RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 FLGP20930 4061 aaPredicted RBP7.49□□□□□ -1.21
VPS29-201ENST00000360579 TRBV10-2A0A0K0K1G8 114 aa7.49□□□□□ -1.21
VPS29-201ENST00000360579 SEC11CQ9BY50 192 aa7.49□□□□□ -1.21
VPS29-201ENST00000360579 C9orf92A6NGG3 77 aa7.48□□□□□ -1.21
VPS29-201ENST00000360579 PMCHL1Q16048 86 aa7.47□□□□□ -1.21
VPS29-201ENST00000360579 URB1-AS1Q96HZ7 61 aa7.47□□□□□ -1.21
VPS29-201ENST00000360579 LOC107984156A0A0G2JMH3 177 aa7.46□□□□□ -1.22
VPS29-201ENST00000360579 C5orf52A6NGY3 159 aa7.46□□□□□ -1.22
VPS29-201ENST00000360579 COX6B2Q6YFQ2 88 aa7.46□□□□□ -1.22
VPS29-201ENST00000360579 ARL17AQ8IVW1 177 aa7.46□□□□□ -1.22
VPS29-201ENST00000360579 C18orf32Q8TCD1 76 aa7.46□□□□□ -1.22
VPS29-201ENST00000360579 TRAV12-1A0A0B4J245 112 aa7.45□□□□□ -1.22
VPS29-201ENST00000360579 MYMXA0A1B0GTQ4 84 aa7.45□□□□□ -1.22
VPS29-201ENST00000360579 SPANXB1Q9NS25 103 aaPredicted RBP7.45□□□□□ -1.22
VPS29-201ENST00000360579 IGLV6-57P01721 117 aa7.44□□□□□ -1.22
VPS29-201ENST00000360579 S100A7L2Q5SY68 101 aa7.44□□□□□ -1.22
VPS29-201ENST00000360579 SLC25A34Q6PIV7 304 aa7.44□□□□□ -1.22
VPS29-201ENST00000360579 TRAV23DV6A0A075B6W5 121 aa7.42□□□□□ -1.22
VPS29-201ENST00000360579 UQCC3Q6UW78 93 aa7.42□□□□□ -1.22
VPS29-201ENST00000360579 MIEN1Q9BRT3 115 aa7.42□□□□□ -1.22
VPS29-201ENST00000360579 TMEM218A2RU14 115 aa7.41□□□□□ -1.22
VPS29-201ENST00000360579 HRCT1Q6UXD1 115 aa7.41□□□□□ -1.22
VPS29-201ENST00000360579 ST20-AS1Q8NBB2 130 aa7.41□□□□□ -1.22
VPS29-201ENST00000360579 ZNF73O43830 326 aaPredicted RBP7.4□□□□□ -1.22
VPS29-201ENST00000360579 NDUFC2O95298 119 aa7.4□□□□□ -1.22
VPS29-201ENST00000360579 HINT1P49773 126 aaPredicted RBP7.4□□□□□ -1.22
VPS29-201ENST00000360579 IFITM2Q01629 132 aa7.4□□□□□ -1.22
VPS29-201ENST00000360579 COMMD7Q86VX2 200 aa7.4□□□□□ -1.22
VPS29-201ENST00000360579 CBY1Q9Y3M2 126 aa7.4□□□□□ -1.22
VPS29-201ENST00000360579 TRAPPC1Q9Y5R8 145 aa7.4□□□□□ -1.22
VPS29-201ENST00000360579 SPRR1BP22528 89 aa7.39□□□□□ -1.23
VPS29-201ENST00000360579 IFI27L1Q96BM0 104 aa7.39□□□□□ -1.23
VPS29-201ENST00000360579 CD164Q04900 197 aa7.38□□□□□ -1.23
VPS29-201ENST00000360579 CLLU1Q5K131 121 aa7.38□□□□□ -1.23
VPS29-201ENST00000360579 KRTAP5-3Q6L8H2 238 aa7.38□□□□□ -1.23
VPS29-201ENST00000360579 LAMTOR3Q9UHA4 124 aa7.38□□□□□ -1.23
VPS29-201ENST00000360579 RPL37P61927 97 aaKnown RBP7.37□□□□□ -1.23
VPS29-201ENST00000360579 USH2AO75445 5202 aa7.37□□□□□ -1.23
VPS29-201ENST00000360579 SSPOA2VEC9 5147 aa7.35□□□□□ -1.23
VPS29-201ENST00000360579 RHEBQ15382 184 aa7.35□□□□□ -1.23
VPS29-201ENST00000360579 CHCHD1Q96BP2 118 aaKnown RBP7.35□□□□□ -1.23
VPS29-201ENST00000360579 LEPROTO15243 131 aa7.34□□□□□ -1.23
VPS29-201ENST00000360579 NMUP48645 174 aa7.34□□□□□ -1.23
VPS29-201ENST00000360579 Q5XG85 94 aa7.34□□□□□ -1.23
VPS29-201ENST00000360579 DHRS4-AS1Q9P1J3 65 aa7.34□□□□□ -1.23
VPS29-201ENST00000360579 TSPEAR-AS2P59090 65 aa7.33□□□□□ -1.24
VPS29-201ENST00000360579 PRO1933Q9H354 126 aa7.33□□□□□ -1.24
VPS29-201ENST00000360579 RPS10P5Q9NQ39 176 aa7.33□□□□□ -1.24
VPS29-201ENST00000360579 H7C2G1 150 aa7.32□□□□□ -1.24
VPS29-201ENST00000360579 J3QQQ9 107 aa7.31□□□□□ -1.24
VPS29-201ENST00000360579 CFC1P0CG37 223 aa7.3□□□□□ -1.24
VPS29-201ENST00000360579 HERVK_113P61574 105 aa7.3□□□□□ -1.24
VPS29-201ENST00000360579 C1orf195Q5TG92 126 aa7.3□□□□□ -1.24
VPS29-201ENST00000360579 LGALS3P17931 250 aaKnown RBP7.29□□□□□ -1.24
VPS29-201ENST00000360579 PLNP26678 52 aa7.29□□□□□ -1.24
VPS29-201ENST00000360579 H0Y8G0 127 aa7.28□□□□□ -1.24
VPS29-201ENST00000360579 TAL2Q16559 108 aa7.28□□□□□ -1.24
VPS29-201ENST00000360579 SOSTDC1Q6X4U4 206 aa7.28□□□□□ -1.24
VPS29-201ENST00000360579 HSBP1O75506 76 aa7.27□□□□□ -1.25
VPS29-201ENST00000360579 AKR1D1P51857 326 aa7.27□□□□□ -1.25
VPS29-201ENST00000360579 NPC2P61916 151 aa7.27□□□□□ -1.25
VPS29-201ENST00000360579 Q1RN00 199 aa7.27□□□□□ -1.25
VPS29-201ENST00000360579 C10orf91Q5T1B1 145 aa7.27□□□□□ -1.25
VPS29-201ENST00000360579 TEX49A0A1B0GTD5 131 aa7.26□□□□□ -1.25
VPS29-201ENST00000360579 OR13C6PQ8NH95 151 aa7.26□□□□□ -1.25
VPS29-201ENST00000360579 Q6Q795 121 aa7.25□□□□□ -1.25
VPS29-201ENST00000360579 SMIM29Q86T20 159 aa7.25□□□□□ -1.25
VPS29-201ENST00000360579 SPANXCQ9NY87 97 aa7.25□□□□□ -1.25
VPS29-201ENST00000360579 FCGBPQ9Y6R7 5405 aaPredicted RBP7.25□□□□□ -1.25
VPS29-201ENST00000360579 COX7BP24311 80 aa7.24□□□□□ -1.25
VPS29-201ENST00000360579 ELOF1P60002 83 aaKnown RBP7.24□□□□□ -1.25
VPS29-201ENST00000360579 ADAMTSL4-AS1Q5T5F5 129 aa7.24□□□□□ -1.25
VPS29-201ENST00000360579 DEFB105AQ8NG35 78 aa7.24□□□□□ -1.25
VPS29-201ENST00000360579 A0A0J9YXY3 114 aa7.23□□□□□ -1.25
VPS29-201ENST00000360579 DPM2O94777 84 aa7.23□□□□□ -1.25
VPS29-201ENST00000360579 SPANXDQ9BXN6 97 aa7.23□□□□□ -1.25
VPS29-201ENST00000360579 LEPROTL1O95214 131 aa7.22□□□□□ -1.25
VPS29-201ENST00000360579 TCL1BO95988 128 aa7.22□□□□□ -1.25
VPS29-201ENST00000360579 IGKCP01834 107 aa7.2□□□□□ -1.26
VPS29-201ENST00000360579 C6orf99Q4VX62 202 aa7.2□□□□□ -1.26
VPS29-201ENST00000360579 ATP11AUNQ6ZP68 121 aa7.2□□□□□ -1.26
VPS29-201ENST00000360579 LINC00308Q8TCZ7 52 aa7.19□□□□□ -1.26
VPS29-201ENST00000360579 TRBV7-6A0A0J9YX20 115 aa7.18□□□□□ -1.26
VPS29-201ENST00000360579 LINC00518Q8N0U6 118 aa7.18□□□□□ -1.26
VPS29-201ENST00000360579 KRTAP9-8Q9BYQ0 159 aa7.18□□□□□ -1.26
VPS29-201ENST00000360579 HSPB8Q9UJY1 196 aa7.18□□□□□ -1.26
VPS29-201ENST00000360579 PMCHL2Q9BQD1 86 aa7.17□□□□□ -1.26
VPS29-201ENST00000360579 IGLV5-48A0A075B6I7 105 aa7.16□□□□□ -1.26
VPS29-201ENST00000360579 E9PLD3 99 aa7.16□□□□□ -1.26
VPS29-201ENST00000360579 TIMM17BO60830 172 aa7.16□□□□□ -1.26
VPS29-201ENST00000360579 Q75L30 129 aa7.16□□□□□ -1.26
VPS29-201ENST00000360579 A0A0G2JQZ4 141 aa7.15□□□□□ -1.26
VPS29-201ENST00000360579 C20orf202A1L168 122 aa7.15□□□□□ -1.26
VPS29-201ENST00000360579 SNAPINO95295 136 aa7.15□□□□□ -1.26
VPS29-201ENST00000360579 LITAFQ99732 161 aa7.15□□□□□ -1.26
VPS29-201ENST00000360579 SYNE2Q8WXH0 6885 aaKnown RBP7.14□□□□□ -1.27
VPS29-201ENST00000360579 A0A1B0GWB2 263 aa7.14□□□□□ -1.27
VPS29-201ENST00000360579 APOC3P02656 99 aa7.14□□□□□ -1.27
VPS29-201ENST00000360579 MACF1Q9UPN3 7388 aaKnown RBP7.14□□□□□ -1.27
VPS29-201ENST00000360579 NDUFA5Q16718 116 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms