7-220ENST00000541963 TOMM6Q96B49 74 aa3.48□□□□□ -1.85
CPSF7-220ENST00000541963 RNF185Q96GF1 192 aa3.48□□□□□ -1.85
CPSF7-220ENST00000541963 TMEM141Q96I45 108 aa3.48□□□□□ -1.85
CPSF7-220ENST00000541963 MRPL35Q9NZE8 188 aaKnown RBP3.48□□□□□ -1.85
CPSF7-220ENST00000541963 IGLV4-60A0A075B6I1 120 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 IGLV10-54A0A075B6I4 117 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.47□□□□□ -1.85
CPSF7-220ENST00000541963 IGKV2D-26A0A0A0MRZ7 120 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 IGKV2-29A2NJV5 120 aaPredicted RBP3.47□□□□□ -1.85
CPSF7-220ENST00000541963 C11orf86A6NJI1 115 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 ATOX1O00244 68 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 TMEM258P61165 79 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 SS18Q15532 418 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 C6orf226Q5I0X4 101 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 LINC01561Q8N1V8 128 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 LINC00526Q96FQ7 95 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 CARD19Q96LW7 228 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 SMIM2Q9BVW6 85 aa3.47□□□□□ -1.85
CPSF7-220ENST00000541963 IGKV3OR2-268A0A0C4DH90 116 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 NDUFC2-KCTD14E9PQ53 114 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 SMKR1H3BMG3 65 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 TCL1BO95988 128 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 LINC00643Q86TS7 51 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 C3orf22Q8N5N4 141 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 PLEKHB2Q96CS7 222 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 SCGB3A1Q96QR1 104 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 TIMM17AQ99595 171 aa3.46□□□□□ -1.86
CPSF7-220ENST00000541963 APOBP04114 4563 aaKnown RBP3.46□□□□□ -1.86
CPSF7-220ENST00000541963 A0A0J9YXY3 114 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 C9JAW5 83 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 INAFM2P0DMQ5 153 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 CRYGAP11844 174 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 LGALS3P17931 250 aaKnown RBP3.45□□□□□ -1.86
CPSF7-220ENST00000541963 C9orf153Q5TBE3 101 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 KRTAP26-1Q6PEX3 210 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 CHCHD10Q8WYQ3 142 aaPredicted RBP3.45□□□□□ -1.86
CPSF7-220ENST00000541963 DPH3Q96FX2 82 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 KRTAP17-1Q9BYP8 105 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 CDC42SE2Q9NRR3 84 aa3.45□□□□□ -1.86
CPSF7-220ENST00000541963 CSDC2Q9Y534 153 aaKnown RBP3.45□□□□□ -1.86
CPSF7-220ENST00000541963 HSPG2P98160 4391 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 IGHV3-64A0A075B6Q5 118 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 LINC00959A0A1B0GUT2 108 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 SMR3BP02814 79 aaPredicted RBP3.44□□□□□ -1.86
CPSF7-220ENST00000541963 LCE1FQ5T754 118 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 DAND5Q8N907 189 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 C9orf163Q8N9P6 203 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 TIMM21Q9BVV7 248 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 PKIGQ9Y2B9 76 aa3.44□□□□□ -1.86
CPSF7-220ENST00000541963 DNAH8Q96JB1 4490 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 IGHV1-58A0A0C4DH39 117 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 CCDC179H3BU77 68 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 TIMM17BO60830 172 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 COX7CP15954 63 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 XCL1P47992 114 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 CNBPP62633 177 aaKnown RBP3.43□□□□□ -1.86
CPSF7-220ENST00000541963 Q5VSD8 79 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 C2orf82Q6UX34 121 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 Q6ZSA8 131 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 UBE2D4Q9Y2X8 147 aa3.43□□□□□ -1.86
CPSF7-220ENST00000541963 J3QQQ9 107 aa3.42□□□□□ -1.86
CPSF7-220ENST00000541963 COX7A2LO14548 114 aa3.42□□□□□ -1.86
CPSF7-220ENST00000541963 LEPROTO15243 131 aa3.42□□□□□ -1.86
CPSF7-220ENST00000541963 BCE1O60756 84 aa3.42□□□□□ -1.86
CPSF7-220ENST00000541963 S100A7L2Q5SY68 101 aa3.42□□□□□ -1.86
CPSF7-220ENST00000541963 ATP5EP2Q5VTU8 51 aa3.42□□□□□ -1.86
CPSF7-220ENST00000541963 GVQW2A0A096LPI5 108 aaPredicted RBP3.41□□□□□ -1.86
CPSF7-220ENST00000541963 TRAV13-1A0A0B4J241 112 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 LST1O00453 97 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 NDUFC2O95298 119 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 TRACP01848 142 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 HAMPP81172 84 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 MRPS36P82909 103 aaKnown RBP3.41□□□□□ -1.86
CPSF7-220ENST00000541963 SDIM1Q6ZPB5 146 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 SCXQ7RTU7 201 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 CIRBP-AS1Q8TBR5 109 aa3.41□□□□□ -1.86
CPSF7-220ENST00000541963 FAM236AA0A1B0GUQ0 79 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 FAM236BA0A1B0GV22 79 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 RPL39P62891 51 aaKnown RBP3.4□□□□□ -1.87
CPSF7-220ENST00000541963 HERVK_113P63121 156 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 CIRBPQ14011 172 aaKnown RBP3.4□□□□□ -1.87
CPSF7-220ENST00000541963 C5orf38Q86SI9 138 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 C15orf56Q8N910 161 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 TTTY13Q9BZ97 58 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 LINC00474Q9P2X8 69 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 PCLOQ9Y6V0 5065 aa3.4□□□□□ -1.87
CPSF7-220ENST00000541963 IGLV4-69A0A075B6H9 119 aa3.39□□□□□ -1.87
CPSF7-220ENST00000541963 ZNF22P17026 224 aaPredicted RBP3.39□□□□□ -1.87
CPSF7-220ENST00000541963 ATP5EP56381 51 aaPredicted RBP3.39□□□□□ -1.87
CPSF7-220ENST00000541963 KRTAP10-6P60371 365 aaPredicted RBP3.39□□□□□ -1.87
CPSF7-220ENST00000541963 HIST1H4AP62805 103 aaKnown RBP3.39□□□□□ -1.87
CPSF7-220ENST00000541963 COX6A2Q02221 97 aa3.39□□□□□ -1.87
CPSF7-220ENST00000541963 SYCNQ0VAF6 134 aa3.39□□□□□ -1.87
CPSF7-220ENST00000541963 RNASE13Q5GAN3 156 aaKnown RBP3.39□□□□□ -1.87
CPSF7-220ENST00000541963 C9orf129Q5T035 196 aaKnown RBP3.39□□□□□ -1.87
CPSF7-220ENST00000541963 FAM19A5Q7Z5A7 132 aaPredicted RBP3.39□□□□□ -1.87
CPSF7-220ENST00000541963 SERP2Q8N6R1 65 aa3.39□□□□□ -1.87
CPSF7-220ENST00000541963 CAMK2N2Q96S95 79 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 161.1 ms