RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 DNAH3Q8TD57 4116 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 RGPD2P0DJD1 1756 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 ATP10BO94823 1461 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 PKHD1L1Q86WI1 4243 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 ATP6V1G2-DDX39BF2Z307 99 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 COX7BP24311 80 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 FAUP35544 74 aaKnown RBP-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 SMIM11AP58511 58 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 SPRR2FQ96RM1 72 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 HIVEP1P15822 2718 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 VPS13DQ5THJ4 4388 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 SONP18583 2426 aaKnown RBP-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 VPS8Q8N3P4 1428 aa-0.64□□□□□ -2.51
HMGCS1-207ENST00000514610 GYPAP02724 150 aa-0.65□□□□□ -2.51
HMGCS1-207ENST00000514610 HMGN2P05204 90 aaKnown RBP-0.65□□□□□ -2.51
HMGCS1-207ENST00000514610 RPL38P63173 70 aaKnown RBP-0.65□□□□□ -2.51
HMGCS1-207ENST00000514610 BCORQ6W2J9 1755 aa-0.65□□□□□ -2.51
HMGCS1-207ENST00000514610 CLTCQ00610 1675 aaKnown RBP-0.65□□□□□ -2.51
HMGCS1-207ENST00000514610 PREX1Q8TCU6 1659 aa-0.65□□□□□ -2.51
HMGCS1-207ENST00000514610 MYH4Q9Y623 1939 aa-0.66□□□□□ -2.51
HMGCS1-207ENST00000514610 LRRC9Q6ZRR7 1453 aa-0.66□□□□□ -2.51
HMGCS1-207ENST00000514610 CRYBG1Q9Y4K1 1723 aa-0.66□□□□□ -2.51
HMGCS1-207ENST00000514610 KNL1Q8NG31 2342 aa-0.66□□□□□ -2.51
HMGCS1-207ENST00000514610 A0A1B0GUT8 65 aa-0.66□□□□□ -2.52
HMGCS1-207ENST00000514610 M0R143 59 aa-0.66□□□□□ -2.52
HMGCS1-207ENST00000514610 RGPD8O14715 1765 aaPredicted RBP-0.66□□□□□ -2.52
HMGCS1-207ENST00000514610 RGPD5Q99666 1765 aa-0.66□□□□□ -2.52
HMGCS1-207ENST00000514610 TROQ12816 1431 aaPredicted RBP-0.66□□□□□ -2.52
HMGCS1-207ENST00000514610 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.66□□□□□ -2.523e-22■■■□□ 18.3
HMGCS1-207ENST00000514610 ANK3Q12955 4377 aaKnown RBP-0.66□□□□□ -2.52
HMGCS1-207ENST00000514610 ATP7BP35670 1465 aa-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 AKAP9Q99996 3911 aa-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 TACC2O95359 2948 aa-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 ALKQ9UM73 1620 aa-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 HTTP42858 3142 aa-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 PLGLAQ15195 96 aa-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 APOBP04114 4563 aaKnown RBP-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 QSER1Q2KHR3 1735 aa-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 PRRC2CQ9Y520 2896 aaKnown RBP-0.67□□□□□ -2.52
HMGCS1-207ENST00000514610 LYSTQ99698 3801 aa-0.68□□□□□ -2.52
HMGCS1-207ENST00000514610 EPG5Q9HCE0 2579 aa-0.68□□□□□ -2.52
HMGCS1-207ENST00000514610 NCMAPQ5T1S8 102 aa-0.68□□□□□ -2.52
HMGCS1-207ENST00000514610 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.68□□□□□ -2.52
HMGCS1-207ENST00000514610 HECTD1Q9ULT8 2610 aa-0.68□□□□□ -2.52
HMGCS1-207ENST00000514610 TNRC18O15417 2968 aaPredicted RBP-0.69□□□□□ -2.52
HMGCS1-207ENST00000514610 PKD1L3Q7Z443 1732 aa-0.69□□□□□ -2.52
HMGCS1-207ENST00000514610 CEP162Q5TB80 1403 aa-0.69□□□□□ -2.52
HMGCS1-207ENST00000514610 TEP1Q99973 2627 aaKnown RBP-0.69□□□□□ -2.52
HMGCS1-207ENST00000514610 C9orf92A6NGG3 77 aa-0.69□□□□□ -2.52
HMGCS1-207ENST00000514610 PEA15Q15121 130 aa-0.69□□□□□ -2.52
HMGCS1-207ENST00000514610 NBASA2RRP1 2371 aa-0.69□□□□□ -2.52
HMGCS1-207ENST00000514610 ABCA13Q86UQ4 5058 aa-0.7□□□□□ -2.52
HMGCS1-207ENST00000514610 NDUFA3O95167 84 aa-0.7□□□□□ -2.52
HMGCS1-207ENST00000514610 CYB5AP00167 134 aa-0.7□□□□□ -2.52
HMGCS1-207ENST00000514610 S100A8P05109 93 aa-0.7□□□□□ -2.52
HMGCS1-207ENST00000514610 GAFA1Q96PS6 74 aa-0.7□□□□□ -2.52
HMGCS1-207ENST00000514610 ABCC10Q5T3U5 1492 aa-0.7□□□□□ -2.52
HMGCS1-207ENST00000514610 LRRC7Q96NW7 1537 aa-0.7□□□□□ -2.52
HMGCS1-207ENST00000514610 C3orf79P0CE67 100 aa-0.71□□□□□ -2.52
HMGCS1-207ENST00000514610 DNAH11Q96DT5 4516 aa-0.71□□□□□ -2.52
HMGCS1-207ENST00000514610 SPG11Q96JI7 2443 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 NEXMIFQ5QGS0 1516 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 IQCF6A8MYZ5 107 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 PKIAP61925 76 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 C20orf78Q9BR46 151 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 SNHG12Q9BXW3 62 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 UBR3Q6ZT12 1888 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 MYO3AQ8NEV4 1616 aa-0.72□□□□□ -2.52
HMGCS1-207ENST00000514610 LAMA1P25391 3075 aa-0.73□□□□□ -2.53
HMGCS1-207ENST00000514610 NDUFB1O75438 58 aa-0.73□□□□□ -2.53
HMGCS1-207ENST00000514610 PYY3Q5JQD4 70 aa-0.73□□□□□ -2.53
HMGCS1-207ENST00000514610 AKAP12Q02952 1782 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 TRAV21A0A0B4J279 112 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 MYMXA0A1B0GTQ4 84 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 H3BNG1 76 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 PRO3102Q9H379 93 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 ZZEF1O43149 2961 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 ANKRD11Q6UB99 2663 aaPredicted RBP-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 VPS13BQ7Z7G8 4022 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 PLXNC1O60486 1568 aa-0.74□□□□□ -2.53
HMGCS1-207ENST00000514610 DNAH2Q9P225 4427 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 ANKRD26Q9UPS8 1709 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 SNRPFP62306 86 aaKnown RBP-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 RABAC1Q9UI14 185 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 CCNB3Q8WWL7 1395 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 PLIN4Q96Q06 1357 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 PDE4DIPQ5VU43 2346 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 WIZO95785 1651 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 RGPD1P0DJD0 1748 aa-0.75□□□□□ -2.53
HMGCS1-207ENST00000514610 DNAH1Q9P2D7 4330 aa-0.76□□□□□ -2.53
HMGCS1-207ENST00000514610 DMXL1Q9Y485 3027 aa-0.76□□□□□ -2.53
HMGCS1-207ENST00000514610 LCE6AA0A183 80 aa-0.76□□□□□ -2.53
HMGCS1-207ENST00000514610 LINC00643Q86TS7 51 aa-0.76□□□□□ -2.53
HMGCS1-207ENST00000514610 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.76□□□□□ -2.53
HMGCS1-207ENST00000514610 TIAM2Q8IVF5 1701 aa-0.76□□□□□ -2.53
HMGCS1-207ENST00000514610 ITPR3Q14573 2671 aa-0.76□□□□□ -2.53
HMGCS1-207ENST00000514610 CUBNO60494 3623 aa-0.77□□□□□ -2.53
HMGCS1-207ENST00000514610 FASNP49327 2511 aaKnown RBP-0.77□□□□□ -2.53
HMGCS1-207ENST00000514610 C4AP0C0L4 1744 aa-0.77□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms