RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 MYO9AB2RTY4 2548 aa8.1□□□□□ -1.11
PTPRE-208ENST00000479896 MUC4Q99102 2169 aa8.1□□□□□ -1.11
PTPRE-208ENST00000479896 CNBPP62633 177 aaKnown RBP8.09□□□□□ -1.11
PTPRE-208ENST00000479896 Q8N377 158 aa8.09□□□□□ -1.11
PTPRE-208ENST00000479896 SRCAPQ6ZRS2 3230 aa8.09□□□□□ -1.11
PTPRE-208ENST00000479896 ABCA12Q86UK0 2595 aa8.09□□□□□ -1.11
PTPRE-208ENST00000479896 SPRR4Q96PI1 79 aa8.09□□□□□ -1.11
PTPRE-208ENST00000479896 ANAPC11Q9NYG5 84 aa8.09□□□□□ -1.11
PTPRE-208ENST00000479896 MIR22HGQ0VDD5 57 aa8.08□□□□□ -1.12
PTPRE-208ENST00000479896 GIG44P09565 113 aaPredicted RBP8.07□□□□□ -1.12
PTPRE-208ENST00000479896 TLN1Q9Y490 2541 aaKnown RBP8.07□□□□□ -1.12
PTPRE-208ENST00000479896 A0A1W2PNN7 141 aa8.06□□□□□ -1.12
PTPRE-208ENST00000479896 LINC01554Q52M75 96 aa8.05□□□□□ -1.12
PTPRE-208ENST00000479896 A8MUN3 132 aa8.03□□□□□ -1.12
PTPRE-208ENST00000479896 Q6ZSA8 131 aa8.03□□□□□ -1.12
PTPRE-208ENST00000479896 FN1P02751 2386 aaKnown RBP8.02□□□□□ -1.13
PTPRE-208ENST00000479896 A0A0G2JQZ4 141 aa8.02□□□□□ -1.13
PTPRE-208ENST00000479896 ZFYVE26Q68DK2 2539 aa8.01□□□□□ -1.13
PTPRE-208ENST00000479896 CASC10Q5T4H9 136 aa8□□□□□ -1.13
PTPRE-208ENST00000479896 GOLGB1Q14789 3259 aaKnown RBP8□□□□□ -1.13
PTPRE-208ENST00000479896 IGLV5-48A0A075B6I7 105 aa7.99□□□□□ -1.13
PTPRE-208ENST00000479896 FAM104AQ969W3 186 aa7.98□□□□□ -1.13
PTPRE-208ENST00000479896 PCSK5Q92824 1860 aa7.98□□□□□ -1.13
PTPRE-208ENST00000479896 ZNF462Q96JM2 2506 aa7.97□□□□□ -1.13
PTPRE-208ENST00000479896 CDC42SE1Q9NRR8 79 aa7.97□□□□□ -1.13
PTPRE-208ENST00000479896 A0A0D9SG42 100 aa7.97□□□□□ -1.13
PTPRE-208ENST00000479896 IGLV7-46A0A075B6I9 117 aa7.97□□□□□ -1.13
PTPRE-208ENST00000479896 KRTAP1-3Q8IUG1 177 aa7.97□□□□□ -1.13
PTPRE-208ENST00000479896 Q8N1X5 172 aa7.96□□□□□ -1.13
PTPRE-208ENST00000479896 M0R2T5 61 aa7.96□□□□□ -1.14
PTPRE-208ENST00000479896 CD164Q04900 197 aa7.95□□□□□ -1.14
PTPRE-208ENST00000479896 TNP2Q05952 138 aa7.95□□□□□ -1.14
PTPRE-208ENST00000479896 EIF4EBP3O60516 100 aaPredicted RBP7.94□□□□□ -1.14
PTPRE-208ENST00000479896 KRTAP1-1Q07627 177 aa7.93□□□□□ -1.14
PTPRE-208ENST00000479896 USP9XQ93008 2570 aaPredicted RBP7.93□□□□□ -1.14
PTPRE-208ENST00000479896 KLKP1Q107X0 134 aa7.92□□□□□ -1.14
PTPRE-208ENST00000479896 A0A1W2PNM2 257 aa7.9□□□□□ -1.14
PTPRE-208ENST00000479896 SPANXA2-OT1Q8N9U9 137 aa7.88□□□□□ -1.15
PTPRE-208ENST00000479896 PRR26Q8N8Z3 221 aa7.88□□□□□ -1.15
PTPRE-208ENST00000479896 TLN2Q9Y4G6 2542 aa7.88□□□□□ -1.15
PTPRE-208ENST00000479896 CAMK2N1Q7Z7J9 78 aa7.87□□□□□ -1.15
PTPRE-208ENST00000479896 ANKRD11Q6UB99 2663 aaPredicted RBP7.86□□□□□ -1.15
PTPRE-208ENST00000479896 FAM229BQ4G0N7 80 aa7.85□□□□□ -1.15
PTPRE-208ENST00000479896 CHD8Q9HCK8 2581 aa7.83□□□□□ -1.16
PTPRE-208ENST00000479896 LINC00483Q53H64 154 aa7.83□□□□□ -1.16
PTPRE-208ENST00000479896 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.82□□□□□ -1.16
PTPRE-208ENST00000479896 ANKRD17O75179 2603 aaKnown RBP7.81□□□□□ -1.16
PTPRE-208ENST00000479896 LUZP6Q538Z0 58 aa7.8□□□□□ -1.16
PTPRE-208ENST00000479896 H7BZZ5 65 aa7.8□□□□□ -1.16
PTPRE-208ENST00000479896 HRES1P13985 223 aa7.78□□□□□ -1.16
PTPRE-208ENST00000479896 UTRNP46939 3433 aa7.78□□□□□ -1.16
PTPRE-208ENST00000479896 CEP295Q9C0D2 2601 aa7.78□□□□□ -1.16
PTPRE-208ENST00000479896 F8P00451 2351 aa7.77□□□□□ -1.16
PTPRE-208ENST00000479896 PLAC8Q9NZF1 115 aa7.77□□□□□ -1.17
PTPRE-208ENST00000479896 PKD1L2Q7Z442 2459 aa7.76□□□□□ -1.17
PTPRE-208ENST00000479896 USP9YO00507 2555 aaPredicted RBP7.76□□□□□ -1.17
PTPRE-208ENST00000479896 CSAG1Q6PB30 78 aa7.75□□□□□ -1.17
PTPRE-208ENST00000479896 S4R3F8 94 aa7.75□□□□□ -1.17
PTPRE-208ENST00000479896 LCA10Q71F78 164 aa7.74□□□□□ -1.17
PTPRE-208ENST00000479896 KTN1-AS1Q86SY8 53 aa7.74□□□□□ -1.17
PTPRE-208ENST00000479896 ZCCHC13Q8WW36 166 aaKnown RBP7.74□□□□□ -1.17
PTPRE-208ENST00000479896 A0A1B0GU33 70 aa7.73□□□□□ -1.17
PTPRE-208ENST00000479896 Q1T7F1 81 aa7.73□□□□□ -1.17
PTPRE-208ENST00000479896 WIPF1O43516 503 aa7.73□□□□□ -1.17
PTPRE-208ENST00000479896 SETD2Q9BYW2 2564 aaPredicted RBP7.73□□□□□ -1.17
PTPRE-208ENST00000479896 SEC61BP60468 96 aaKnown RBP7.72□□□□□ -1.17
PTPRE-208ENST00000479896 MTORP42345 2549 aa7.71□□□□□ -1.18
PTPRE-208ENST00000479896 Q5VSD8 79 aa7.68□□□□□ -1.18
PTPRE-208ENST00000479896 OCR1Q9BZK8 76 aa7.66□□□□□ -1.18
PTPRE-208ENST00000479896 FASNP49327 2511 aaKnown RBP7.65□□□□□ -1.18
PTPRE-208ENST00000479896 SPTBN4Q9H254 2564 aa7.65□□□□□ -1.18
PTPRE-208ENST00000479896 DMAC1Q96GE9 116 aa7.65□□□□□ -1.19
PTPRE-208ENST00000479896 POLQO75417 2590 aa7.65□□□□□ -1.19
PTPRE-208ENST00000479896 ACANP16112 2415 aa7.65□□□□□ -1.19
PTPRE-208ENST00000479896 LCE6AA0A183 80 aa7.63□□□□□ -1.19
PTPRE-208ENST00000479896 MMP24-AS1A0A0U1RRL7 71 aa7.62□□□□□ -1.19
PTPRE-208ENST00000479896 R4GN34 69 aa7.6□□□□□ -1.19
PTPRE-208ENST00000479896 SPRR1AP35321 89 aa7.57□□□□□ -1.2
PTPRE-208ENST00000479896 SPINK7P58062 85 aa7.57□□□□□ -1.2
PTPRE-208ENST00000479896 Q8N9P0 234 aaPredicted RBP7.56□□□□□ -1.2
PTPRE-208ENST00000479896 Q5W150 140 aa7.56□□□□□ -1.2
PTPRE-208ENST00000479896 WDR87Q6ZQQ6 2873 aa7.56□□□□□ -1.2
PTPRE-208ENST00000479896 SPRR1BP22528 89 aa7.55□□□□□ -1.2
PTPRE-208ENST00000479896 Q75L30 129 aa7.55□□□□□ -1.2
PTPRE-208ENST00000479896 CEP350Q5VT06 3117 aa7.54□□□□□ -1.2
PTPRE-208ENST00000479896 OXTP01178 125 aa7.54□□□□□ -1.2
PTPRE-208ENST00000479896 KRTAP10-1P60331 282 aa7.52□□□□□ -1.21
PTPRE-208ENST00000479896 LINC01558Q9Y6Z2 57 aa7.51□□□□□ -1.21
PTPRE-208ENST00000479896 FP248Q71RG6 208 aaPredicted RBP7.51□□□□□ -1.21
PTPRE-208ENST00000479896 LINC00472Q9H8W2 130 aa7.49□□□□□ -1.21
PTPRE-208ENST00000479896 CENPFP49454 3210 aa7.47□□□□□ -1.21
PTPRE-208ENST00000479896 KRTAP1-5Q9BYS1 174 aa7.47□□□□□ -1.21
PTPRE-208ENST00000479896 KRTAP10-2P60368 255 aa7.47□□□□□ -1.21
PTPRE-208ENST00000479896 PLAC4Q8WY50 150 aa7.46□□□□□ -1.22
PTPRE-208ENST00000479896 Q8NDZ9 215 aa7.44□□□□□ -1.22
PTPRE-208ENST00000479896 CR1P17927 2039 aa7.44□□□□□ -1.22
PTPRE-208ENST00000479896 M0QZ58 72 aa7.44□□□□□ -1.22
PTPRE-208ENST00000479896 HECTD1Q9ULT8 2610 aa7.41□□□□□ -1.22
PTPRE-208ENST00000479896 EPG5Q9HCE0 2579 aa7.4□□□□□ -1.22
PTPRE-208ENST00000479896 Q5XG85 94 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms