RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 C19orf73Q9NVV2 129 aa11.31□□□□□ -0.6
PTPRF-209ENST00000438120 DNAH12Q6ZR08 3092 aa11.3□□□□□ -0.6
PTPRF-209ENST00000438120 LOC101927531A0A1B0GV80 90 aa11.3□□□□□ -0.6
PTPRF-209ENST00000438120 PRR34Q9NV39 138 aa11.29□□□□□ -0.6
PTPRF-209ENST00000438120 C8orf87E5RJ46 101 aa11.28□□□□□ -0.6
PTPRF-209ENST00000438120 RPS28P62857 69 aaKnown RBP11.28□□□□□ -0.6
PTPRF-209ENST00000438120 OBSCN-AS1Q96MR7 158 aa11.28□□□□□ -0.6
PTPRF-209ENST00000438120 UTRNP46939 3433 aa11.27□□□□□ -0.61
PTPRF-209ENST00000438120 PRRC2CQ9Y520 2896 aaKnown RBP11.26□□□□□ -0.61
PTPRF-209ENST00000438120 A0A087WTM6 91 aa11.25□□□□□ -0.61
PTPRF-209ENST00000438120 COX6B2Q6YFQ2 88 aa11.25□□□□□ -0.61
PTPRF-209ENST00000438120 Q8N377 158 aa11.25□□□□□ -0.61
PTPRF-209ENST00000438120 CASC10Q5T4H9 136 aa11.25□□□□□ -0.61
PTPRF-209ENST00000438120 COA5Q86WW8 74 aa11.24□□□□□ -0.61
PTPRF-209ENST00000438120 LINC00304Q8N9R0 145 aa11.24□□□□□ -0.61
PTPRF-209ENST00000438120 ZNF861PO60384 105 aa11.24□□□□□ -0.61
PTPRF-209ENST00000438120 LINC01600Q96MT4 127 aa11.23□□□□□ -0.61
PTPRF-209ENST00000438120 USP24Q9UPU5 2620 aa11.23□□□□□ -0.61
PTPRF-209ENST00000438120 HECTD1Q9ULT8 2610 aa11.23□□□□□ -0.61
PTPRF-209ENST00000438120 C8orf17Q9NRJ1 99 aa11.23□□□□□ -0.61
PTPRF-209ENST00000438120 FLNBO75369 2602 aaKnown RBP11.22□□□□□ -0.61
PTPRF-209ENST00000438120 A8MUN3 132 aa11.2□□□□□ -0.62
PTPRF-209ENST00000438120 PRR15Q8IV56 129 aa11.19□□□□□ -0.62
PTPRF-209ENST00000438120 MGAM2Q2M2H8 2515 aa11.18□□□□□ -0.62
PTPRF-209ENST00000438120 C9orf163Q8N9P6 203 aa11.17□□□□□ -0.62
PTPRF-209ENST00000438120 A0A1B0GVX0 72 aa11.16□□□□□ -0.62
PTPRF-209ENST00000438120 LINC00612Q8N6U2 182 aa11.16□□□□□ -0.62
PTPRF-209ENST00000438120 SPINT4Q6UDR6 99 aa11.16□□□□□ -0.62
PTPRF-209ENST00000438120 APLNQ9ULZ1 77 aa11.15□□□□□ -0.62
PTPRF-209ENST00000438120 ERC2-IT1O76042 136 aa11.15□□□□□ -0.62
PTPRF-209ENST00000438120 SSBP3-AS1Q7Z2R9 100 aa11.15□□□□□ -0.62
PTPRF-209ENST00000438120 PSORS1C2Q9UIG4 136 aa11.14□□□□□ -0.63
PTPRF-209ENST00000438120 KRTAP1-3Q8IUG1 177 aa11.12□□□□□ -0.63
PTPRF-209ENST00000438120 IGLV7-43P04211 117 aa11.11□□□□□ -0.63
PTPRF-209ENST00000438120 TLX1NBP0CAT3 122 aa11.1□□□□□ -0.63
PTPRF-209ENST00000438120 BPTFQ12830 3046 aa11.1□□□□□ -0.63
PTPRF-209ENST00000438120 UQCR11O14957 56 aa11.07□□□□□ -0.64
PTPRF-209ENST00000438120 CEP350Q5VT06 3117 aa11.07□□□□□ -0.64
PTPRF-209ENST00000438120 PLA2G2DQ9UNK4 145 aa11.06□□□□□ -0.64
PTPRF-209ENST00000438120 KRTAP1-1Q07627 177 aa11.05□□□□□ -0.64
PTPRF-209ENST00000438120 SPRR4Q96PI1 79 aa11.04□□□□□ -0.64
PTPRF-209ENST00000438120 A0A1W2PNM2 257 aa11.03□□□□□ -0.64
PTPRF-209ENST00000438120 IGLV5-37A0A075B6J1 123 aa11.03□□□□□ -0.64
PTPRF-209ENST00000438120 ZNF575Q86XF7 245 aa11.02□□□□□ -0.64
PTPRF-209ENST00000438120 MIR22HGQ0VDD5 57 aa11.01□□□□□ -0.65
PTPRF-209ENST00000438120 Q8N1X5 172 aa11□□□□□ -0.65
PTPRF-209ENST00000438120 LINC01554Q52M75 96 aa11□□□□□ -0.65
PTPRF-209ENST00000438120 CNBPP62633 177 aaKnown RBP10.99□□□□□ -0.65
PTPRF-209ENST00000438120 KLKP1Q107X0 134 aa10.98□□□□□ -0.65
PTPRF-209ENST00000438120 CYP4F30PQ9H0H9 118 aa10.97□□□□□ -0.65
PTPRF-209ENST00000438120 A0A0D9SG42 100 aa10.95□□□□□ -0.66
PTPRF-209ENST00000438120 IGLV5-48A0A075B6I7 105 aa10.94□□□□□ -0.66
PTPRF-209ENST00000438120 H7BZZ5 65 aa10.94□□□□□ -0.66
PTPRF-209ENST00000438120 TNP2Q05952 138 aa10.94□□□□□ -0.66
PTPRF-209ENST00000438120 C5orf42Q9H799 3197 aa10.94□□□□□ -0.66
PTPRF-209ENST00000438120 LINC00336Q6ZUF6 198 aa10.93□□□□□ -0.66
PTPRF-209ENST00000438120 ATRQ13535 2644 aa10.93□□□□□ -0.66
PTPRF-209ENST00000438120 CRIPTQ9P021 101 aa10.93□□□□□ -0.66
PTPRF-209ENST00000438120 RBM12B-AS1Q9P1G2 102 aa10.91□□□□□ -0.66
PTPRF-209ENST00000438120 FLNAP21333 2647 aaKnown RBP10.87□□□□□ -0.67
PTPRF-209ENST00000438120 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-209ENST00000438120 FAM104AQ969W3 186 aa10.85□□□□□ -0.67
PTPRF-209ENST00000438120 PCNTO95613 3336 aa10.84□□□□□ -0.67
PTPRF-209ENST00000438120 MAST4O15021 2626 aa10.84□□□□□ -0.67
PTPRF-209ENST00000438120 ITPR3Q14573 2671 aa10.82□□□□□ -0.68
PTPRF-209ENST00000438120 PRR26Q8N8Z3 221 aa10.81□□□□□ -0.68
PTPRF-209ENST00000438120 CR1P17927 2039 aa10.79□□□□□ -0.68
PTPRF-209ENST00000438120 CHD7Q9P2D1 2997 aa10.75□□□□□ -0.69
PTPRF-209ENST00000438120 Q6ZSA8 131 aa10.74□□□□□ -0.69
PTPRF-209ENST00000438120 SPANXA2-OT1Q8N9U9 137 aa10.72□□□□□ -0.69
PTPRF-209ENST00000438120 IGLV7-46A0A075B6I9 117 aa10.72□□□□□ -0.69
PTPRF-209ENST00000438120 HELZ2Q9BYK8 2649 aaKnown RBP10.71□□□□□ -0.69
PTPRF-209ENST00000438120 CDC42SE1Q9NRR8 79 aa10.71□□□□□ -0.69
PTPRF-209ENST00000438120 OCR1Q9BZK8 76 aa10.69□□□□□ -0.7
PTPRF-209ENST00000438120 Q8NDZ9 215 aa10.66□□□□□ -0.7
PTPRF-209ENST00000438120 CFAP46Q8IYW2 2715 aa10.65□□□□□ -0.7
PTPRF-209ENST00000438120 CD164Q04900 197 aa10.64□□□□□ -0.71
PTPRF-209ENST00000438120 HRES1P13985 223 aa10.63□□□□□ -0.71
PTPRF-209ENST00000438120 CENPEQ02224 2701 aa10.63□□□□□ -0.71
PTPRF-209ENST00000438120 KTN1-AS1Q86SY8 53 aa10.62□□□□□ -0.71
PTPRF-209ENST00000438120 M0R2T5 61 aa10.61□□□□□ -0.71
PTPRF-209ENST00000438120 CFAP54Q96N23 3096 aa10.58□□□□□ -0.72
PTPRF-209ENST00000438120 LCA10Q71F78 164 aa10.56□□□□□ -0.72
PTPRF-209ENST00000438120 PLAC8Q9NZF1 115 aa10.56□□□□□ -0.72
PTPRF-209ENST00000438120 Q8N9P0 234 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-209ENST00000438120 CAMK2N1Q7Z7J9 78 aa10.55□□□□□ -0.72
PTPRF-209ENST00000438120 RANBP2P49792 3224 aaKnown RBP10.55□□□□□ -0.72
PTPRF-209ENST00000438120 WIPF1O43516 503 aa10.54□□□□□ -0.72
PTPRF-209ENST00000438120 MMP24-AS1A0A0U1RRL7 71 aa10.53□□□□□ -0.72
PTPRF-209ENST00000438120 A0A1B0GU33 70 aa10.53□□□□□ -0.72
PTPRF-209ENST00000438120 AKAP13Q12802 2813 aa10.52□□□□□ -0.73
PTPRF-209ENST00000438120 FAM229BQ4G0N7 80 aa10.51□□□□□ -0.73
PTPRF-209ENST00000438120 KRTAP1-5Q9BYS1 174 aa10.51□□□□□ -0.73
PTPRF-209ENST00000438120 ZCCHC13Q8WW36 166 aaKnown RBP10.5□□□□□ -0.73
PTPRF-209ENST00000438120 Q1T7F1 81 aa10.48□□□□□ -0.73
PTPRF-209ENST00000438120 LAMA3Q16787 3333 aa10.48□□□□□ -0.73
PTPRF-209ENST00000438120 SPRR1AP35321 89 aa10.47□□□□□ -0.73
PTPRF-209ENST00000438120 CHD6Q8TD26 2715 aa10.46□□□□□ -0.73
PTPRF-209ENST00000438120 MGAQ8IWI9 3026 aa10.46□□□□□ -0.73
PTPRF-209ENST00000438120 MKI67P46013 3256 aaKnown RBP10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 151.9 ms