RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 KCNQ1DNQ9H478 68 aa13.44□□□□□ -0.26
C9orf3-222ENST00000496567 PRYO14603 147 aa13.43□□□□□ -0.26
C9orf3-222ENST00000496567 REG3GQ6UW15 175 aa13.43□□□□□ -0.26
C9orf3-222ENST00000496567 FAT1Q14517 4588 aa13.43□□□□□ -0.26
C9orf3-222ENST00000496567 VPS13BQ7Z7G8 4022 aa13.41□□□□□ -0.26
C9orf3-222ENST00000496567 KRTAP17-1Q9BYP8 105 aa13.41□□□□□ -0.26
C9orf3-222ENST00000496567 BCE1O60756 84 aa13.4□□□□□ -0.26
C9orf3-222ENST00000496567 RAB37Q96AX2 223 aa13.4□□□□□ -0.26
C9orf3-222ENST00000496567 TRAV23DV6A0A075B6W5 121 aa13.39□□□□□ -0.27
C9orf3-222ENST00000496567 A0A0B4J2C4 111 aa13.39□□□□□ -0.27
C9orf3-222ENST00000496567 KRTAP10-4P60372 401 aaPredicted RBP13.39□□□□□ -0.27
C9orf3-222ENST00000496567 TAX1BP3O14907 124 aa13.38□□□□□ -0.27
C9orf3-222ENST00000496567 IGLV7-43P04211 117 aa13.37□□□□□ -0.27
C9orf3-222ENST00000496567 SPRR1AP35321 89 aa13.37□□□□□ -0.27
C9orf3-222ENST00000496567 PRO1854Q9UHT4 67 aa13.36□□□□□ -0.27
C9orf3-222ENST00000496567 HERC2O95714 4834 aa13.35□□□□□ -0.27
C9orf3-222ENST00000496567 ZNF73O43830 326 aaPredicted RBP13.34□□□□□ -0.27
C9orf3-222ENST00000496567 FAM19A1Q7Z5A9 133 aa13.34□□□□□ -0.27
C9orf3-222ENST00000496567 ETDCA0A1B0GVM5 59 aa13.33□□□□□ -0.28
C9orf3-222ENST00000496567 UBE2AP49459 152 aa13.33□□□□□ -0.28
C9orf3-222ENST00000496567 RPL13AP40429 203 aaKnown RBP13.32□□□□□ -0.28
C9orf3-222ENST00000496567 RPL28P46779 137 aaKnown RBP13.32□□□□□ -0.28
C9orf3-222ENST00000496567 KRTAP4-16G5E9R7 235 aaPredicted RBP13.31□□□□□ -0.28
C9orf3-222ENST00000496567 ZNF861PO60384 105 aa13.31□□□□□ -0.28
C9orf3-222ENST00000496567 DIRC1Q969H9 104 aa13.31□□□□□ -0.28
C9orf3-222ENST00000496567 NAA38Q9BRA0 125 aaKnown RBP13.31□□□□□ -0.28
C9orf3-222ENST00000496567 H7C2G1 150 aa13.3□□□□□ -0.28
C9orf3-222ENST00000496567 SRRM2Q9UQ35 2752 aaKnown RBP13.29□□□□□ -0.28
C9orf3-222ENST00000496567 TSPAN13O95857 204 aa13.29□□□□□ -0.28
C9orf3-222ENST00000496567 C9orf118A6NHY6 69 aa13.28□□□□□ -0.28
C9orf3-222ENST00000496567 H0Y9J4 135 aa13.28□□□□□ -0.28
C9orf3-222ENST00000496567 SMIM11BQ8TCY0 68 aa13.28□□□□□ -0.28
C9orf3-222ENST00000496567 PRLHP81277 87 aa13.28□□□□□ -0.28
C9orf3-222ENST00000496567 C6orf99Q4VX62 202 aa13.28□□□□□ -0.28
C9orf3-222ENST00000496567 SPINK6Q6UWN8 80 aa13.28□□□□□ -0.28
C9orf3-222ENST00000496567 KRTAP13-1Q8IUC0 172 aa13.28□□□□□ -0.28
C9orf3-222ENST00000496567 H3BUT2 72 aa13.27□□□□□ -0.29
C9orf3-222ENST00000496567 B5MCH6 92 aa13.26□□□□□ -0.29
C9orf3-222ENST00000496567 Q1RN00 199 aa13.26□□□□□ -0.29
C9orf3-222ENST00000496567 KRTAP4-5Q9BYR2 181 aa13.26□□□□□ -0.29
C9orf3-222ENST00000496567 TRBV7-6A0A0J9YX20 115 aa13.25□□□□□ -0.29
C9orf3-222ENST00000496567 Q6ZRX8 168 aa13.25□□□□□ -0.29
C9orf3-222ENST00000496567 A0A1B0GV90 55 aa13.22□□□□□ -0.29
C9orf3-222ENST00000496567 COX7BP24311 80 aa13.22□□□□□ -0.29
C9orf3-222ENST00000496567 VAMP3Q15836 100 aa13.22□□□□□ -0.29
C9orf3-222ENST00000496567 ELOF1P60002 83 aaKnown RBP13.21□□□□□ -0.29
C9orf3-222ENST00000496567 HIGD2AQ9BW72 106 aa13.21□□□□□ -0.29
C9orf3-222ENST00000496567 INAFM2P0DMQ5 153 aa13.2□□□□□ -0.3
C9orf3-222ENST00000496567 PSMB2P49721 201 aa13.2□□□□□ -0.3
C9orf3-222ENST00000496567 A0A1W2PPM0 123 aa13.19□□□□□ -0.3
C9orf3-222ENST00000496567 TRIAP1O43715 76 aa13.17□□□□□ -0.3
C9orf3-222ENST00000496567 SMCR5Q8TEV8 140 aa13.17□□□□□ -0.3
C9orf3-222ENST00000496567 Q9BRP9 147 aa13.17□□□□□ -0.3
C9orf3-222ENST00000496567 DHRS4-AS1Q9P1J3 65 aa13.17□□□□□ -0.3
C9orf3-222ENST00000496567 PKHD1L1Q86WI1 4243 aa13.14□□□□□ -0.31
C9orf3-222ENST00000496567 FABP2P12104 132 aa13.14□□□□□ -0.31
C9orf3-222ENST00000496567 SCGB1C2P0DMR2 95 aa13.12□□□□□ -0.31
C9orf3-222ENST00000496567 H0YGX0 51 aa13.11□□□□□ -0.31
C9orf3-222ENST00000496567 SLC25A20O43772 301 aa13.11□□□□□ -0.31
C9orf3-222ENST00000496567 ZNF706Q9Y5V0 76 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-222ENST00000496567 ERC2-IT1O76042 136 aa13.1□□□□□ -0.31
C9orf3-222ENST00000496567 COX6CP09669 75 aa13.1□□□□□ -0.31
C9orf3-222ENST00000496567 SPCS1Q9Y6A9 102 aa13.09□□□□□ -0.31
C9orf3-222ENST00000496567 LYRM7Q5U5X0 104 aa13.08□□□□□ -0.32
C9orf3-222ENST00000496567 LINC00575Q6W349 94 aa13.08□□□□□ -0.32
C9orf3-222ENST00000496567 ABCA13Q86UQ4 5058 aa13.07□□□□□ -0.32
C9orf3-222ENST00000496567 K7EP34 96 aa13.06□□□□□ -0.32
C9orf3-222ENST00000496567 TCL1BO95988 128 aa13.06□□□□□ -0.32
C9orf3-222ENST00000496567 CLEC2BQ92478 149 aa13.06□□□□□ -0.32
C9orf3-222ENST00000496567 SNCGO76070 127 aa13.05□□□□□ -0.32
C9orf3-222ENST00000496567 SPRR4Q96PI1 79 aa13.05□□□□□ -0.32
C9orf3-222ENST00000496567 hADV29S1A0JD25 119 aa13.04□□□□□ -0.32
C9orf3-222ENST00000496567 KRTAP1-4P0C5Y4 121 aa13.03□□□□□ -0.32
C9orf3-222ENST00000496567 FAM218AQ96MZ4 157 aa13.02□□□□□ -0.33
C9orf3-222ENST00000496567 FLG2Q5D862 2391 aaPredicted RBP13.02□□□□□ -0.33
C9orf3-222ENST00000496567 TRBV20-1A0A075B6N2 111 aa13.01□□□□□ -0.33
C9orf3-222ENST00000496567 A0A1B0GX51 115 aa13□□□□□ -0.33
C9orf3-222ENST00000496567 OXTP01178 125 aa13□□□□□ -0.33
C9orf3-222ENST00000496567 GTF2H5Q6ZYL4 71 aa13□□□□□ -0.33
C9orf3-222ENST00000496567 ST20-AS1Q8NBB2 130 aa13□□□□□ -0.33
C9orf3-222ENST00000496567 GAGE2AQ6NT46 116 aa12.99□□□□□ -0.33
C9orf3-222ENST00000496567 LINC01600Q96MT4 127 aa12.99□□□□□ -0.33
C9orf3-222ENST00000496567 H3BMG7 143 aa12.98□□□□□ -0.33
C9orf3-222ENST00000496567 LST1O00453 97 aa12.98□□□□□ -0.33
C9orf3-222ENST00000496567 ATXN8Q156A1 80 aa12.98□□□□□ -0.33
C9orf3-222ENST00000496567 FAM229BQ4G0N7 80 aa12.98□□□□□ -0.33
C9orf3-222ENST00000496567 UBE2V1Q13404 147 aa12.97□□□□□ -0.33
C9orf3-222ENST00000496567 LINC00483Q53H64 154 aa12.97□□□□□ -0.33
C9orf3-222ENST00000496567 ANAPC11Q9NYG5 84 aa12.97□□□□□ -0.33
C9orf3-222ENST00000496567 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.96□□□□□ -0.33
C9orf3-222ENST00000496567 Q6ZQY7 126 aa12.96□□□□□ -0.33
C9orf3-222ENST00000496567 CRYGAP11844 174 aa12.95□□□□□ -0.34
C9orf3-222ENST00000496567 KRTAP29-1A8MX34 341 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-222ENST00000496567 DEFB105AQ8NG35 78 aa12.94□□□□□ -0.34
C9orf3-222ENST00000496567 TEX49A0A1B0GTD5 131 aa12.94□□□□□ -0.34
C9orf3-222ENST00000496567 SPRR1BP22528 89 aa12.94□□□□□ -0.34
C9orf3-222ENST00000496567 MYCBP2O75592 4640 aa12.93□□□□□ -0.34
C9orf3-222ENST00000496567 IGLV5-48A0A075B6I7 105 aa12.93□□□□□ -0.34
C9orf3-222ENST00000496567 PRR26Q8N8Z3 221 aa12.92□□□□□ -0.34
C9orf3-222ENST00000496567 FAT3Q8TDW7 4589 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms