RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	TRAV12-3	A0A0B4J271	114 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		A0A1B0GV90	55 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		A8MTW9	85 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	LINC00587	B1AMM8	73 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		F8VRH5	84 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		H0YGX0	51 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		H3BQF6	201 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SYS1-DBNDD2	H3BUS1	97 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		H7BZZ5	65 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		K7EQZ3	153 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SPINK4	O60575	86 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	LEPROTL1	O95214	131 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	HMGN2	P05204	90 aa	Known RBP	0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	UQCRH	P07919	91 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SMIM13	P0DJ93	91 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	IGLC2	P0DOY2	106 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	IGLC3	P0DOY3	106 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	COX8A	P10176	69 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	UBE2D1	P51668	147 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	CCL18	P55774	89 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	UBA52	P62987	128 aa	Known RBP	0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	PEA15	Q15121	130 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	PLGLA	Q15195	96 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	ADIRF	Q15847	76 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	BVES-AS1	Q5T3Y7	98 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		Q6JHZ5	121 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		Q6ZRX8	168 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	CYP2G1P	Q6ZSU1	146 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SMIM5	Q71RC9	77 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	BAGE2	Q86Y30	109 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		Q8N8P6	123 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	COX7B2	Q8TF08	81 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	LSM10	Q969L4	123 aa	Known RBP	0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	PRR15L	Q9BU68	103 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	NMES1	Q9C002	83 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	LINC00472	Q9H8W2	130 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	TP53AIP1	Q9HCN2	124 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	NXT2	Q9NPJ8	142 aa	Known RBP	0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SMCO4	Q9NRQ5	59 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	NDUFA4L2	Q9NRX3	87 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	NDUFA12	Q9UI09	145 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	UBE2D4	Q9Y2X8	147 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SPCS1	Q9Y6A9	102 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044		V9GYV3	84 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SHPRH	Q149N8	1683 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	PARP14	Q460N5	1801 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	USF3	Q68DE3	2245 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	TIAM1	Q13009	1591 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	NWD1	Q149M9	1564 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SAMD9	Q5K651	1589 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	MYCBP2	O75592	4640 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SUPT6H	Q7KZ85	1726 aa	Known RBP	0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	DNAH11	Q96DT5	4516 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	PRX	Q9BXM0	1461 aa		0.1	□□□□□ -2.39
PTCD3-209	ENST00000472044	SACS	Q9NZJ4	4579 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	LRP1B	Q9NZR2	4599 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	TMEM131L	A2VDJ0	1609 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	DEPDC5	O75140	1603 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	LAMC1	P11047	1609 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	USP32	Q8NFA0	1604 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	ALK	Q9UM73	1620 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	MUC17	Q685J3	4493 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	SIPA1L3	O60292	1781 aa	Predicted RBP	0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	KDM3B	Q7LBC6	1761 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	MYH6	P13533	1939 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	TCHH	Q07283	1943 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	EFCAB6	Q5THR3	1501 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	CLASP1	Q7Z460	1538 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	LMTK2	Q8IWU2	1503 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	ABCA10	Q8WWZ4	1543 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	WIZ	O95785	1651 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	KDM5A	P29375	1690 aa	Known RBP	0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	NHS	Q6T4R5	1651 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	TOPAZ1	Q8N9V7	1692 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044	KIF20B	Q96Q89	1820 aa		0.09	□□□□□ -2.39
PTCD3-209	ENST00000472044		A0A087WXM4	84 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	GVQW2	A0A096LPI5	108 aa	Predicted RBP	0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	TRGV1	A0A0A0MS02	117 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	TRAV22	A0A0B4J277	110 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	TRBV7-4	A0A0J9YYF1	115 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	TRBV6-1	A0A0K0K1D8	114 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	MYMX	A0A1B0GTQ4	84 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044		A0A1B0GUT8	65 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	IGLC7	A0M8Q6	106 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	C9orf92	A6NGG3	77 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	LINC01546	A6NGU7	62 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	CEBPZOS	A8MTT3	80 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	SNRPGP15	A8MWD9	76 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044		H3BUA1	57 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044		K7EP34	96 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044		M0R135	149 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	TFF1	P04155	84 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	IFI6	P09912	130 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	ARMS2	P0C7Q2	107 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	ACYP2	P14621	99 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	IFI27	P40305	119 aa	Predicted RBP	0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	GNG11	P61952	73 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	SPAG11B	Q08648	103 aa		0.09	□□□□□ -2.4
PTCD3-209	ENST00000472044	CATR1	Q13166	79 aa		0.09	□□□□□ -2.4

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