RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 LINC00167Q96N53 147 aa10.17□□□□□ -0.78
TRIM54-203ENST00000485306 CBY1Q9Y3M2 126 aa10.17□□□□□ -0.78
TRIM54-203ENST00000485306 UBE2BP63146 152 aa10.16□□□□□ -0.78
TRIM54-203ENST00000485306 KRTAP11-1Q8IUC1 163 aa10.16□□□□□ -0.78
TRIM54-203ENST00000485306 IGKV2-28A0A075B6P5 120 aa10.15□□□□□ -0.78
TRIM54-203ENST00000485306 TRAV13-2A0A0B4J235 113 aa10.15□□□□□ -0.78
TRIM54-203ENST00000485306 IGKV2D-28P01615 120 aa10.15□□□□□ -0.78
TRIM54-203ENST00000485306 IGLV7-43P04211 117 aa10.15□□□□□ -0.78
TRIM54-203ENST00000485306 KRTAP10-8P60410 259 aa10.15□□□□□ -0.78
TRIM54-203ENST00000485306 IGLV1-50A0A075B6I6 118 aa10.14□□□□□ -0.79
TRIM54-203ENST00000485306 M0R143 59 aa10.14□□□□□ -0.79
TRIM54-203ENST00000485306 DDTP30046 118 aa10.14□□□□□ -0.79
TRIM54-203ENST00000485306 S100A7L2Q5SY68 101 aa10.14□□□□□ -0.79
TRIM54-203ENST00000485306 DIRC1Q969H9 104 aa10.14□□□□□ -0.79
TRIM54-203ENST00000485306 TMEM126AQ9H061 195 aa10.14□□□□□ -0.79
TRIM54-203ENST00000485306 GAGE10A6NGK3 116 aa10.13□□□□□ -0.79
TRIM54-203ENST00000485306 IGLV6-57P01721 117 aa10.13□□□□□ -0.79
TRIM54-203ENST00000485306 CTAG1AP78358 180 aa10.13□□□□□ -0.79
TRIM54-203ENST00000485306 HMCN2Q8NDA2 5059 aa10.12□□□□□ -0.79
TRIM54-203ENST00000485306 A0A0B4J2C4 111 aa10.12□□□□□ -0.79
TRIM54-203ENST00000485306 TRBV10-3A0A0K0K1G6 114 aa10.12□□□□□ -0.79
TRIM54-203ENST00000485306 LORP23490 312 aaPredicted RBP10.12□□□□□ -0.79
TRIM54-203ENST00000485306 FXYD2P54710 66 aa10.12□□□□□ -0.79
TRIM54-203ENST00000485306 OR13C6PQ8NH95 151 aa10.12□□□□□ -0.79
TRIM54-203ENST00000485306 LINC00337Q8N6G1 96 aa10.11□□□□□ -0.79
TRIM54-203ENST00000485306 KCNQ1DNQ9H478 68 aa10.11□□□□□ -0.79
TRIM54-203ENST00000485306 A6NDN8 102 aa10.1□□□□□ -0.79
TRIM54-203ENST00000485306 RPL37AP8A6NKH3 93 aa10.1□□□□□ -0.79
TRIM54-203ENST00000485306 PRYO14603 147 aa10.1□□□□□ -0.79
TRIM54-203ENST00000485306 BVES-AS1Q5T3Y7 98 aa10.1□□□□□ -0.79
TRIM54-203ENST00000485306 CFC1BP0CG36 223 aa10.09□□□□□ -0.79
TRIM54-203ENST00000485306 CFC1P0CG37 223 aa10.09□□□□□ -0.79
TRIM54-203ENST00000485306 RAB37Q96AX2 223 aa10.09□□□□□ -0.79
TRIM54-203ENST00000485306 TNXBP22105 4242 aa10.09□□□□□ -0.79
TRIM54-203ENST00000485306 TRAV23DV6A0A075B6W5 121 aa10.07□□□□□ -0.8
TRIM54-203ENST00000485306 A0A1B0GWB2 263 aa10.07□□□□□ -0.8
TRIM54-203ENST00000485306 H0Y9J4 135 aa10.07□□□□□ -0.8
TRIM54-203ENST00000485306 HINT1P49773 126 aaPredicted RBP10.06□□□□□ -0.8
TRIM54-203ENST00000485306 NHP2Q9NX24 153 aaKnown RBP10.06□□□□□ -0.8
TRIM54-203ENST00000485306 SPRR1AP35321 89 aa10.05□□□□□ -0.8
TRIM54-203ENST00000485306 PRO1854Q9UHT4 67 aa10.05□□□□□ -0.8
TRIM54-203ENST00000485306 BCE1O60756 84 aa10.04□□□□□ -0.8
TRIM54-203ENST00000485306 RPL13AP40429 203 aaKnown RBP10.04□□□□□ -0.8
TRIM54-203ENST00000485306 ZNF73O43830 326 aaPredicted RBP10.03□□□□□ -0.8
TRIM54-203ENST00000485306 ZNF861PO60384 105 aa10.01□□□□□ -0.81
TRIM54-203ENST00000485306 TRBV7-6A0A0J9YX20 115 aa10□□□□□ -0.81
TRIM54-203ENST00000485306 ETDCA0A1B0GVM5 59 aa10□□□□□ -0.81
TRIM54-203ENST00000485306 KRTAP4-16G5E9R7 235 aaPredicted RBP10□□□□□ -0.81
TRIM54-203ENST00000485306 RPL28P46779 137 aaKnown RBP10□□□□□ -0.81
TRIM54-203ENST00000485306 PRR26Q8N8Z3 221 aa10□□□□□ -0.81
TRIM54-203ENST00000485306 SMIM11BQ8TCY0 68 aa10□□□□□ -0.81
TRIM54-203ENST00000485306 VAMP3Q15836 100 aa9.98□□□□□ -0.81
TRIM54-203ENST00000485306 C6orf99Q4VX62 202 aa9.98□□□□□ -0.81
TRIM54-203ENST00000485306 FAM19A1Q7Z5A9 133 aa9.98□□□□□ -0.81
TRIM54-203ENST00000485306 UBR4Q5T4S7 5183 aa9.98□□□□□ -0.81
TRIM54-203ENST00000485306 PCP4L1A6NKN8 68 aa9.97□□□□□ -0.81
TRIM54-203ENST00000485306 K7ERJ3 54 aa9.97□□□□□ -0.81
TRIM54-203ENST00000485306 UBE2AP49459 152 aa9.97□□□□□ -0.81
TRIM54-203ENST00000485306 Q1RN00 199 aa9.97□□□□□ -0.81
TRIM54-203ENST00000485306 B5MCH6 92 aa9.96□□□□□ -0.82
TRIM54-203ENST00000485306 H7C2G1 150 aa9.96□□□□□ -0.82
TRIM54-203ENST00000485306 BATFQ16520 125 aa9.96□□□□□ -0.82
TRIM54-203ENST00000485306 KRTAP1-4P0C5Y4 121 aa9.95□□□□□ -0.82
TRIM54-203ENST00000485306 COX7BP24311 80 aa9.95□□□□□ -0.82
TRIM54-203ENST00000485306 ELOF1P60002 83 aaKnown RBP9.95□□□□□ -0.82
TRIM54-203ENST00000485306 Q6ZRX8 168 aa9.95□□□□□ -0.82
TRIM54-203ENST00000485306 KRTAP13-1Q8IUC0 172 aa9.95□□□□□ -0.82
TRIM54-203ENST00000485306 SNHG12Q9BXW3 62 aa9.93□□□□□ -0.82
TRIM54-203ENST00000485306 H0YGX0 51 aa9.92□□□□□ -0.82
TRIM54-203ENST00000485306 TSPAN13O95857 204 aa9.92□□□□□ -0.82
TRIM54-203ENST00000485306 COX6CP09669 75 aa9.92□□□□□ -0.82
TRIM54-203ENST00000485306 PRLHP81277 87 aa9.92□□□□□ -0.82
TRIM54-203ENST00000485306 DHRS4-AS1Q9P1J3 65 aa9.91□□□□□ -0.82
TRIM54-203ENST00000485306 GHRHP01286 108 aa9.9□□□□□ -0.82
TRIM54-203ENST00000485306 PSMB2P49721 201 aa9.9□□□□□ -0.82
TRIM54-203ENST00000485306 HIGD2AQ9BW72 106 aa9.89□□□□□ -0.83
TRIM54-203ENST00000485306 TRIAP1O43715 76 aa9.88□□□□□ -0.83
TRIM54-203ENST00000485306 SLC25A20O43772 301 aa9.88□□□□□ -0.83
TRIM54-203ENST00000485306 COL5A1-AS1Q5SY13 56 aa9.88□□□□□ -0.83
TRIM54-203ENST00000485306 SMCR5Q8TEV8 140 aa9.88□□□□□ -0.83
TRIM54-203ENST00000485306 SNCGO76070 127 aa9.87□□□□□ -0.83
TRIM54-203ENST00000485306 Q9BRP9 147 aa9.87□□□□□ -0.83
TRIM54-203ENST00000485306 LINC00575Q6W349 94 aa9.86□□□□□ -0.83
TRIM54-203ENST00000485306 LRP2P98164 4655 aa9.85□□□□□ -0.83
TRIM54-203ENST00000485306 A0A1B0GX51 115 aa9.85□□□□□ -0.83
TRIM54-203ENST00000485306 CRYGAP11844 174 aa9.85□□□□□ -0.83
TRIM54-203ENST00000485306 LYRM7Q5U5X0 104 aa9.85□□□□□ -0.83
TRIM54-203ENST00000485306 ZNF706Q9Y5V0 76 aaPredicted RBP9.85□□□□□ -0.83
TRIM54-203ENST00000485306 TAX1BP3O14907 124 aa9.84□□□□□ -0.83
TRIM54-203ENST00000485306 SCGB1C2P0DMR2 95 aa9.84□□□□□ -0.83
TRIM54-203ENST00000485306 hADV29S1A0JD25 119 aa9.83□□□□□ -0.84
TRIM54-203ENST00000485306 C9orf118A6NHY6 69 aa9.83□□□□□ -0.84
TRIM54-203ENST00000485306 TYMSOSQ8TAI1 123 aa9.81□□□□□ -0.84
TRIM54-203ENST00000485306 A0A087X002 238 aa9.8□□□□□ -0.84
TRIM54-203ENST00000485306 ERC2-IT1O76042 136 aa9.8□□□□□ -0.84
TRIM54-203ENST00000485306 H3BUT2 72 aa9.79□□□□□ -0.84
TRIM54-203ENST00000485306 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.79□□□□□ -0.84
TRIM54-203ENST00000485306 FAM229BQ4G0N7 80 aa9.78□□□□□ -0.84
TRIM54-203ENST00000485306 FAM218AQ96MZ4 157 aa9.78□□□□□ -0.84
TRIM54-203ENST00000485306 SPRR4Q96PI1 79 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms