RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 NMSQ5H8A3 153 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 IBA57Q5T440 356 aaKnown RBP1.42□□□□□ -2.18
SYNE1-232ENST00000535081 C9orf153Q5TBE3 101 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 TMEM14EPQ6UXP3 125 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 BAGE3Q86Y29 109 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 BAGE2Q86Y30 109 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 BPIFA4PQ86YQ2 179 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 RAB37Q96AX2 223 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 PRELID3AQ96N28 172 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 SLC50A1Q9BRV3 221 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 NAA60Q9H7X0 242 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 PSORS1C2Q9UIG4 136 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 TRBV20-1A0A075B6N2 111 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 IGHV3-64A0A075B6Q5 118 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 PIGBOS1A0A0B4J2F0 54 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 FAM236AA0A1B0GUQ0 79 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 FAM236BA0A1B0GV22 79 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 SPINK4O60575 86 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 TRACP01848 142 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 BCL2P10415 239 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 UBE2D1P51668 147 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 FOXA3P55318 350 aaPredicted RBP1.41□□□□□ -2.18
SYNE1-232ENST00000535081 PMAIP1Q13794 54 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 RHOHQ15669 191 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 LYRM7Q5U5X0 104 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 EXOC3-AS1Q8N2X6 119 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 ANKRD29Q8N6D5 301 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 LINC00337Q8N6G1 96 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 NUP35Q8NFH5 326 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 Q8TAT8 98 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 FAM213BQ8TBF2 198 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 UBE2WQ96B02 151 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 CARD19Q96LW7 228 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 IMUPQ9GZP8 106 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 KCNIP2Q9NS61 270 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 LAMTOR3Q9UHA4 124 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 ZNF706Q9Y5V0 76 aaPredicted RBP1.41□□□□□ -2.18
SYNE1-232ENST00000535081 MUC2Q02817 5179 aa1.41□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV13-1A0A0B4J241 112 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 TRAV4A0A0B4J268 109 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 TRBV7-7A0A0K0K1E9 115 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 GRIFINA4D1Z8 144 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 RBAKDNA6NC62 111 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 CD3DP04234 171 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 COX7CP15954 63 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 RNASE4P34096 147 aaKnown RBP1.4□□□□□ -2.19
SYNE1-232ENST00000535081 CCL20P78556 96 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 C2orf91Q6ZV80 131 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 LHFPL1Q86WI0 220 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 TEN1Q86WV5 123 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 C9orf163Q8N9P6 203 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 TSKUQ8WUA8 353 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 ODF3Q96PU9 254 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 TRGV9Q99603 122 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 SMIM7Q9BQ49 75 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 GNB1LQ9BYB4 327 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 AGPAT4-IT1Q9H0P7 198 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 MRPL36Q9P0J6 103 aaKnown RBP1.4□□□□□ -2.19
SYNE1-232ENST00000535081 LINC00474Q9P2X8 69 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 ARL2-SNX15V9GYD0 113 aa1.4□□□□□ -2.19
SYNE1-232ENST00000535081 FSIP2Q5CZC0 6907 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 TRAV8-2A0A0B4J237 113 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 FAM24AA6NFZ4 105 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 SSSCA1O60232 199 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 PYYP10082 97 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 FGF6P10767 208 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 CSN1S1P47710 185 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 CFAP126Q5VTH2 177 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 PRR15Q8IV56 129 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 TMEM75Q8N9X5 138 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 COPS9Q8WXC6 57 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 FMC1Q96HJ9 113 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 HIGD1BQ9P298 99 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 GNG13Q9P2W3 67 aa1.39□□□□□ -2.19
SYNE1-232ENST00000535081 TRBV19A0A075B6N1 114 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 IGHV1-24A0A0C4DH33 117 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 TRBV6-4A0A1B0GX49 114 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 A6NED7 52 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 A8MWV9 139 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 F2Z2F3 143 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 H3BRN7 92 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 ATOX1O00244 68 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 IGKCP01834 107 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 ANGP03950 147 aaKnown RBP1.38□□□□□ -2.19
SYNE1-232ENST00000535081 MGST1P10620 155 aaKnown RBP1.38□□□□□ -2.19
SYNE1-232ENST00000535081 MIAQ16674 131 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 LINC01545Q5VT33 79 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 DIRC1Q969H9 104 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 CHCHD1Q96BP2 118 aaKnown RBP1.38□□□□□ -2.19
SYNE1-232ENST00000535081 IL36BQ9NZH7 164 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 TIMM9Q9Y5J7 89 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 SERP1Q9Y6X1 66 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 TNXBP22105 4242 aa1.38□□□□□ -2.19
SYNE1-232ENST00000535081 H3BT86 120 aa1.37□□□□□ -2.19
SYNE1-232ENST00000535081 CST7O76096 145 aa1.37□□□□□ -2.19
SYNE1-232ENST00000535081 LEPROTL1O95214 131 aa1.37□□□□□ -2.19
SYNE1-232ENST00000535081 TCL1BO95988 128 aa1.37□□□□□ -2.19
SYNE1-232ENST00000535081 IGKV1-5P01602 117 aa1.37□□□□□ -2.19
SYNE1-232ENST00000535081 NPC2P61916 151 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms