RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 A0A0U1RQV1 116 aa4.09□□□□□ -1.75
CCDC88A-213ENST00000476903 C1orf195Q5TG92 126 aa4.09□□□□□ -1.75
CCDC88A-213ENST00000476903 PRR26Q8N8Z3 221 aa4.09□□□□□ -1.75
CCDC88A-213ENST00000476903 SNHG12Q9BXW3 62 aa4.09□□□□□ -1.75
CCDC88A-213ENST00000476903 ZNF861PO60384 105 aa4.08□□□□□ -1.76
CCDC88A-213ENST00000476903 KRTAP1-4P0C5Y4 121 aa4.08□□□□□ -1.76
CCDC88A-213ENST00000476903 ZNF22P17026 224 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-213ENST00000476903 PMCHL1Q16048 86 aa4.08□□□□□ -1.76
CCDC88A-213ENST00000476903 LCE1FQ5T754 118 aa4.08□□□□□ -1.76
CCDC88A-213ENST00000476903 URB1-AS1Q96HZ7 61 aa4.08□□□□□ -1.76
CCDC88A-213ENST00000476903 SPANXDQ9BXN6 97 aa4.08□□□□□ -1.76
CCDC88A-213ENST00000476903 LRP2P98164 4655 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 IGLV5-37A0A075B6J1 123 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 IGLV5-39A0A0G2JS06 123 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 RPL37AP8A6NKH3 93 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 BCE1O60756 84 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 RPL28P46779 137 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 BATFQ16520 125 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 SFTA2Q6UW10 78 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 NKAPP1Q8N9T2 125 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 LINC00167Q96N53 147 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 PPDPFQ9H3Y8 114 aa4.07□□□□□ -1.76
CCDC88A-213ENST00000476903 C11orf86A6NJI1 115 aa4.06□□□□□ -1.76
CCDC88A-213ENST00000476903 PFN2P35080 140 aa4.06□□□□□ -1.76
CCDC88A-213ENST00000476903 COX17Q14061 63 aa4.06□□□□□ -1.76
CCDC88A-213ENST00000476903 C4orf26Q17RF5 130 aa4.06□□□□□ -1.76
CCDC88A-213ENST00000476903 TMEM170BQ5T4T1 132 aa4.06□□□□□ -1.76
CCDC88A-213ENST00000476903 BAGE3Q86Y29 109 aa4.06□□□□□ -1.76
CCDC88A-213ENST00000476903 CHCHD1Q96BP2 118 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-213ENST00000476903 PYY3Q5JQD4 70 aa4.05□□□□□ -1.76
CCDC88A-213ENST00000476903 GTF2H5Q6ZYL4 71 aa4.05□□□□□ -1.76
CCDC88A-213ENST00000476903 YPEL4Q96NS1 127 aa4.05□□□□□ -1.76
CCDC88A-213ENST00000476903 TRAV12-1A0A0B4J245 112 aa4.04□□□□□ -1.76
CCDC88A-213ENST00000476903 UBE2AP49459 152 aa4.04□□□□□ -1.76
CCDC88A-213ENST00000476903 IFI27L1Q96BM0 104 aa4.04□□□□□ -1.76
CCDC88A-213ENST00000476903 ZNF625Q96I27 306 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-213ENST00000476903 SND1-IT1Q9HBX3 110 aa4.04□□□□□ -1.76
CCDC88A-213ENST00000476903 RNF213Q63HN8 5207 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 IGKV2-28A0A075B6P5 120 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 TMEM223A0PJW6 202 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 NDUFC2O95298 119 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 IGKV2D-28P01615 120 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 CBLN2Q8IUK8 224 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 PLEKHB2Q96CS7 222 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 LAMTOR3Q9UHA4 124 aa4.03□□□□□ -1.76
CCDC88A-213ENST00000476903 A6NDN8 102 aa4.02□□□□□ -1.77
CCDC88A-213ENST00000476903 CRYGAP11844 174 aa4.02□□□□□ -1.77
CCDC88A-213ENST00000476903 LINC00158P58513 81 aa4.02□□□□□ -1.77
CCDC88A-213ENST00000476903 KRTAP13-1Q8IUC0 172 aa4.02□□□□□ -1.77
CCDC88A-213ENST00000476903 KRTAP4-3Q9BYR4 195 aa4.02□□□□□ -1.77
CCDC88A-213ENST00000476903 A0A087X002 238 aa4.01□□□□□ -1.77
CCDC88A-213ENST00000476903 JOSD1Q15040 202 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-213ENST00000476903 TYMSOSQ8TAI1 123 aa4.01□□□□□ -1.77
CCDC88A-213ENST00000476903 ANAPC13Q9BS18 74 aa4.01□□□□□ -1.77
CCDC88A-213ENST00000476903 FAM240AA0A1B0GVK7 77 aa4□□□□□ -1.77
CCDC88A-213ENST00000476903 TRGC2P03986 189 aa4□□□□□ -1.77
CCDC88A-213ENST00000476903 PRLHP81277 87 aa4□□□□□ -1.77
CCDC88A-213ENST00000476903 PRR4Q16378 134 aa4□□□□□ -1.77
CCDC88A-213ENST00000476903 FAM229BQ4G0N7 80 aa4□□□□□ -1.77
CCDC88A-213ENST00000476903 FAM19A2Q8N3H0 131 aa4□□□□□ -1.77
CCDC88A-213ENST00000476903 Q8NDZ9 215 aa4□□□□□ -1.77
CCDC88A-213ENST00000476903 M0R378 163 aa3.99□□□□□ -1.77
CCDC88A-213ENST00000476903 LEPROTL1O95214 131 aa3.99□□□□□ -1.77
CCDC88A-213ENST00000476903 SMIM13P0DJ93 91 aa3.99□□□□□ -1.77
CCDC88A-213ENST00000476903 PMAIP1Q13794 54 aa3.99□□□□□ -1.77
CCDC88A-213ENST00000476903 MEIG1Q5JSS6 88 aa3.99□□□□□ -1.77
CCDC88A-213ENST00000476903 ANAPC11Q9NYG5 84 aa3.99□□□□□ -1.77
CCDC88A-213ENST00000476903 MYMXA0A1B0GTQ4 84 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 C9JAW5 83 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 SERF1AO75920 110 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 PLNP26678 52 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 HSD52Q0P140 79 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 MIR7-3HGQ8N6C7 128 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 NDUFA12Q9UI09 145 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 LPAP08519 4548 aa3.98□□□□□ -1.77
CCDC88A-213ENST00000476903 IGKV2D-26A0A0A0MRZ7 120 aa3.97□□□□□ -1.77
CCDC88A-213ENST00000476903 NCR3O14931 201 aa3.97□□□□□ -1.77
CCDC88A-213ENST00000476903 LEPROTO15243 131 aa3.97□□□□□ -1.77
CCDC88A-213ENST00000476903 HERVK_113P61574 105 aa3.97□□□□□ -1.77
CCDC88A-213ENST00000476903 KRTAP13-2Q52LG2 175 aa3.97□□□□□ -1.77
CCDC88A-213ENST00000476903 DPM2O94777 84 aa3.96□□□□□ -1.78
CCDC88A-213ENST00000476903 FABP4P15090 132 aa3.96□□□□□ -1.78
CCDC88A-213ENST00000476903 TSPEAR-AS2P59090 65 aa3.96□□□□□ -1.78
CCDC88A-213ENST00000476903 LINC00304Q8N9R0 145 aa3.96□□□□□ -1.78
CCDC88A-213ENST00000476903 MIEN1Q9BRT3 115 aa3.96□□□□□ -1.78
CCDC88A-213ENST00000476903 HIGD2AQ9BW72 106 aa3.96□□□□□ -1.78
CCDC88A-213ENST00000476903 COLCA2A8K830 154 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 J3QQQ9 107 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 IGKCP01834 107 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 LGALS3P17931 250 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 NMUP48645 174 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 Q75L30 129 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 LINC00337Q8N6G1 96 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 PMCHL2Q9BQD1 86 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 KCNQ1DNQ9H478 68 aa3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 ZNF706Q9Y5V0 76 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-213ENST00000476903 LOC107984156A0A0G2JMH3 177 aa3.94□□□□□ -1.78
CCDC88A-213ENST00000476903 ETDCA0A1B0GVM5 59 aa3.94□□□□□ -1.78
CCDC88A-213ENST00000476903 SPRR1AP35321 89 aa3.94□□□□□ -1.78
CCDC88A-213ENST00000476903 Q6Q795 121 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 310.1 ms