RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 Q8NAQ8 132 aa7.98□□□□□ -1.13
SYNPO-204ENST00000519664 LY6G6CO95867 125 aa7.98□□□□□ -1.13
SYNPO-204ENST00000519664 CRYBG3Q68DQ2 2970 aa7.97□□□□□ -1.13
SYNPO-204ENST00000519664 C4orf48Q5BLP8 95 aa7.97□□□□□ -1.13
SYNPO-204ENST00000519664 LINC01561Q8N1V8 128 aa7.97□□□□□ -1.13
SYNPO-204ENST00000519664 LINC01600Q96MT4 127 aa7.96□□□□□ -1.13
SYNPO-204ENST00000519664 A0A087WSZ3 146 aa7.96□□□□□ -1.13
SYNPO-204ENST00000519664 REG3GQ6UW15 175 aa7.96□□□□□ -1.14
SYNPO-204ENST00000519664 C7orf33Q8WU49 177 aa7.95□□□□□ -1.14
SYNPO-204ENST00000519664 C2orf48Q96LS8 159 aa7.95□□□□□ -1.14
SYNPO-204ENST00000519664 RELNP78509 3460 aa7.95□□□□□ -1.14
SYNPO-204ENST00000519664 KRTAP24-1Q3LI83 254 aa7.95□□□□□ -1.14
SYNPO-204ENST00000519664 C19orf73Q9NVV2 129 aa7.95□□□□□ -1.14
SYNPO-204ENST00000519664 SPATA3Q8NHX4 192 aa7.95□□□□□ -1.14
SYNPO-204ENST00000519664 LAMA5O15230 3695 aa7.94□□□□□ -1.14
SYNPO-204ENST00000519664 C22orf24Q9Y442 160 aa7.94□□□□□ -1.14
SYNPO-204ENST00000519664 KIAA0087Q14695 138 aa7.94□□□□□ -1.14
SYNPO-204ENST00000519664 IL17DQ8TAD2 202 aa7.93□□□□□ -1.14
SYNPO-204ENST00000519664 KRTAP10-3P60369 221 aa7.92□□□□□ -1.14
SYNPO-204ENST00000519664 FBN2P35556 2912 aa7.92□□□□□ -1.14
SYNPO-204ENST00000519664 LINC00208Q96KT6 92 aa7.92□□□□□ -1.14
SYNPO-204ENST00000519664 LINC00167Q96N53 147 aa7.91□□□□□ -1.14
SYNPO-204ENST00000519664 LINC01556Q5JQF7 62 aa7.91□□□□□ -1.14
SYNPO-204ENST00000519664 PRR15LQ9BU68 103 aa7.91□□□□□ -1.14
SYNPO-204ENST00000519664 Q9BRP9 147 aa7.9□□□□□ -1.14
SYNPO-204ENST00000519664 HIVEP1P15822 2718 aa7.9□□□□□ -1.14
SYNPO-204ENST00000519664 KLKP1Q107X0 134 aa7.9□□□□□ -1.15
SYNPO-204ENST00000519664 KRTAP1-3Q8IUG1 177 aa7.9□□□□□ -1.15
SYNPO-204ENST00000519664 LINC00474Q9P2X8 69 aa7.89□□□□□ -1.15
SYNPO-204ENST00000519664 H7BZZ5 65 aa7.88□□□□□ -1.15
SYNPO-204ENST00000519664 Q6ZRP5 223 aa7.88□□□□□ -1.15
SYNPO-204ENST00000519664 ZFHX4Q86UP3 3567 aa7.87□□□□□ -1.15
SYNPO-204ENST00000519664 DCHS2Q6V1P9 2916 aa7.87□□□□□ -1.15
SYNPO-204ENST00000519664 C9orf129Q5T035 196 aaKnown RBP7.87□□□□□ -1.15
SYNPO-204ENST00000519664 ST20-AS1Q8NBB2 130 aa7.87□□□□□ -1.15
SYNPO-204ENST00000519664 TM2D3Q9BRN9 247 aa7.86□□□□□ -1.15
SYNPO-204ENST00000519664 Q6ZQT0 140 aa7.85□□□□□ -1.15
SYNPO-204ENST00000519664 LINC00588Q9Y4M8 146 aa7.85□□□□□ -1.15
SYNPO-204ENST00000519664 STAB2Q8WWQ8 2551 aa7.85□□□□□ -1.15
SYNPO-204ENST00000519664 DMDP11532 3685 aa7.85□□□□□ -1.15
SYNPO-204ENST00000519664 FAM168BA1KXE4 195 aa7.85□□□□□ -1.15
SYNPO-204ENST00000519664 CIRBP-AS1Q8TBR5 109 aa7.85□□□□□ -1.15
SYNPO-204ENST00000519664 ELOF1P60002 83 aaKnown RBP7.84□□□□□ -1.15
SYNPO-204ENST00000519664 LIMD2Q9BT23 127 aa7.84□□□□□ -1.15
SYNPO-204ENST00000519664 CD164Q04900 197 aa7.84□□□□□ -1.15
SYNPO-204ENST00000519664 CHTF8P0CG12 524 aa7.83□□□□□ -1.16
SYNPO-204ENST00000519664 IGHV6-1A0A0B4J1U7 121 aa7.83□□□□□ -1.16
SYNPO-204ENST00000519664 FAM104AQ969W3 186 aa7.83□□□□□ -1.16
SYNPO-204ENST00000519664 LOC110117498A0A087WWA1 95 aa7.83□□□□□ -1.16
SYNPO-204ENST00000519664 KRTAP1-1Q07627 177 aa7.83□□□□□ -1.16
SYNPO-204ENST00000519664 Q5XG85 94 aa7.83□□□□□ -1.16
SYNPO-204ENST00000519664 PCOTHQ58A44 107 aa7.82□□□□□ -1.16
SYNPO-204ENST00000519664 ERC2-IT1O76042 136 aa7.82□□□□□ -1.16
SYNPO-204ENST00000519664 VPREB1P12018 145 aa7.82□□□□□ -1.16
SYNPO-204ENST00000519664 CR1P17927 2039 aa7.82□□□□□ -1.16
SYNPO-204ENST00000519664 SMIM29Q86T20 159 aa7.81□□□□□ -1.16
SYNPO-204ENST00000519664 NUPR2A6NF83 97 aa7.81□□□□□ -1.16
SYNPO-204ENST00000519664 KRTAP10-11P60412 298 aa7.81□□□□□ -1.16
SYNPO-204ENST00000519664 CASC2Q6XLA1 102 aa7.81□□□□□ -1.16
SYNPO-204ENST00000519664 HRNRQ86YZ3 2850 aaPredicted RBP7.81□□□□□ -1.16
SYNPO-204ENST00000519664 SERTAD4-AS1Q5TG53 156 aa7.8□□□□□ -1.16
SYNPO-204ENST00000519664 PHF5AQ7RTV0 110 aaKnown RBP7.8□□□□□ -1.16
SYNPO-204ENST00000519664 IGLV6-57P01721 117 aa7.8□□□□□ -1.16
SYNPO-204ENST00000519664 APCP25054 2843 aa7.8□□□□□ -1.16
SYNPO-204ENST00000519664 MDFIQ99750 246 aa7.79□□□□□ -1.16
SYNPO-204ENST00000519664 RETNLBQ9BQ08 111 aa7.79□□□□□ -1.16
SYNPO-204ENST00000519664 IGLV5-52A0A0A0MRZ9 124 aa7.79□□□□□ -1.16
SYNPO-204ENST00000519664 H3BNG1 76 aa7.79□□□□□ -1.16
SYNPO-204ENST00000519664 Q6ZRX8 168 aa7.78□□□□□ -1.16
SYNPO-204ENST00000519664 ZNF706Q9Y5V0 76 aaPredicted RBP7.78□□□□□ -1.16
SYNPO-204ENST00000519664 A0A0G2JQZ4 141 aa7.78□□□□□ -1.16
SYNPO-204ENST00000519664 A0A1W2PNN7 141 aa7.78□□□□□ -1.16
SYNPO-204ENST00000519664 hDV103S1A0JD37 113 aa7.78□□□□□ -1.16
SYNPO-204ENST00000519664 PRR34Q9NV39 138 aa7.77□□□□□ -1.17
SYNPO-204ENST00000519664 NIPBLQ6KC79 2804 aaeCLIP7.77□□□□□ -1.17
SYNPO-204ENST00000519664 HCG22E2RYF7 251 aa7.76□□□□□ -1.17
SYNPO-204ENST00000519664 LINC00476Q8WZB0 136 aa7.76□□□□□ -1.17
SYNPO-204ENST00000519664 LINC00612Q8N6U2 182 aa7.75□□□□□ -1.17
SYNPO-204ENST00000519664 GVQW2A0A096LPI5 108 aaPredicted RBP7.74□□□□□ -1.17
SYNPO-204ENST00000519664 C15orf56Q8N910 161 aa7.74□□□□□ -1.17
SYNPO-204ENST00000519664 RPL37AP61513 92 aaKnown RBP7.74□□□□□ -1.17
SYNPO-204ENST00000519664 H0Y9P7 68 aa7.74□□□□□ -1.17
SYNPO-204ENST00000519664 Q8NBF4 154 aa7.74□□□□□ -1.17
SYNPO-204ENST00000519664 CYSTM1Q9H1C7 97 aa7.73□□□□□ -1.17
SYNPO-204ENST00000519664 KMT2BQ9UMN6 2715 aaPredicted RBP7.73□□□□□ -1.17
SYNPO-204ENST00000519664 CASC10Q5T4H9 136 aa7.73□□□□□ -1.17
SYNPO-204ENST00000519664 DNAH10OSP0CZ25 163 aa7.72□□□□□ -1.17
SYNPO-204ENST00000519664 C1orf134Q5TEV5 83 aa7.72□□□□□ -1.17
SYNPO-204ENST00000519664 LINC00528Q8N1L1 170 aa7.72□□□□□ -1.17
SYNPO-204ENST00000519664 EPM2AB3EWF7 344 aa7.72□□□□□ -1.17
SYNPO-204ENST00000519664 A8MUN3 132 aa7.71□□□□□ -1.18
SYNPO-204ENST00000519664 K7ERS5 55 aa7.71□□□□□ -1.18
SYNPO-204ENST00000519664 PRR15Q8IV56 129 aa7.71□□□□□ -1.18
SYNPO-204ENST00000519664 MOBPQ13875 183 aa7.7□□□□□ -1.18
SYNPO-204ENST00000519664 K7EIL1 84 aa7.7□□□□□ -1.18
SYNPO-204ENST00000519664 OBSCN-AS1Q96MR7 158 aa7.7□□□□□ -1.18
SYNPO-204ENST00000519664 MXRA5Q9NR99 2828 aa7.69□□□□□ -1.18
SYNPO-204ENST00000519664 A0A1B0GW54 56 aa7.68□□□□□ -1.18
SYNPO-204ENST00000519664 C1orf64Q8NEQ6 169 aa7.68□□□□□ -1.18
SYNPO-204ENST00000519664 C16orf90A8MZG2 172 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms