RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PRR15Q8IV56 129 aa7.01□□□□□ -1.29
USP54-204ENST00000422491 C1orf64Q8NEQ6 169 aa7.01□□□□□ -1.29
USP54-204ENST00000422491 TENM4Q6N022 2769 aa7□□□□□ -1.29
USP54-204ENST00000422491 A0A1B0GW54 56 aa7□□□□□ -1.29
USP54-204ENST00000422491 SEC61GP60059 68 aa7□□□□□ -1.29
USP54-204ENST00000422491 KRTAP26-1Q6PEX3 210 aa7□□□□□ -1.29
USP54-204ENST00000422491 A0A1W2PNM2 257 aa6.99□□□□□ -1.29
USP54-204ENST00000422491 DEFB105AQ8NG35 78 aa6.99□□□□□ -1.29
USP54-204ENST00000422491 CCDC168Q8NDH2 2452 aa6.99□□□□□ -1.29
USP54-204ENST00000422491 LRCOL1A6NCL2 159 aa6.99□□□□□ -1.29
USP54-204ENST00000422491 HTN3P15516 51 aa6.99□□□□□ -1.29
USP54-204ENST00000422491 Q8NAQ8 132 aa6.99□□□□□ -1.29
USP54-204ENST00000422491 C15orf56Q8N910 161 aa6.98□□□□□ -1.29
USP54-204ENST00000422491 KCNQ1DNQ9H478 68 aa6.98□□□□□ -1.29
USP54-204ENST00000422491 TNP2Q05952 138 aa6.97□□□□□ -1.29
USP54-204ENST00000422491 FLNAP21333 2647 aaKnown RBP6.97□□□□□ -1.29
USP54-204ENST00000422491 HELZ2Q9BYK8 2649 aaKnown RBP6.97□□□□□ -1.29
USP54-204ENST00000422491 DSCR10P59022 87 aa6.97□□□□□ -1.29
USP54-204ENST00000422491 ETDCA0A1B0GVM5 59 aa6.96□□□□□ -1.3
USP54-204ENST00000422491 KRTAP10-3P60369 221 aa6.96□□□□□ -1.3
USP54-204ENST00000422491 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.95□□□□□ -1.3
USP54-204ENST00000422491 SPART-AS1P0CW21 52 aa6.95□□□□□ -1.3
USP54-204ENST00000422491 Q8NBF4 154 aa6.95□□□□□ -1.3
USP54-204ENST00000422491 CYP4F30PQ9H0H9 118 aa6.95□□□□□ -1.3
USP54-204ENST00000422491 K7EQZ3 153 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 KRTAP1-1Q07627 177 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 C1orf137Q5JT78 98 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 WFDC10BQ8IUB3 73 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 SPRR4Q96PI1 79 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 APOC4P55056 127 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 SERTAD4-AS1Q5TG53 156 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 C7orf33Q8WU49 177 aa6.94□□□□□ -1.3
USP54-204ENST00000422491 MTORP42345 2549 aa6.93□□□□□ -1.3
USP54-204ENST00000422491 TRAV22A0A0B4J277 110 aa6.93□□□□□ -1.3
USP54-204ENST00000422491 HIVEP2P31629 2446 aa6.93□□□□□ -1.3
USP54-204ENST00000422491 Q9BRP9 147 aa6.93□□□□□ -1.3
USP54-204ENST00000422491 PMAIP1Q13794 54 aa6.92□□□□□ -1.3
USP54-204ENST00000422491 Q6ZRX8 168 aa6.92□□□□□ -1.3
USP54-204ENST00000422491 ST20-AS1Q8NBB2 130 aa6.92□□□□□ -1.3
USP54-204ENST00000422491 DHRS4-AS1Q9P1J3 65 aa6.92□□□□□ -1.3
USP54-204ENST00000422491 KRTAP4-16G5E9R7 235 aaPredicted RBP6.92□□□□□ -1.3
USP54-204ENST00000422491 PSPHP1O15172 72 aa6.92□□□□□ -1.3
USP54-204ENST00000422491 NKAPP1Q8N9T2 125 aa6.92□□□□□ -1.3
USP54-204ENST00000422491 VWFP04275 2813 aa6.92□□□□□ -1.3
USP54-204ENST00000422491 FASNP49327 2511 aaKnown RBP6.9□□□□□ -1.3
USP54-204ENST00000422491 PSCAO43653 123 aa6.9□□□□□ -1.3
USP54-204ENST00000422491 PRR4Q16378 134 aa6.9□□□□□ -1.31
USP54-204ENST00000422491 HCG22E2RYF7 251 aa6.89□□□□□ -1.31
USP54-204ENST00000422491 SYCNQ0VAF6 134 aa6.89□□□□□ -1.31
USP54-204ENST00000422491 ACANP16112 2415 aa6.89□□□□□ -1.31
USP54-204ENST00000422491 SPRR1AP35321 89 aa6.89□□□□□ -1.31
USP54-204ENST00000422491 RPL37AP8A6NKH3 93 aa6.87□□□□□ -1.31
USP54-204ENST00000422491 NDUFB1O75438 58 aa6.87□□□□□ -1.31
USP54-204ENST00000422491 IGLV1-50A0A075B6I6 118 aa6.86□□□□□ -1.31
USP54-204ENST00000422491 PLA2G2DQ9UNK4 145 aa6.86□□□□□ -1.31
USP54-204ENST00000422491 HECTD1Q9ULT8 2610 aa6.86□□□□□ -1.31
USP54-204ENST00000422491 A8MUN3 132 aa6.86□□□□□ -1.31
USP54-204ENST00000422491 HIVEP1P15822 2718 aa6.86□□□□□ -1.31
USP54-204ENST00000422491 H3BNG1 76 aa6.85□□□□□ -1.31
USP54-204ENST00000422491 TLX1NBP0CAT3 122 aa6.85□□□□□ -1.31
USP54-204ENST00000422491 IGLV5-37A0A075B6J1 123 aa6.84□□□□□ -1.31
USP54-204ENST00000422491 IGKV2D-24A0A075B6R9 120 aa6.84□□□□□ -1.31
USP54-204ENST00000422491 FAM168BA1KXE4 195 aa6.84□□□□□ -1.31
USP54-204ENST00000422491 Q5VV11 94 aa6.84□□□□□ -1.31
USP54-204ENST00000422491 UNC79Q9P2D8 2635 aa6.83□□□□□ -1.32
USP54-204ENST00000422491 A8MU10 97 aa6.83□□□□□ -1.32
USP54-204ENST00000422491 J3QKU1 62 aa6.83□□□□□ -1.32
USP54-204ENST00000422491 KRTAP7-1Q8IUC3 87 aa6.83□□□□□ -1.32
USP54-204ENST00000422491 ITPR2Q14571 2701 aa6.83□□□□□ -1.32
USP54-204ENST00000422491 PRB2P02812 416 aaPredicted RBP6.82□□□□□ -1.32
USP54-204ENST00000422491 LINC00476Q8WZB0 136 aa6.82□□□□□ -1.32
USP54-204ENST00000422491 B9D2Q9BPU9 175 aa6.82□□□□□ -1.32
USP54-204ENST00000422491 MP68P56378 58 aa6.81□□□□□ -1.32
USP54-204ENST00000422491 WFDC13Q8IUB5 93 aa6.81□□□□□ -1.32
USP54-204ENST00000422491 A0A0G2JQZ4 141 aa6.81□□□□□ -1.32
USP54-204ENST00000422491 A0A1W2PNN7 141 aa6.81□□□□□ -1.32
USP54-204ENST00000422491 LINC01556Q5JQF7 62 aa6.81□□□□□ -1.32
USP54-204ENST00000422491 DEFB116Q30KQ4 102 aa6.8□□□□□ -1.32
USP54-204ENST00000422491 LINC00208Q96KT6 92 aa6.8□□□□□ -1.32
USP54-204ENST00000422491 PDZD2O15018 2839 aa6.8□□□□□ -1.32
USP54-204ENST00000422491 KRTAP29-1A8MX34 341 aaPredicted RBP6.8□□□□□ -1.32
USP54-204ENST00000422491 NOTCH2Q04721 2471 aa6.8□□□□□ -1.32
USP54-204ENST00000422491 IGFL1Q6UW32 110 aa6.8□□□□□ -1.32
USP54-204ENST00000422491 SPANXA2-OT1Q8N9U9 137 aa6.8□□□□□ -1.32
USP54-204ENST00000422491 UBE2BP63146 152 aa6.79□□□□□ -1.32
USP54-204ENST00000422491 Q8N9P0 234 aaPredicted RBP6.79□□□□□ -1.32
USP54-204ENST00000422491 MRPL55Q7Z7F7 128 aaKnown RBP6.78□□□□□ -1.32
USP54-204ENST00000422491 PKD1L1Q8TDX9 2849 aa6.77□□□□□ -1.32
USP54-204ENST00000422491 LIMD2Q9BT23 127 aa6.76□□□□□ -1.33
USP54-204ENST00000422491 A0A087WSZ3 146 aa6.76□□□□□ -1.33
USP54-204ENST00000422491 H0Y9P7 68 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 H3BPC8 53 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 UBE2AP49459 152 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 RPL37AP61513 92 aaKnown RBP6.75□□□□□ -1.33
USP54-204ENST00000422491 CD164Q04900 197 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 TRRAPQ9Y4A5 3859 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 IGLV8-61A0A075B6I0 122 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 C16orf90A8MZG2 172 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 CHKB-CPT1BH3BT56 60 aa6.75□□□□□ -1.33
USP54-204ENST00000422491 RETNQ9HD89 108 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms