RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 M0R143 59 aa9.69□□□□□ -0.86
USP40-206ENST00000443711 SPRR1AP35321 89 aa9.69□□□□□ -0.86
USP40-206ENST00000443711 BVES-AS1Q5T3Y7 98 aa9.69□□□□□ -0.86
USP40-206ENST00000443711 ETDCA0A1B0GVM5 59 aa9.68□□□□□ -0.86
USP40-206ENST00000443711 ZNF73O43830 326 aaPredicted RBP9.68□□□□□ -0.86
USP40-206ENST00000443711 RPL13AP40429 203 aaKnown RBP9.68□□□□□ -0.86
USP40-206ENST00000443711 FAM19A1Q7Z5A9 133 aa9.68□□□□□ -0.86
USP40-206ENST00000443711 UBE2AP49459 152 aa9.67□□□□□ -0.86
USP40-206ENST00000443711 HINT1P49773 126 aaPredicted RBP9.67□□□□□ -0.86
USP40-206ENST00000443711 NHP2Q9NX24 153 aaKnown RBP9.67□□□□□ -0.86
USP40-206ENST00000443711 PRO1854Q9UHT4 67 aa9.67□□□□□ -0.86
USP40-206ENST00000443711 RPL28P46779 137 aaKnown RBP9.66□□□□□ -0.86
USP40-206ENST00000443711 DIRC1Q969H9 104 aa9.66□□□□□ -0.86
USP40-206ENST00000443711 KRTAP4-16G5E9R7 235 aaPredicted RBP9.65□□□□□ -0.86
USP40-206ENST00000443711 ZNF861PO60384 105 aa9.65□□□□□ -0.86
USP40-206ENST00000443711 SMIM11BQ8TCY0 68 aa9.65□□□□□ -0.86
USP40-206ENST00000443711 FAT1Q14517 4588 aa9.65□□□□□ -0.86
USP40-206ENST00000443711 A0A1B0GWB2 263 aa9.64□□□□□ -0.87
USP40-206ENST00000443711 H0Y9J4 135 aa9.64□□□□□ -0.87
USP40-206ENST00000443711 C6orf99Q4VX62 202 aa9.64□□□□□ -0.87
USP40-206ENST00000443711 SRRM2Q9UQ35 2752 aaKnown RBP9.64□□□□□ -0.87
USP40-206ENST00000443711 VPS13BQ7Z7G8 4022 aa9.64□□□□□ -0.87
USP40-206ENST00000443711 B5MCH6 92 aa9.63□□□□□ -0.87
USP40-206ENST00000443711 H7C2G1 150 aa9.63□□□□□ -0.87
USP40-206ENST00000443711 PRLHP81277 87 aa9.63□□□□□ -0.87
USP40-206ENST00000443711 SPINK6Q6UWN8 80 aa9.63□□□□□ -0.87
USP40-206ENST00000443711 KRTAP13-1Q8IUC0 172 aa9.63□□□□□ -0.87
USP40-206ENST00000443711 TRBV7-6A0A0J9YX20 115 aa9.62□□□□□ -0.87
USP40-206ENST00000443711 COX7BP24311 80 aa9.61□□□□□ -0.87
USP40-206ENST00000443711 VAMP3Q15836 100 aa9.61□□□□□ -0.87
USP40-206ENST00000443711 Q6ZRX8 168 aa9.61□□□□□ -0.87
USP40-206ENST00000443711 KRTAP4-5Q9BYR2 181 aa9.61□□□□□ -0.87
USP40-206ENST00000443711 K7ERJ3 54 aa9.6□□□□□ -0.87
USP40-206ENST00000443711 Q1RN00 199 aa9.6□□□□□ -0.87
USP40-206ENST00000443711 HIGD2AQ9BW72 106 aa9.59□□□□□ -0.87
USP40-206ENST00000443711 INAFM2P0DMQ5 153 aa9.58□□□□□ -0.88
USP40-206ENST00000443711 ELOF1P60002 83 aaKnown RBP9.58□□□□□ -0.88
USP40-206ENST00000443711 BATFQ16520 125 aa9.58□□□□□ -0.88
USP40-206ENST00000443711 PCLOQ9Y6V0 5065 aa9.56□□□□□ -0.88
USP40-206ENST00000443711 PCP4L1A6NKN8 68 aa9.56□□□□□ -0.88
USP40-206ENST00000443711 SMCR5Q8TEV8 140 aa9.56□□□□□ -0.88
USP40-206ENST00000443711 DHRS4-AS1Q9P1J3 65 aa9.56□□□□□ -0.88
USP40-206ENST00000443711 Q9BRP9 147 aa9.55□□□□□ -0.88
USP40-206ENST00000443711 TSPAN13O95857 204 aa9.54□□□□□ -0.88
USP40-206ENST00000443711 H0YGX0 51 aa9.53□□□□□ -0.88
USP40-206ENST00000443711 PSMB2P49721 201 aa9.53□□□□□ -0.88
USP40-206ENST00000443711 PKHD1L1Q86WI1 4243 aa9.51□□□□□ -0.89
USP40-206ENST00000443711 TRIAP1O43715 76 aa9.51□□□□□ -0.89
USP40-206ENST00000443711 SLC25A20O43772 301 aa9.51□□□□□ -0.89
USP40-206ENST00000443711 ERC2-IT1O76042 136 aa9.51□□□□□ -0.89
USP40-206ENST00000443711 COX6CP09669 75 aa9.51□□□□□ -0.89
USP40-206ENST00000443711 LINC00575Q6W349 94 aa9.5□□□□□ -0.89
USP40-206ENST00000443711 SNHG12Q9BXW3 62 aa9.5□□□□□ -0.89
USP40-206ENST00000443711 ZNF706Q9Y5V0 76 aaPredicted RBP9.5□□□□□ -0.89
USP40-206ENST00000443711 FLG2Q5D862 2391 aaPredicted RBP9.49□□□□□ -0.89
USP40-206ENST00000443711 SNCGO76070 127 aa9.48□□□□□ -0.89
USP40-206ENST00000443711 hADV29S1A0JD25 119 aa9.47□□□□□ -0.89
USP40-206ENST00000443711 SPRR4Q96PI1 79 aa9.47□□□□□ -0.89
USP40-206ENST00000443711 SCGB1C2P0DMR2 95 aa9.46□□□□□ -0.9
USP40-206ENST00000443711 ABCA13Q86UQ4 5058 aa9.46□□□□□ -0.9
USP40-206ENST00000443711 KRTAP1-4P0C5Y4 121 aa9.45□□□□□ -0.9
USP40-206ENST00000443711 A0A1B0GX51 115 aa9.44□□□□□ -0.9
USP40-206ENST00000443711 COL5A1-AS1Q5SY13 56 aa9.44□□□□□ -0.9
USP40-206ENST00000443711 GAGE2AQ6NT46 116 aa9.44□□□□□ -0.9
USP40-206ENST00000443711 ST20-AS1Q8NBB2 130 aa9.44□□□□□ -0.9
USP40-206ENST00000443711 TAX1BP3O14907 124 aa9.43□□□□□ -0.9
USP40-206ENST00000443711 CLEC2BQ92478 149 aa9.43□□□□□ -0.9
USP40-206ENST00000443711 FAM218AQ96MZ4 157 aa9.43□□□□□ -0.9
USP40-206ENST00000443711 NAA38Q9BRA0 125 aaKnown RBP9.43□□□□□ -0.9
USP40-206ENST00000443711 C9orf118A6NHY6 69 aa9.42□□□□□ -0.9
USP40-206ENST00000443711 OXTP01178 125 aa9.42□□□□□ -0.9
USP40-206ENST00000443711 FAM229BQ4G0N7 80 aa9.42□□□□□ -0.9
USP40-206ENST00000443711 LINC01600Q96MT4 127 aa9.42□□□□□ -0.9
USP40-206ENST00000443711 ANAPC11Q9NYG5 84 aa9.42□□□□□ -0.9
USP40-206ENST00000443711 H3BUT2 72 aa9.41□□□□□ -0.9
USP40-206ENST00000443711 LINC00483Q53H64 154 aa9.41□□□□□ -0.9
USP40-206ENST00000443711 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.41□□□□□ -0.9
USP40-206ENST00000443711 Q6ZQY7 126 aa9.41□□□□□ -0.9
USP40-206ENST00000443711 CRYGAP11844 174 aa9.4□□□□□ -0.9
USP40-206ENST00000443711 LYRM7Q5U5X0 104 aa9.4□□□□□ -0.9
USP40-206ENST00000443711 DEFB105AQ8NG35 78 aa9.4□□□□□ -0.9
USP40-206ENST00000443711 TEX49A0A1B0GTD5 131 aa9.39□□□□□ -0.91
USP40-206ENST00000443711 SPRR1BP22528 89 aa9.39□□□□□ -0.91
USP40-206ENST00000443711 IGLV5-48A0A075B6I7 105 aa9.38□□□□□ -0.91
USP40-206ENST00000443711 KRTAP29-1A8MX34 341 aaPredicted RBP9.38□□□□□ -0.91
USP40-206ENST00000443711 LINC01547P58512 204 aaPredicted RBP9.37□□□□□ -0.91
USP40-206ENST00000443711 OCIAD2Q56VL3 154 aa9.37□□□□□ -0.91
USP40-206ENST00000443711 PRR26Q8N8Z3 221 aa9.37□□□□□ -0.91
USP40-206ENST00000443711 A0A087X002 238 aa9.36□□□□□ -0.91
USP40-206ENST00000443711 LST1O00453 97 aa9.36□□□□□ -0.91
USP40-206ENST00000443711 DNAL4O96015 105 aa9.36□□□□□ -0.91
USP40-206ENST00000443711 GHRHP01286 108 aa9.35□□□□□ -0.91
USP40-206ENST00000443711 TRACP01848 142 aa9.35□□□□□ -0.91
USP40-206ENST00000443711 Q8N377 158 aa9.35□□□□□ -0.91
USP40-206ENST00000443711 TRBV20-1A0A075B6N2 111 aa9.34□□□□□ -0.91
USP40-206ENST00000443711 A0A1W2PPM0 123 aa9.34□□□□□ -0.91
USP40-206ENST00000443711 FABP2P12104 132 aa9.34□□□□□ -0.91
USP40-206ENST00000443711 KRTAP10-8P60410 259 aa9.34□□□□□ -0.91
USP40-206ENST00000443711 ATXN8Q156A1 80 aa9.34□□□□□ -0.91
USP40-206ENST00000443711 PPDPFLQ8WWR9 84 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms