RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KCNQ1DNQ9H478 68 aa5.57□□□□□ -1.52
LIMCH1-216ENST00000512820 LINC00476Q8WZB0 136 aa5.56□□□□□ -1.52
LIMCH1-216ENST00000512820 FAM168BA1KXE4 195 aa5.56□□□□□ -1.52
LIMCH1-216ENST00000512820 KRTAP1-1Q07627 177 aa5.56□□□□□ -1.52
LIMCH1-216ENST00000512820 ERC2-IT1O76042 136 aa5.56□□□□□ -1.52
LIMCH1-216ENST00000512820 SPINK6Q6UWN8 80 aa5.56□□□□□ -1.52
LIMCH1-216ENST00000512820 A6NED7 52 aa5.55□□□□□ -1.52
LIMCH1-216ENST00000512820 ZNF706Q9Y5V0 76 aaPredicted RBP5.55□□□□□ -1.52
LIMCH1-216ENST00000512820 Q8N377 158 aa5.55□□□□□ -1.52
LIMCH1-216ENST00000512820 LINC00588Q9Y4M8 146 aa5.54□□□□□ -1.52
LIMCH1-216ENST00000512820 hDV103S1A0JD37 113 aa5.54□□□□□ -1.52
LIMCH1-216ENST00000512820 CFAP47Q6ZTR5 3102 aa5.54□□□□□ -1.52
LIMCH1-216ENST00000512820 HECTD1Q9ULT8 2610 aa5.54□□□□□ -1.52
LIMCH1-216ENST00000512820 DNAH10OSP0CZ25 163 aa5.54□□□□□ -1.52
LIMCH1-216ENST00000512820 PRR15LQ9BU68 103 aa5.54□□□□□ -1.52
LIMCH1-216ENST00000512820 ZZEF1O43149 2961 aa5.54□□□□□ -1.52
LIMCH1-216ENST00000512820 IGLV1-50A0A075B6I6 118 aa5.53□□□□□ -1.52
LIMCH1-216ENST00000512820 Q8NDZ9 215 aa5.53□□□□□ -1.52
LIMCH1-216ENST00000512820 CYSTM1Q9H1C7 97 aa5.53□□□□□ -1.52
LIMCH1-216ENST00000512820 TNRC18O15417 2968 aaPredicted RBP5.53□□□□□ -1.52
LIMCH1-216ENST00000512820 PCOTHQ58A44 107 aa5.53□□□□□ -1.52
LIMCH1-216ENST00000512820 F8P00451 2351 aa5.53□□□□□ -1.52
LIMCH1-216ENST00000512820 K7EQZ3 153 aa5.52□□□□□ -1.53
LIMCH1-216ENST00000512820 CHD6Q8TD26 2715 aa5.52□□□□□ -1.53
LIMCH1-216ENST00000512820 IGHV6-1A0A0B4J1U7 121 aa5.52□□□□□ -1.53
LIMCH1-216ENST00000512820 C1orf64Q8NEQ6 169 aa5.52□□□□□ -1.53
LIMCH1-216ENST00000512820 WDFY3Q8IZQ1 3526 aa5.51□□□□□ -1.53
LIMCH1-216ENST00000512820 RPL37AP61513 92 aaKnown RBP5.5□□□□□ -1.53
LIMCH1-216ENST00000512820 KRTAP10-11P60412 298 aa5.5□□□□□ -1.53
LIMCH1-216ENST00000512820 PMAIP1Q13794 54 aa5.5□□□□□ -1.53
LIMCH1-216ENST00000512820 C4orf48Q5BLP8 95 aa5.5□□□□□ -1.53
LIMCH1-216ENST00000512820 CFAP46Q8IYW2 2715 aa5.5□□□□□ -1.53
LIMCH1-216ENST00000512820 DMXL1Q9Y485 3027 aa5.49□□□□□ -1.53
LIMCH1-216ENST00000512820 PHF5AQ7RTV0 110 aaKnown RBP5.49□□□□□ -1.53
LIMCH1-216ENST00000512820 ATRQ13535 2644 aa5.49□□□□□ -1.53
LIMCH1-216ENST00000512820 CR1P17927 2039 aa5.49□□□□□ -1.53
LIMCH1-216ENST00000512820 C16orf90A8MZG2 172 aa5.49□□□□□ -1.53
LIMCH1-216ENST00000512820 LINC00336Q6ZUF6 198 aa5.49□□□□□ -1.53
LIMCH1-216ENST00000512820 KRTAP24-1Q3LI83 254 aa5.49□□□□□ -1.53
LIMCH1-216ENST00000512820 EPM2AB3EWF7 344 aa5.48□□□□□ -1.53
LIMCH1-216ENST00000512820 A0A1W2PNM2 257 aa5.48□□□□□ -1.53
LIMCH1-216ENST00000512820 COL12A1Q99715 3063 aa5.48□□□□□ -1.53
LIMCH1-216ENST00000512820 A0A0G2JQZ4 141 aa5.47□□□□□ -1.53
LIMCH1-216ENST00000512820 A0A1W2PNN7 141 aa5.47□□□□□ -1.53
LIMCH1-216ENST00000512820 TLX1NBP0CAT3 122 aa5.47□□□□□ -1.53
LIMCH1-216ENST00000512820 GCN1Q92616 2671 aaKnown RBP5.47□□□□□ -1.53
LIMCH1-216ENST00000512820 IGFL1Q6UW32 110 aa5.47□□□□□ -1.53
LIMCH1-216ENST00000512820 PLA2G2DQ9UNK4 145 aa5.47□□□□□ -1.53
LIMCH1-216ENST00000512820 CHTF8P0CG12 524 aa5.46□□□□□ -1.53
LIMCH1-216ENST00000512820 TEX15Q9BXT5 2789 aa5.46□□□□□ -1.54
LIMCH1-216ENST00000512820 IGLV5-48A0A075B6I7 105 aa5.46□□□□□ -1.54
LIMCH1-216ENST00000512820 NUPR2A6NF83 97 aa5.46□□□□□ -1.54
LIMCH1-216ENST00000512820 IGSF10Q6WRI0 2623 aa5.46□□□□□ -1.54
LIMCH1-216ENST00000512820 LIMD2Q9BT23 127 aa5.46□□□□□ -1.54
LIMCH1-216ENST00000512820 H3BPC8 53 aa5.45□□□□□ -1.54
LIMCH1-216ENST00000512820 CASC10Q5T4H9 136 aa5.45□□□□□ -1.54
LIMCH1-216ENST00000512820 CIRBP-AS1Q8TBR5 109 aa5.45□□□□□ -1.54
LIMCH1-216ENST00000512820 FLNCQ14315 2725 aa5.45□□□□□ -1.54
LIMCH1-216ENST00000512820 OCR1Q9BZK8 76 aa5.44□□□□□ -1.54
LIMCH1-216ENST00000512820 NBEAL2Q6ZNJ1 2754 aa5.44□□□□□ -1.54
LIMCH1-216ENST00000512820 TRAV22A0A0B4J277 110 aa5.43□□□□□ -1.54
LIMCH1-216ENST00000512820 A8MWP4 228 aa5.43□□□□□ -1.54
LIMCH1-216ENST00000512820 TP53AIP1Q9HCN2 124 aa5.43□□□□□ -1.54
LIMCH1-216ENST00000512820 USP24Q9UPU5 2620 aa5.43□□□□□ -1.54
LIMCH1-216ENST00000512820 FLNBO75369 2602 aaKnown RBP5.42□□□□□ -1.54
LIMCH1-216ENST00000512820 Q5XG85 94 aa5.42□□□□□ -1.54
LIMCH1-216ENST00000512820 ITPR1Q14643 2758 aa5.42□□□□□ -1.54
LIMCH1-216ENST00000512820 HRNRQ86YZ3 2850 aaPredicted RBP5.41□□□□□ -1.54
LIMCH1-216ENST00000512820 MOBPQ13875 183 aa5.41□□□□□ -1.54
LIMCH1-216ENST00000512820 IGLV5-52A0A0A0MRZ9 124 aa5.41□□□□□ -1.54
LIMCH1-216ENST00000512820 SEC61GP60059 68 aa5.41□□□□□ -1.54
LIMCH1-216ENST00000512820 MDFIQ99750 246 aa5.41□□□□□ -1.54
LIMCH1-216ENST00000512820 ZFHX4Q86UP3 3567 aa5.41□□□□□ -1.54
LIMCH1-216ENST00000512820 DMDP11532 3685 aa5.4□□□□□ -1.54
LIMCH1-216ENST00000512820 PRR15Q8IV56 129 aa5.4□□□□□ -1.54
LIMCH1-216ENST00000512820 IGLV5-37A0A075B6J1 123 aa5.4□□□□□ -1.54
LIMCH1-216ENST00000512820 A8MUN3 132 aa5.4□□□□□ -1.54
LIMCH1-216ENST00000512820 OXTP01178 125 aa5.4□□□□□ -1.54
LIMCH1-216ENST00000512820 LY6G6CO95867 125 aa5.4□□□□□ -1.55
LIMCH1-216ENST00000512820 RETNLBQ9BQ08 111 aa5.39□□□□□ -1.55
LIMCH1-216ENST00000512820 DSCR10P59022 87 aa5.39□□□□□ -1.55
LIMCH1-216ENST00000512820 HELZ2Q9BYK8 2649 aaKnown RBP5.38□□□□□ -1.55
LIMCH1-216ENST00000512820 NBDYA0A0U1RRE5 68 aa5.38□□□□□ -1.55
LIMCH1-216ENST00000512820 SPAG11AQ6PDA7 123 aa5.38□□□□□ -1.55
LIMCH1-216ENST00000512820 ASPMQ8IZT6 3477 aa5.38□□□□□ -1.55
LIMCH1-216ENST00000512820 DCHS1Q96JQ0 3298 aa5.38□□□□□ -1.55
LIMCH1-216ENST00000512820 WIPF1O43516 503 aa5.38□□□□□ -1.55
LIMCH1-216ENST00000512820 SPRR4Q96PI1 79 aa5.37□□□□□ -1.55
LIMCH1-216ENST00000512820 UNC79Q9P2D8 2635 aa5.37□□□□□ -1.55
LIMCH1-216ENST00000512820 K7EIL1 84 aa5.37□□□□□ -1.55
LIMCH1-216ENST00000512820 SETXQ7Z333 2677 aaKnown RBP5.36□□□□□ -1.55
LIMCH1-216ENST00000512820 MGAM2Q2M2H8 2515 aa5.36□□□□□ -1.55
LIMCH1-216ENST00000512820 FP248Q71RG6 208 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-216ENST00000512820 COA5Q86WW8 74 aa5.36□□□□□ -1.55
LIMCH1-216ENST00000512820 KRTAP26-1Q6PEX3 210 aa5.35□□□□□ -1.55
LIMCH1-216ENST00000512820 C1orf134Q5TEV5 83 aa5.35□□□□□ -1.55
LIMCH1-216ENST00000512820 ZANQ9Y493 2812 aa5.34□□□□□ -1.55
LIMCH1-216ENST00000512820 MUC3AQ02505 3323 aa5.34□□□□□ -1.56
LIMCH1-216ENST00000512820 SPRR1AP35321 89 aa5.33□□□□□ -1.56
LIMCH1-216ENST00000512820 CNBPP62633 177 aaKnown RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms