RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 COL6A5A8TX70 2615 aa7.44□□□□□ -1.22
HDAC6-228ENST00000486227 C16orf90A8MZG2 172 aa7.44□□□□□ -1.22
HDAC6-228ENST00000486227 PSPHP1O15172 72 aa7.44□□□□□ -1.22
HDAC6-228ENST00000486227 TM2D3Q9BRN9 247 aa7.43□□□□□ -1.22
HDAC6-228ENST00000486227 KALRNO60229 2985 aa7.43□□□□□ -1.22
HDAC6-228ENST00000486227 PRLHP81277 87 aa7.43□□□□□ -1.22
HDAC6-228ENST00000486227 KLKP1Q107X0 134 aa7.43□□□□□ -1.22
HDAC6-228ENST00000486227 LINC00208Q96KT6 92 aa7.43□□□□□ -1.22
HDAC6-228ENST00000486227 ZZEF1O43149 2961 aa7.42□□□□□ -1.22
HDAC6-228ENST00000486227 FAM229AH3BQW9 127 aa7.42□□□□□ -1.22
HDAC6-228ENST00000486227 SEC61GP60059 68 aa7.42□□□□□ -1.22
HDAC6-228ENST00000486227 Q9BRP9 147 aa7.42□□□□□ -1.22
HDAC6-228ENST00000486227 DMXL1Q9Y485 3027 aa7.42□□□□□ -1.22
HDAC6-228ENST00000486227 TACC2O95359 2948 aa7.42□□□□□ -1.22
HDAC6-228ENST00000486227 UBR5O95071 2799 aaPredicted RBP7.41□□□□□ -1.22
HDAC6-228ENST00000486227 CR1P17927 2039 aa7.41□□□□□ -1.22
HDAC6-228ENST00000486227 LINC00612Q8N6U2 182 aa7.41□□□□□ -1.22
HDAC6-228ENST00000486227 LINC00167Q96N53 147 aa7.41□□□□□ -1.22
HDAC6-228ENST00000486227 BAHCC1Q9P281 2608 aa7.41□□□□□ -1.22
HDAC6-228ENST00000486227 NOTCH1P46531 2555 aa7.4□□□□□ -1.22
HDAC6-228ENST00000486227 GCN1Q92616 2671 aaKnown RBP7.4□□□□□ -1.22
HDAC6-228ENST00000486227 RTL8CO15255 209 aa7.4□□□□□ -1.22
HDAC6-228ENST00000486227 WIPF1O43516 503 aa7.4□□□□□ -1.22
HDAC6-228ENST00000486227 PRR15LQ9BU68 103 aa7.4□□□□□ -1.22
HDAC6-228ENST00000486227 ERC2-IT1O76042 136 aa7.4□□□□□ -1.23
HDAC6-228ENST00000486227 H7BZZ5 65 aa7.39□□□□□ -1.23
HDAC6-228ENST00000486227 SMIM29Q86T20 159 aa7.39□□□□□ -1.23
HDAC6-228ENST00000486227 DNAH10OSP0CZ25 163 aa7.39□□□□□ -1.23
HDAC6-228ENST00000486227 A0A1B0GW54 56 aa7.38□□□□□ -1.23
HDAC6-228ENST00000486227 LINC00336Q6ZUF6 198 aa7.38□□□□□ -1.23
HDAC6-228ENST00000486227 LRBAP50851 2863 aa7.38□□□□□ -1.23
HDAC6-228ENST00000486227 ELOF1P60002 83 aaKnown RBP7.38□□□□□ -1.23
HDAC6-228ENST00000486227 C9orf129Q5T035 196 aaKnown RBP7.37□□□□□ -1.23
HDAC6-228ENST00000486227 HCG22E2RYF7 251 aa7.37□□□□□ -1.23
HDAC6-228ENST00000486227 A0A087WSZ3 146 aa7.37□□□□□ -1.23
HDAC6-228ENST00000486227 hDV103S1A0JD37 113 aa7.36□□□□□ -1.23
HDAC6-228ENST00000486227 KIAA0087Q14695 138 aa7.36□□□□□ -1.23
HDAC6-228ENST00000486227 OBSCN-AS1Q96MR7 158 aa7.36□□□□□ -1.23
HDAC6-228ENST00000486227 GVQW2A0A096LPI5 108 aaPredicted RBP7.36□□□□□ -1.23
HDAC6-228ENST00000486227 Q6ZRP5 223 aa7.35□□□□□ -1.23
HDAC6-228ENST00000486227 LIMD2Q9BT23 127 aa7.35□□□□□ -1.23
HDAC6-228ENST00000486227 PRR34Q9NV39 138 aa7.35□□□□□ -1.23
HDAC6-228ENST00000486227 CFAP47Q6ZTR5 3102 aa7.34□□□□□ -1.23
HDAC6-228ENST00000486227 ITPR1Q14643 2758 aa7.34□□□□□ -1.23
HDAC6-228ENST00000486227 DEFB116Q30KQ4 102 aa7.34□□□□□ -1.23
HDAC6-228ENST00000486227 IGLV6-57P01721 117 aa7.34□□□□□ -1.23
HDAC6-228ENST00000486227 NBEAL2Q6ZNJ1 2754 aa7.33□□□□□ -1.24
HDAC6-228ENST00000486227 H0Y9P7 68 aa7.33□□□□□ -1.24
HDAC6-228ENST00000486227 LOC400499M0QZD8 3231 aa7.33□□□□□ -1.24
HDAC6-228ENST00000486227 VPREB1P12018 145 aa7.32□□□□□ -1.24
HDAC6-228ENST00000486227 FAM104AQ969W3 186 aa7.32□□□□□ -1.24
HDAC6-228ENST00000486227 IGHV6-1A0A0B4J1U7 121 aa7.31□□□□□ -1.24
HDAC6-228ENST00000486227 CHTF8P0CG12 524 aa7.31□□□□□ -1.24
HDAC6-228ENST00000486227 PHF5AQ7RTV0 110 aaKnown RBP7.31□□□□□ -1.24
HDAC6-228ENST00000486227 Q8NBF4 154 aa7.29□□□□□ -1.24
HDAC6-228ENST00000486227 MYO15AQ9UKN7 3530 aa7.29□□□□□ -1.24
HDAC6-228ENST00000486227 FAM168BA1KXE4 195 aa7.29□□□□□ -1.24
HDAC6-228ENST00000486227 Q6ZRX8 168 aa7.29□□□□□ -1.24
HDAC6-228ENST00000486227 PLA2G1BP04054 148 aaKnown RBP7.29□□□□□ -1.24
HDAC6-228ENST00000486227 ITPR2Q14571 2701 aa7.29□□□□□ -1.24
HDAC6-228ENST00000486227 C15orf56Q8N910 161 aa7.28□□□□□ -1.24
HDAC6-228ENST00000486227 TRBV7-4A0A0J9YYF1 115 aa7.28□□□□□ -1.24
HDAC6-228ENST00000486227 SERTAD4-AS1Q5TG53 156 aa7.28□□□□□ -1.24
HDAC6-228ENST00000486227 ST20-AS1Q8NBB2 130 aa7.27□□□□□ -1.24
HDAC6-228ENST00000486227 MOBPQ13875 183 aa7.26□□□□□ -1.25
HDAC6-228ENST00000486227 C1orf64Q8NEQ6 169 aa7.26□□□□□ -1.25
HDAC6-228ENST00000486227 SPACA4Q8TDM5 124 aa7.26□□□□□ -1.25
HDAC6-228ENST00000486227 UTP20O75691 2785 aaKnown RBP7.25□□□□□ -1.25
HDAC6-228ENST00000486227 USP34Q70CQ2 3546 aa7.25□□□□□ -1.25
HDAC6-228ENST00000486227 H3BPC8 53 aa7.25□□□□□ -1.25
HDAC6-228ENST00000486227 J3QL48 77 aa7.24□□□□□ -1.25
HDAC6-228ENST00000486227 PCOTHQ58A44 107 aa7.24□□□□□ -1.25
HDAC6-228ENST00000486227 Q5XG85 94 aa7.24□□□□□ -1.25
HDAC6-228ENST00000486227 CYSTM1Q9H1C7 97 aa7.24□□□□□ -1.25
HDAC6-228ENST00000486227 EPM2AB3EWF7 344 aa7.23□□□□□ -1.25
HDAC6-228ENST00000486227 TYMSOSQ8TAI1 123 aa7.23□□□□□ -1.25
HDAC6-228ENST00000486227 RPL37AP61513 92 aaKnown RBP7.23□□□□□ -1.25
HDAC6-228ENST00000486227 LINC00528Q8N1L1 170 aa7.23□□□□□ -1.25
HDAC6-228ENST00000486227 A0A087WTM6 91 aa7.22□□□□□ -1.25
HDAC6-228ENST00000486227 LINC00476Q8WZB0 136 aa7.22□□□□□ -1.25
HDAC6-228ENST00000486227 APLNQ9ULZ1 77 aa7.22□□□□□ -1.25
HDAC6-228ENST00000486227 CASC10Q5T4H9 136 aa7.22□□□□□ -1.25
HDAC6-228ENST00000486227 ZANQ9Y493 2812 aa7.21□□□□□ -1.26
HDAC6-228ENST00000486227 KCNQ1DNQ9H478 68 aa7.2□□□□□ -1.26
HDAC6-228ENST00000486227 NBEAL1Q6ZS30 2694 aa7.2□□□□□ -1.26
HDAC6-228ENST00000486227 IGLV1-50A0A075B6I6 118 aa7.2□□□□□ -1.26
HDAC6-228ENST00000486227 A8MUN3 132 aa7.19□□□□□ -1.26
HDAC6-228ENST00000486227 RETNLBQ9BQ08 111 aa7.19□□□□□ -1.26
HDAC6-228ENST00000486227 NSD1Q96L73 2696 aaPredicted RBP7.17□□□□□ -1.26
HDAC6-228ENST00000486227 K7EQZ3 153 aa7.17□□□□□ -1.26
HDAC6-228ENST00000486227 C9orf163Q8N9P6 203 aa7.17□□□□□ -1.26
HDAC6-228ENST00000486227 TP53AIP1Q9HCN2 124 aa7.16□□□□□ -1.26
HDAC6-228ENST00000486227 CYP4F30PQ9H0H9 118 aa7.16□□□□□ -1.26
HDAC6-228ENST00000486227 APCP25054 2843 aa7.15□□□□□ -1.26
HDAC6-228ENST00000486227 K7ERS5 55 aa7.15□□□□□ -1.26
HDAC6-228ENST00000486227 TRAV22A0A0B4J277 110 aa7.15□□□□□ -1.27
HDAC6-228ENST00000486227 OXTP01178 125 aa7.13□□□□□ -1.27
HDAC6-228ENST00000486227 TLX1NBP0CAT3 122 aa7.13□□□□□ -1.27
HDAC6-228ENST00000486227 OCR1Q9BZK8 76 aa7.13□□□□□ -1.27
HDAC6-228ENST00000486227 SMR3BP02814 79 aaPredicted RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms