RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PSPHP1O15172 72 aa12.38□□□□□ -0.43
CCDC88B-207ENST00000479965 KPRPQ5T749 579 aaPredicted RBP12.37□□□□□ -0.43
CCDC88B-207ENST00000479965 C1orf64Q8NEQ6 169 aa12.36□□□□□ -0.43
CCDC88B-207ENST00000479965 hDV103S1A0JD37 113 aa12.35□□□□□ -0.43
CCDC88B-207ENST00000479965 Q8N377 158 aa12.35□□□□□ -0.43
CCDC88B-207ENST00000479965 EGFEM1PQ0D2K5 195 aa12.33□□□□□ -0.44
CCDC88B-207ENST00000479965 KRTAP1-3Q8IUG1 177 aa12.33□□□□□ -0.44
CCDC88B-207ENST00000479965 Q6ZRP5 223 aa12.33□□□□□ -0.44
CCDC88B-207ENST00000479965 NKAPP1Q8N9T2 125 aa12.33□□□□□ -0.44
CCDC88B-207ENST00000479965 WFDC10BQ8IUB3 73 aa12.32□□□□□ -0.44
CCDC88B-207ENST00000479965 F8P00451 2351 aa12.32□□□□□ -0.44
CCDC88B-207ENST00000479965 SPART-AS1P0CW21 52 aa12.3□□□□□ -0.44
CCDC88B-207ENST00000479965 A0A1W2PNM2 257 aa12.29□□□□□ -0.44
CCDC88B-207ENST00000479965 RPL37AP8A6NKH3 93 aa12.29□□□□□ -0.44
CCDC88B-207ENST00000479965 C1orf137Q5JT78 98 aa12.28□□□□□ -0.44
CCDC88B-207ENST00000479965 K7EQZ3 153 aa12.27□□□□□ -0.45
CCDC88B-207ENST00000479965 Q8NAQ8 132 aa12.26□□□□□ -0.45
CCDC88B-207ENST00000479965 SERTAD4-AS1Q5TG53 156 aa12.26□□□□□ -0.45
CCDC88B-207ENST00000479965 ST20-AS1Q8NBB2 130 aa12.26□□□□□ -0.45
CCDC88B-207ENST00000479965 ETDCA0A1B0GVM5 59 aa12.25□□□□□ -0.45
CCDC88B-207ENST00000479965 APOC4P55056 127 aa12.25□□□□□ -0.45
CCDC88B-207ENST00000479965 C15orf56Q8N910 161 aa12.25□□□□□ -0.45
CCDC88B-207ENST00000479965 IGLV5-48A0A075B6I7 105 aa12.25□□□□□ -0.45
CCDC88B-207ENST00000479965 KRTAP10-3P60369 221 aa12.25□□□□□ -0.45
CCDC88B-207ENST00000479965 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.24□□□□□ -0.45
CCDC88B-207ENST00000479965 C7orf33Q8WU49 177 aa12.24□□□□□ -0.45
CCDC88B-207ENST00000479965 DEFB116Q30KQ4 102 aa12.24□□□□□ -0.45
CCDC88B-207ENST00000479965 IGKV2D-24A0A075B6R9 120 aa12.24□□□□□ -0.45
CCDC88B-207ENST00000479965 PMAIP1Q13794 54 aa12.22□□□□□ -0.45
CCDC88B-207ENST00000479965 TRAV22A0A0B4J277 110 aa12.22□□□□□ -0.45
CCDC88B-207ENST00000479965 DSCR10P59022 87 aa12.22□□□□□ -0.45
CCDC88B-207ENST00000479965 Q1T7F1 81 aa12.21□□□□□ -0.46
CCDC88B-207ENST00000479965 PRR15Q8IV56 129 aa12.21□□□□□ -0.46
CCDC88B-207ENST00000479965 A0A0G2JQZ4 141 aa12.2□□□□□ -0.46
CCDC88B-207ENST00000479965 A0A1W2PNN7 141 aa12.2□□□□□ -0.46
CCDC88B-207ENST00000479965 KCNQ1DNQ9H478 68 aa12.2□□□□□ -0.46
CCDC88B-207ENST00000479965 PKD1L1Q8TDX9 2849 aa12.2□□□□□ -0.46
CCDC88B-207ENST00000479965 HIVEP1P15822 2718 aa12.2□□□□□ -0.46
CCDC88B-207ENST00000479965 SYCNQ0VAF6 134 aa12.2□□□□□ -0.46
CCDC88B-207ENST00000479965 UBR5O95071 2799 aaPredicted RBP12.19□□□□□ -0.46
CCDC88B-207ENST00000479965 Q8NBF4 154 aa12.19□□□□□ -0.46
CCDC88B-207ENST00000479965 WFDC13Q8IUB5 93 aa12.18□□□□□ -0.46
CCDC88B-207ENST00000479965 Q9BRP9 147 aa12.18□□□□□ -0.46
CCDC88B-207ENST00000479965 A8MUN3 132 aa12.17□□□□□ -0.46
CCDC88B-207ENST00000479965 KRTAP26-1Q6PEX3 210 aa12.17□□□□□ -0.46
CCDC88B-207ENST00000479965 ZCCHC13Q8WW36 166 aaKnown RBP12.17□□□□□ -0.46
CCDC88B-207ENST00000479965 LCE6AA0A183 80 aa12.16□□□□□ -0.46
CCDC88B-207ENST00000479965 FAM168BA1KXE4 195 aa12.16□□□□□ -0.46
CCDC88B-207ENST00000479965 Q6ZRX8 168 aa12.16□□□□□ -0.46
CCDC88B-207ENST00000479965 DHRS4-AS1Q9P1J3 65 aa12.16□□□□□ -0.46
CCDC88B-207ENST00000479965 HCG22E2RYF7 251 aa12.15□□□□□ -0.47
CCDC88B-207ENST00000479965 UBE2BP63146 152 aa12.14□□□□□ -0.47
CCDC88B-207ENST00000479965 A8MU10 97 aa12.13□□□□□ -0.47
CCDC88B-207ENST00000479965 USP24Q9UPU5 2620 aa12.13□□□□□ -0.47
CCDC88B-207ENST00000479965 TEP1Q99973 2627 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-207ENST00000479965 PSCAO43653 123 aa12.12□□□□□ -0.47
CCDC88B-207ENST00000479965 KRTAP1-1Q07627 177 aa12.12□□□□□ -0.47
CCDC88B-207ENST00000479965 ANK3Q12955 4377 aaKnown RBP12.11□□□□□ -0.47
CCDC88B-207ENST00000479965 ITPR2Q14571 2701 aa12.11□□□□□ -0.47
CCDC88B-207ENST00000479965 LINC00208Q96KT6 92 aa12.11□□□□□ -0.47
CCDC88B-207ENST00000479965 NOTCH2Q04721 2471 aa12.1□□□□□ -0.47
CCDC88B-207ENST00000479965 TNP2Q05952 138 aa12.1□□□□□ -0.47
CCDC88B-207ENST00000479965 SMR3AQ99954 134 aa12.09□□□□□ -0.47
CCDC88B-207ENST00000479965 BAHCC1Q9P281 2608 aa12.09□□□□□ -0.47
CCDC88B-207ENST00000479965 TENM1Q9UKZ4 2725 aa12.09□□□□□ -0.47
CCDC88B-207ENST00000479965 MP68P56378 58 aa12.09□□□□□ -0.47
CCDC88B-207ENST00000479965 ATRQ13535 2644 aa12.08□□□□□ -0.48
CCDC88B-207ENST00000479965 A0A1B0GW54 56 aa12.08□□□□□ -0.48
CCDC88B-207ENST00000479965 SPRR4Q96PI1 79 aa12.08□□□□□ -0.48
CCDC88B-207ENST00000479965 RETNQ9HD89 108 aa12.07□□□□□ -0.48
CCDC88B-207ENST00000479965 CYP4F30PQ9H0H9 118 aa12.06□□□□□ -0.48
CCDC88B-207ENST00000479965 TRRAPQ9Y4A5 3859 aa12.06□□□□□ -0.48
CCDC88B-207ENST00000479965 NDUFB1O75438 58 aa12.05□□□□□ -0.48
CCDC88B-207ENST00000479965 RPL37AP61513 92 aaKnown RBP12.05□□□□□ -0.48
CCDC88B-207ENST00000479965 LINC00476Q8WZB0 136 aa12.05□□□□□ -0.48
CCDC88B-207ENST00000479965 IGLV1-50A0A075B6I6 118 aa12.04□□□□□ -0.48
CCDC88B-207ENST00000479965 B9D2Q9BPU9 175 aa12.04□□□□□ -0.48
CCDC88B-207ENST00000479965 PDZD2O15018 2839 aa12.03□□□□□ -0.48
CCDC88B-207ENST00000479965 CHKB-CPT1BH3BT56 60 aa12.03□□□□□ -0.48
CCDC88B-207ENST00000479965 A0A087WSZ3 146 aa12.02□□□□□ -0.49
CCDC88B-207ENST00000479965 KRTAP4-16G5E9R7 235 aaPredicted RBP12.02□□□□□ -0.49
CCDC88B-207ENST00000479965 SPTSSBQ8NFR3 76 aa12□□□□□ -0.49
CCDC88B-207ENST00000479965 Q5VV11 94 aa12□□□□□ -0.49
CCDC88B-207ENST00000479965 PRR15LQ9BU68 103 aa11.97□□□□□ -0.49
CCDC88B-207ENST00000479965 IGFL1Q6UW32 110 aa11.97□□□□□ -0.49
CCDC88B-207ENST00000479965 MRPL55Q7Z7F7 128 aaKnown RBP11.97□□□□□ -0.49
CCDC88B-207ENST00000479965 H0Y9P7 68 aa11.96□□□□□ -0.49
CCDC88B-207ENST00000479965 FASNP49327 2511 aaKnown RBP11.96□□□□□ -0.49
CCDC88B-207ENST00000479965 SPRR1AP35321 89 aa11.95□□□□□ -0.5
CCDC88B-207ENST00000479965 CASC10Q5T4H9 136 aa11.95□□□□□ -0.5
CCDC88B-207ENST00000479965 KRTAP7-1Q8IUC3 87 aa11.95□□□□□ -0.5
CCDC88B-207ENST00000479965 LINC01556Q5JQF7 62 aa11.93□□□□□ -0.5
CCDC88B-207ENST00000479965 PRLHP81277 87 aa11.93□□□□□ -0.5
CCDC88B-207ENST00000479965 REG3GQ6UW15 175 aa11.91□□□□□ -0.5
CCDC88B-207ENST00000479965 Q8N9P0 234 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-207ENST00000479965 CASC2Q6XLA1 102 aa11.91□□□□□ -0.5
CCDC88B-207ENST00000479965 UBE2AP49459 152 aa11.9□□□□□ -0.5
CCDC88B-207ENST00000479965 TENM3Q9P273 2699 aa11.89□□□□□ -0.51
CCDC88B-207ENST00000479965 PLA2G2DQ9UNK4 145 aa11.89□□□□□ -0.51
CCDC88B-207ENST00000479965 DEFB131BA0A096LNP1 70 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms