RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 CNOT1A5YKK6 2376 aaKnown RBP0.06□□□□□ -2.4
XRN1-213ENST00000489241 FLNCQ14315 2725 aa0.06□□□□□ -2.4
XRN1-213ENST00000489241 NCOA2Q15596 1464 aa0.06□□□□□ -2.4
XRN1-213ENST00000489241 KNL1Q8NG31 2342 aa0.06□□□□□ -2.4
XRN1-213ENST00000489241 HMCN2Q8NDA2 5059 aa0.06□□□□□ -2.4
XRN1-213ENST00000489241 H3BUT2 72 aa0.06□□□□□ -2.4
XRN1-213ENST00000489241 DOT1LQ8TEK3 1739 aa0.06□□□□□ -2.4
XRN1-213ENST00000489241 URB2Q14146 1524 aaKnown RBP0.06□□□□□ -2.4
XRN1-213ENST00000489241 EP300Q09472 2414 aaPredicted RBP0.06□□□□□ -2.4
XRN1-213ENST00000489241 TNXBP22105 4242 aa0.05□□□□□ -2.4
XRN1-213ENST00000489241 A0A087WXM4 84 aa0.05□□□□□ -2.4
XRN1-213ENST00000489241 NDUFA3O95167 84 aa0.05□□□□□ -2.4
XRN1-213ENST00000489241 DEFB135Q30KP9 77 aa0.05□□□□□ -2.4
XRN1-213ENST00000489241 ZNF831Q5JPB2 1677 aa0.05□□□□□ -2.4
XRN1-213ENST00000489241 UMAD1C9J7I0 102 aa0.04□□□□□ -2.4
XRN1-213ENST00000489241 IFI27P40305 119 aaPredicted RBP0.04□□□□□ -2.4
XRN1-213ENST00000489241 TNRC6CQ9HCJ0 1690 aaKnown RBP0.04□□□□□ -2.4
XRN1-213ENST00000489241 ARFGEF2Q9Y6D5 1785 aa0.04□□□□□ -2.4
XRN1-213ENST00000489241 KMT2AQ03164 3969 aa0.03□□□□□ -2.4
XRN1-213ENST00000489241 PIK3C2BO00750 1634 aa0.03□□□□□ -2.4
XRN1-213ENST00000489241 USP32Q8NFA0 1604 aa0.03□□□□□ -2.4
XRN1-213ENST00000489241 IFI6P09912 130 aa0.03□□□□□ -2.4
XRN1-213ENST00000489241 COX6B2Q6YFQ2 88 aa0.03□□□□□ -2.4
XRN1-213ENST00000489241 LPAP08519 4548 aa0.03□□□□□ -2.4
XRN1-213ENST00000489241 ERVK-7P63135 1459 aa0.03□□□□□ -2.41
XRN1-213ENST00000489241 DIP2BQ9P265 1576 aa0.02□□□□□ -2.41
XRN1-213ENST00000489241 C4AP0C0L4 1744 aa0.02□□□□□ -2.41
XRN1-213ENST00000489241 C4BP0C0L5 1744 aa0.02□□□□□ -2.41
XRN1-213ENST00000489241 BVES-AS1Q5T3Y7 98 aa0.02□□□□□ -2.41
XRN1-213ENST00000489241 SETXQ7Z333 2677 aaKnown RBP0.02□□□□□ -2.41
XRN1-213ENST00000489241 HSPG2P98160 4391 aa0.02□□□□□ -2.41
XRN1-213ENST00000489241 DCAF1Q9Y4B6 1507 aa0.02□□□□□ -2.41
XRN1-213ENST00000489241 SMIM13P0DJ93 91 aa0.01□□□□□ -2.41
XRN1-213ENST00000489241 ATP5EP2Q5VTU8 51 aa0.01□□□□□ -2.41
XRN1-213ENST00000489241 FLNAP21333 2647 aaKnown RBP0.01□□□□□ -2.41
XRN1-213ENST00000489241 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.01□□□□□ -2.41
XRN1-213ENST00000489241 NWD1Q149M9 1564 aa0.01□□□□□ -2.41
XRN1-213ENST00000489241 FLNBO75369 2602 aaKnown RBP0□□□□□ -2.41
XRN1-213ENST00000489241 DEFB121Q5J5C9 76 aa0□□□□□ -2.41
XRN1-213ENST00000489241 PDE4DIPQ5VU43 2346 aa0□□□□□ -2.41
XRN1-213ENST00000489241 ARHGAP35Q9NRY4 1499 aa0□□□□□ -2.41
XRN1-213ENST00000489241 CEP170BQ9Y4F5 1589 aaPredicted RBP0□□□□□ -2.41
XRN1-213ENST00000489241 REV3LO60673 3130 aa-0□□□□□ -2.41
XRN1-213ENST00000489241 NESP48681 1621 aa-0.01□□□□□ -2.41
XRN1-213ENST00000489241 ALMS1Q8TCU4 4167 aa-0.01□□□□□ -2.41
XRN1-213ENST00000489241 FSIP2Q5CZC0 6907 aa-0.01□□□□□ -2.41
XRN1-213ENST00000489241 NREPQ16612 68 aa-0.01□□□□□ -2.41
XRN1-213ENST00000489241 ACANP16112 2415 aa-0.02□□□□□ -2.41
XRN1-213ENST00000489241 NSD1Q96L73 2696 aaPredicted RBP-0.02□□□□□ -2.41
XRN1-213ENST00000489241 C3orf79P0CE67 100 aa-0.02□□□□□ -2.41
XRN1-213ENST00000489241 PRO3102Q9H379 93 aa-0.02□□□□□ -2.41
XRN1-213ENST00000489241 MAGI3Q5TCQ9 1506 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 SCN11AQ9UI33 1791 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 DDX60LQ5H9U9 1706 aaKnown RBP-0.03□□□□□ -2.41
XRN1-213ENST00000489241 H0YGG7 62 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 NDUFA4O00483 81 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 SPRR2BP35325 72 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 LINC00158P58513 81 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 DEFA5Q01523 94 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 ZANQ9Y493 2812 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 ABCC1P33527 1531 aa-0.03□□□□□ -2.41
XRN1-213ENST00000489241 PRKDCP78527 4128 aaKnown RBP-0.03□□□□□ -2.41
XRN1-213ENST00000489241 PLCH1Q4KWH8 1693 aa-0.04□□□□□ -2.42
XRN1-213ENST00000489241 CICQ96RK0 1608 aaPredicted RBP-0.04□□□□□ -2.42
XRN1-213ENST00000489241 C18orf32Q8TCD1 76 aa-0.04□□□□□ -2.42
XRN1-213ENST00000489241 KDM5DQ9BY66 1539 aa-0.04□□□□□ -2.42
XRN1-213ENST00000489241 PCNX1Q96RV3 2341 aa-0.04□□□□□ -2.42
XRN1-213ENST00000489241 CFAP43Q8NDM7 1665 aa-0.05□□□□□ -2.42
XRN1-213ENST00000489241 HECTD4Q9Y4D8 3996 aa-0.05□□□□□ -2.42
XRN1-213ENST00000489241 SSPOA2VEC9 5147 aa-0.05□□□□□ -2.42
XRN1-213ENST00000489241 RICTORQ6R327 1708 aa-0.06□□□□□ -2.42
XRN1-213ENST00000489241 NBASA2RRP1 2371 aa-0.06□□□□□ -2.42
XRN1-213ENST00000489241 CFAP74Q9C0B2 1584 aa-0.07□□□□□ -2.42
XRN1-213ENST00000489241 LRP2P98164 4655 aa-0.07□□□□□ -2.42
XRN1-213ENST00000489241 TRANK1O15050 2925 aa-0.07□□□□□ -2.42
XRN1-213ENST00000489241 CCDC88BA6NC98 1476 aa-0.08□□□□□ -2.42
XRN1-213ENST00000489241 TENM2Q9NT68 2774 aa-0.08□□□□□ -2.42
XRN1-213ENST00000489241 STAB1Q9NY15 2570 aa-0.08□□□□□ -2.42
XRN1-213ENST00000489241 LCE6AA0A183 80 aa-0.08□□□□□ -2.42
XRN1-213ENST00000489241 H3BVH4 76 aa-0.08□□□□□ -2.42
XRN1-213ENST00000489241 RRBP1Q9P2E9 1410 aaKnown RBP-0.08□□□□□ -2.42
XRN1-213ENST00000489241 ANKARQ7Z5J8 1434 aa-0.09□□□□□ -2.42
XRN1-213ENST00000489241 COL6A3P12111 3177 aa-0.09□□□□□ -2.42
XRN1-213ENST00000489241 HMGA1P17096 107 aaKnown RBP-0.1□□□□□ -2.43
XRN1-213ENST00000489241 PTPN23Q9H3S7 1636 aa-0.1□□□□□ -2.43
XRN1-213ENST00000489241 ADAMTS12P58397 1594 aa-0.11□□□□□ -2.43
XRN1-213ENST00000489241 SCRIBQ14160 1630 aa-0.11□□□□□ -2.43
XRN1-213ENST00000489241 TJP1Q07157 1748 aa-0.11□□□□□ -2.43
XRN1-213ENST00000489241 LRP1BQ9NZR2 4599 aa-0.12□□□□□ -2.43
XRN1-213ENST00000489241 MAP3K1Q13233 1512 aa-0.13□□□□□ -2.43
XRN1-213ENST00000489241 WIZO95785 1651 aa-0.13□□□□□ -2.43
XRN1-213ENST00000489241 PLXNC1O60486 1568 aa-0.13□□□□□ -2.43
XRN1-213ENST00000489241 H0YAA0 97 aa-0.13□□□□□ -2.43
XRN1-213ENST00000489241 MAP1AP78559 2803 aaPredicted RBP-0.13□□□□□ -2.43
XRN1-213ENST00000489241 ITSN1Q15811 1721 aa-0.13□□□□□ -2.43
XRN1-213ENST00000489241 ANKRD50Q9ULJ7 1429 aa-0.13□□□□□ -2.43
XRN1-213ENST00000489241 AKAP13Q12802 2813 aa-0.14□□□□□ -2.43
XRN1-213ENST00000489241 ABCA8O94911 1581 aa-0.14□□□□□ -2.43
XRN1-213ENST00000489241 MRPL33O75394 65 aaKnown RBP-0.14□□□□□ -2.43
XRN1-213ENST00000489241 UBL5Q9BZL1 73 aa-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms