RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PTPN13Q12923 2485 aa6.32□□□□□ -1.4
SYNE1-230ENST00000495090 A0A1W2PNM2 257 aa6.32□□□□□ -1.4
SYNE1-230ENST00000495090 H3BNG1 76 aa6.32□□□□□ -1.4
SYNE1-230ENST00000495090 Q6ZRP5 223 aa6.32□□□□□ -1.4
SYNE1-230ENST00000495090 Q8NBF4 154 aa6.32□□□□□ -1.4
SYNE1-230ENST00000495090 FN1P02751 2386 aaKnown RBP6.31□□□□□ -1.4
SYNE1-230ENST00000495090 NIPBLQ6KC79 2804 aaeCLIP6.31□□□□□ -1.4
SYNE1-230ENST00000495090 PLA2G2DQ9UNK4 145 aa6.31□□□□□ -1.4
SYNE1-230ENST00000495090 HTN3P15516 51 aa6.31□□□□□ -1.4
SYNE1-230ENST00000495090 Q6ZRX8 168 aa6.31□□□□□ -1.4
SYNE1-230ENST00000495090 NKAPP1Q8N9T2 125 aa6.31□□□□□ -1.4
SYNE1-230ENST00000495090 C1orf64Q8NEQ6 169 aa6.31□□□□□ -1.4
SYNE1-230ENST00000495090 KRTAP10-3P60369 221 aa6.3□□□□□ -1.4
SYNE1-230ENST00000495090 C1orf137Q5JT78 98 aa6.3□□□□□ -1.4
SYNE1-230ENST00000495090 KRTAP4-16G5E9R7 235 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-230ENST00000495090 DEFB105AQ8NG35 78 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 C7orf33Q8WU49 177 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 MYO18BQ8IUG5 2567 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 IGSF10Q6WRI0 2623 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 IGLV5-37A0A075B6J1 123 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 NDUFB1O75438 58 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 TLX1NBP0CAT3 122 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 SPRR1AP35321 89 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 DSCR10P59022 87 aa6.29□□□□□ -1.4
SYNE1-230ENST00000495090 CUBNO60494 3623 aa6.28□□□□□ -1.4
SYNE1-230ENST00000495090 NF1P21359 2839 aa6.28□□□□□ -1.4
SYNE1-230ENST00000495090 SYCNQ0VAF6 134 aa6.28□□□□□ -1.4
SYNE1-230ENST00000495090 WFDC10BQ8IUB3 73 aa6.28□□□□□ -1.4
SYNE1-230ENST00000495090 USP24Q9UPU5 2620 aa6.27□□□□□ -1.41
SYNE1-230ENST00000495090 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-230ENST00000495090 PMAIP1Q13794 54 aa6.27□□□□□ -1.41
SYNE1-230ENST00000495090 SONP18583 2426 aaKnown RBP6.27□□□□□ -1.41
SYNE1-230ENST00000495090 ITPR3Q14573 2671 aa6.27□□□□□ -1.41
SYNE1-230ENST00000495090 ZNF469Q96JG9 3925 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-230ENST00000495090 FAM208BQ5VWN6 2430 aa6.27□□□□□ -1.41
SYNE1-230ENST00000495090 SERTAD4-AS1Q5TG53 156 aa6.27□□□□□ -1.41
SYNE1-230ENST00000495090 Q9BRP9 147 aa6.27□□□□□ -1.41
SYNE1-230ENST00000495090 ZFYVE26Q68DK2 2539 aa6.26□□□□□ -1.41
SYNE1-230ENST00000495090 HCG22E2RYF7 251 aa6.26□□□□□ -1.41
SYNE1-230ENST00000495090 UBR5O95071 2799 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-230ENST00000495090 APCP25054 2843 aa6.25□□□□□ -1.41
SYNE1-230ENST00000495090 K7EQZ3 153 aa6.25□□□□□ -1.41
SYNE1-230ENST00000495090 PRB1P04280 392 aa6.25□□□□□ -1.41
SYNE1-230ENST00000495090 GCN1Q92616 2671 aaKnown RBP6.25□□□□□ -1.41
SYNE1-230ENST00000495090 IGLV1-50A0A075B6I6 118 aa6.25□□□□□ -1.41
SYNE1-230ENST00000495090 ABCA12Q86UK0 2595 aa6.24□□□□□ -1.41
SYNE1-230ENST00000495090 ANK3Q12955 4377 aaKnown RBP6.24□□□□□ -1.41
SYNE1-230ENST00000495090 TRAV22A0A0B4J277 110 aa6.24□□□□□ -1.41
SYNE1-230ENST00000495090 LINC01556Q5JQF7 62 aa6.24□□□□□ -1.41
SYNE1-230ENST00000495090 CENPEQ02224 2701 aa6.24□□□□□ -1.41
SYNE1-230ENST00000495090 NBEAL2Q6ZNJ1 2754 aa6.23□□□□□ -1.41
SYNE1-230ENST00000495090 PSCAO43653 123 aa6.23□□□□□ -1.41
SYNE1-230ENST00000495090 H3BPC8 53 aa6.21□□□□□ -1.41
SYNE1-230ENST00000495090 SPANXA2-OT1Q8N9U9 137 aa6.21□□□□□ -1.41
SYNE1-230ENST00000495090 ST20-AS1Q8NBB2 130 aa6.21□□□□□ -1.41
SYNE1-230ENST00000495090 IGKV2D-24A0A075B6R9 120 aa6.21□□□□□ -1.42
SYNE1-230ENST00000495090 MP68P56378 58 aa6.21□□□□□ -1.42
SYNE1-230ENST00000495090 SETD2Q9BYW2 2564 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-230ENST00000495090 LRCOL1A6NCL2 159 aa6.2□□□□□ -1.42
SYNE1-230ENST00000495090 ZNF462Q96JM2 2506 aa6.19□□□□□ -1.42
SYNE1-230ENST00000495090 FLNAP21333 2647 aaKnown RBP6.19□□□□□ -1.42
SYNE1-230ENST00000495090 MRPL55Q7Z7F7 128 aaKnown RBP6.19□□□□□ -1.42
SYNE1-230ENST00000495090 IGLV8-61A0A075B6I0 122 aa6.19□□□□□ -1.42
SYNE1-230ENST00000495090 RPL37AP8A6NKH3 93 aa6.19□□□□□ -1.42
SYNE1-230ENST00000495090 PSPHP1O15172 72 aa6.18□□□□□ -1.42
SYNE1-230ENST00000495090 LINC00476Q8WZB0 136 aa6.18□□□□□ -1.42
SYNE1-230ENST00000495090 B9D2Q9BPU9 175 aa6.18□□□□□ -1.42
SYNE1-230ENST00000495090 HIVEP2P31629 2446 aa6.17□□□□□ -1.42
SYNE1-230ENST00000495090 KRTAP29-1A8MX34 341 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-230ENST00000495090 DNAH10OSP0CZ25 163 aa6.17□□□□□ -1.42
SYNE1-230ENST00000495090 CCDC168Q8NDH2 2452 aa6.16□□□□□ -1.42
SYNE1-230ENST00000495090 UBE2BP63146 152 aa6.16□□□□□ -1.42
SYNE1-230ENST00000495090 KRTAP7-1Q8IUC3 87 aa6.16□□□□□ -1.42
SYNE1-230ENST00000495090 LIMD2Q9BT23 127 aa6.16□□□□□ -1.42
SYNE1-230ENST00000495090 LINC00588Q9Y4M8 146 aa6.16□□□□□ -1.42
SYNE1-230ENST00000495090 FAM168BA1KXE4 195 aa6.15□□□□□ -1.42
SYNE1-230ENST00000495090 Q5VV11 94 aa6.15□□□□□ -1.42
SYNE1-230ENST00000495090 IGFL1Q6UW32 110 aa6.15□□□□□ -1.42
SYNE1-230ENST00000495090 A8MUN3 132 aa6.15□□□□□ -1.43
SYNE1-230ENST00000495090 REG3GQ6UW15 175 aa6.15□□□□□ -1.43
SYNE1-230ENST00000495090 PRR4Q16378 134 aa6.14□□□□□ -1.43
SYNE1-230ENST00000495090 UBE2AP49459 152 aa6.13□□□□□ -1.43
SYNE1-230ENST00000495090 LINC00208Q96KT6 92 aa6.13□□□□□ -1.43
SYNE1-230ENST00000495090 KMT2BQ9UMN6 2715 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-230ENST00000495090 H3BS24 57 aa6.13□□□□□ -1.43
SYNE1-230ENST00000495090 WFDC13Q8IUB5 93 aa6.13□□□□□ -1.43
SYNE1-230ENST00000495090 Q8N9P0 234 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-230ENST00000495090 H0Y9P7 68 aa6.11□□□□□ -1.43
SYNE1-230ENST00000495090 MTORP42345 2549 aa6.11□□□□□ -1.43
SYNE1-230ENST00000495090 A0A087WSZ3 146 aa6.11□□□□□ -1.43
SYNE1-230ENST00000495090 C9orf163Q8N9P6 203 aa6.11□□□□□ -1.43
SYNE1-230ENST00000495090 CASC2Q6XLA1 102 aa6.1□□□□□ -1.43
SYNE1-230ENST00000495090 DEFB131BA0A096LNP1 70 aa6.09□□□□□ -1.43
SYNE1-230ENST00000495090 PDZD2O15018 2839 aa6.09□□□□□ -1.43
SYNE1-230ENST00000495090 A8MWP4 228 aa6.09□□□□□ -1.44
SYNE1-230ENST00000495090 LOC101927531A0A1B0GV80 90 aa6.08□□□□□ -1.44
SYNE1-230ENST00000495090 CNBPP62633 177 aaKnown RBP6.08□□□□□ -1.44
SYNE1-230ENST00000495090 Q75L30 129 aa6.08□□□□□ -1.44
SYNE1-230ENST00000495090 VWFP04275 2813 aa6.08□□□□□ -1.44
SYNE1-230ENST00000495090 CHKB-CPT1BH3BT56 60 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms