RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 GTF2H5Q6ZYL4 71 aa1.63□□□□□ -2.15
VPS13A-212ENST00000493341 ACBD7Q8N6N7 88 aa1.63□□□□□ -2.15
VPS13A-212ENST00000493341 Q8N8P6 123 aa1.63□□□□□ -2.15
VPS13A-212ENST00000493341 LINC00312Q9Y6C7 94 aa1.63□□□□□ -2.15
VPS13A-212ENST00000493341 TRBV10-3A0A0K0K1G6 114 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 M0R143 59 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 CYB5AP00167 134 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 Q5BKY6 102 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 DSCR8Q96T75 97 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 PRO1933Q9H354 126 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 NBEAL1Q6ZS30 2694 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 MEGF8Q7Z7M0 2845 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 MPC2O95563 127 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 PYY3Q5JQD4 70 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 HEPN1Q6WQI6 88 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 VWFP04275 2813 aa1.62□□□□□ -2.15
VPS13A-212ENST00000493341 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.61□□□□□ -2.15
VPS13A-212ENST00000493341 ZNF137PP52743 207 aa1.61□□□□□ -2.15
VPS13A-212ENST00000493341 TTTY10Q9BZA0 68 aa1.61□□□□□ -2.15
VPS13A-212ENST00000493341 H3BUX3 64 aa1.61□□□□□ -2.15
VPS13A-212ENST00000493341 CCL3L1P16619 93 aa1.61□□□□□ -2.15
VPS13A-212ENST00000493341 SVBPQ8N300 66 aa1.61□□□□□ -2.15
VPS13A-212ENST00000493341 Q8N6K4 173 aa1.61□□□□□ -2.15
VPS13A-212ENST00000493341 WFDC9Q8NEX5 89 aa1.61□□□□□ -2.15
VPS13A-212ENST00000493341 PIN1P1O15428 100 aa1.6□□□□□ -2.15
VPS13A-212ENST00000493341 UBE2D1P51668 147 aa1.6□□□□□ -2.15
VPS13A-212ENST00000493341 C8orf59Q8N0T1 100 aaPredicted RBP1.6□□□□□ -2.15
VPS13A-212ENST00000493341 PPP1R1CQ8WVI7 109 aa1.6□□□□□ -2.15
VPS13A-212ENST00000493341 BET1LQ9NYM9 111 aa1.6□□□□□ -2.15
VPS13A-212ENST00000493341 SCP2D1Q9UJQ7 156 aa1.6□□□□□ -2.15
VPS13A-212ENST00000493341 PRKDCP78527 4128 aaKnown RBP1.6□□□□□ -2.15
VPS13A-212ENST00000493341 TRAV13-2A0A0B4J235 113 aa1.59□□□□□ -2.15
VPS13A-212ENST00000493341 EDDM3BP56851 147 aa1.59□□□□□ -2.15
VPS13A-212ENST00000493341 HMGN3Q15651 99 aa1.59□□□□□ -2.15
VPS13A-212ENST00000493341 MYOZ3Q8TDC0 251 aa1.59□□□□□ -2.15
VPS13A-212ENST00000493341 MGAM2Q2M2H8 2515 aa1.59□□□□□ -2.15
VPS13A-212ENST00000493341 WNK1Q9H4A3 2382 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 TRAV30A0A087WSZ9 112 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 TRAV1-2A0A0B4J238 106 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 TMEM218A2RU14 115 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 TMEM14DPA8MWL7 114 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 HCG22E2RYF7 251 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 PRB3Q04118 309 aaPredicted RBP1.59□□□□□ -2.16
VPS13A-212ENST00000493341 KLKP1Q107X0 134 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 PIGYQ3MUY2 71 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 COX7B2Q8TF08 81 aa1.59□□□□□ -2.16
VPS13A-212ENST00000493341 DNAH7Q8WXX0 4024 aa1.58□□□□□ -2.16
VPS13A-212ENST00000493341 H3BSH0 61 aa1.58□□□□□ -2.16
VPS13A-212ENST00000493341 NDUFA3O95167 84 aa1.58□□□□□ -2.16
VPS13A-212ENST00000493341 S100A10P60903 97 aa1.58□□□□□ -2.16
VPS13A-212ENST00000493341 S100A13Q99584 98 aa1.58□□□□□ -2.16
VPS13A-212ENST00000493341 SPANXDQ9BXN6 97 aa1.58□□□□□ -2.16
VPS13A-212ENST00000493341 HILPDAQ9Y5L2 63 aa1.58□□□□□ -2.16
VPS13A-212ENST00000493341 IFITM1P13164 125 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 SSBP1Q04837 148 aaKnown RBP1.57□□□□□ -2.16
VPS13A-212ENST00000493341 KLK9Q2XQG4 91 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 COL7A1Q02388 2944 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 NOTCH1P46531 2555 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 H3BUA1 57 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 PDCD5O14737 125 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 COL5A1-AS1Q5SY13 56 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 FAM74A4Q5TZK3 123 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 LEAP2Q969E1 77 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 TMEM14BQ9NUH8 114 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 ABRACLQ9P1F3 81 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 TGP01266 2768 aa1.57□□□□□ -2.16
VPS13A-212ENST00000493341 DNAH9Q9NYC9 4486 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 K7EIL1 84 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 SAA2P0DJI9 122 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-212ENST00000493341 ELOF1P60002 83 aaKnown RBP1.56□□□□□ -2.16
VPS13A-212ENST00000493341 C10orf99Q6UWK7 81 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 ZNF818PQ6ZRF7 136 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 C6orf201Q7Z4U5 140 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 RBAKDNA6NC62 111 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 FAM24AA6NFZ4 105 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 ARL14EPLP0DKL9 152 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 PLAC4Q8WY50 150 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 ARHGAP5-AS1Q96IT6 56 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 AQP10Q96PS8 301 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 Q9H521 79 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 TNCP24821 2201 aa1.56□□□□□ -2.16
VPS13A-212ENST00000493341 TRBV7-1A0A0A6YYK4 115 aa1.55□□□□□ -2.16
VPS13A-212ENST00000493341 SIX6O95475 246 aa1.55□□□□□ -2.16
VPS13A-212ENST00000493341 KRTAP10-4P60372 401 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-212ENST00000493341 HSD52Q0P140 79 aa1.55□□□□□ -2.16
VPS13A-212ENST00000493341 RPL39P5Q59GN2 51 aa1.55□□□□□ -2.16
VPS13A-212ENST00000493341 LYSTQ99698 3801 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 DYNC2H1Q8NCM8 4307 aaKnown RBP1.54□□□□□ -2.16
VPS13A-212ENST00000493341 FAM223BA6NKX1 122 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 LY6G6CO95867 125 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 APOC3P02656 99 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 SPINK8P0C7L1 97 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 TRAPPC2P0DI81 140 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 TRAPPC2BP0DI82 140 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 C5orf38Q86SI9 138 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 FAM223AQ8IWN6 122 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 TTC9CQ8N5M4 171 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 USMG5Q96IX5 58 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 A0A087WXM4 84 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 G3V318 75 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms