RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 ACACBO00763 2458 aa5.06□□□□□ -1.6
SCN9A-201ENST00000303354 C4orf26Q17RF5 130 aa5.06□□□□□ -1.6
SCN9A-201ENST00000303354 TP53AIP1Q9HCN2 124 aa5.06□□□□□ -1.6
SCN9A-201ENST00000303354 VCANP13611 3396 aa5.05□□□□□ -1.6
SCN9A-201ENST00000303354 A8MWP4 228 aa5.05□□□□□ -1.6
SCN9A-201ENST00000303354 LINC00336Q6ZUF6 198 aa5.05□□□□□ -1.6
SCN9A-201ENST00000303354 UNC80Q8N2C7 3258 aa5.04□□□□□ -1.6
SCN9A-201ENST00000303354 LINC01600Q96MT4 127 aa5.04□□□□□ -1.6
SCN9A-201ENST00000303354 Q8N377 158 aa5.04□□□□□ -1.6
SCN9A-201ENST00000303354 IGLV5-45A0A087WSX0 123 aa5.04□□□□□ -1.6
SCN9A-201ENST00000303354 LINC00612Q8N6U2 182 aa5.04□□□□□ -1.6
SCN9A-201ENST00000303354 IGLV5-48A0A075B6I7 105 aa5.04□□□□□ -1.6
SCN9A-201ENST00000303354 Q6ZSA8 131 aa5.04□□□□□ -1.6
SCN9A-201ENST00000303354 C8orf17Q9NRJ1 99 aa5.03□□□□□ -1.6
SCN9A-201ENST00000303354 USP34Q70CQ2 3546 aa5.02□□□□□ -1.61
SCN9A-201ENST00000303354 C9orf163Q8N9P6 203 aa5.02□□□□□ -1.61
SCN9A-201ENST00000303354 FREM2Q5SZK8 3169 aa5.02□□□□□ -1.61
SCN9A-201ENST00000303354 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.02□□□□□ -1.61
SCN9A-201ENST00000303354 IGLV7-46A0A075B6I9 117 aa5.02□□□□□ -1.61
SCN9A-201ENST00000303354 LINC01546A6NGU7 62 aa5.02□□□□□ -1.61
SCN9A-201ENST00000303354 MYO15AQ9UKN7 3530 aa5.01□□□□□ -1.61
SCN9A-201ENST00000303354 C8orf87E5RJ46 101 aa5.01□□□□□ -1.61
SCN9A-201ENST00000303354 LAMA2P24043 3122 aaKnown RBP5.01□□□□□ -1.61
SCN9A-201ENST00000303354 COA5Q86WW8 74 aa5□□□□□ -1.61
SCN9A-201ENST00000303354 LITAFQ99732 161 aa5□□□□□ -1.61
SCN9A-201ENST00000303354 PRR15Q8IV56 129 aa4.99□□□□□ -1.61
SCN9A-201ENST00000303354 KCNQ1DNQ9H478 68 aa4.99□□□□□ -1.61
SCN9A-201ENST00000303354 A0A1B0GVX0 72 aa4.99□□□□□ -1.61
SCN9A-201ENST00000303354 A8MUN3 132 aa4.98□□□□□ -1.61
SCN9A-201ENST00000303354 RANBP2P49792 3224 aaKnown RBP4.97□□□□□ -1.61
SCN9A-201ENST00000303354 LOC110117498A0A087WWA1 95 aa4.97□□□□□ -1.61
SCN9A-201ENST00000303354 SPRR4Q96PI1 79 aa4.97□□□□□ -1.61
SCN9A-201ENST00000303354 PRR34Q9NV39 138 aa4.96□□□□□ -1.61
SCN9A-201ENST00000303354 LOC101927531A0A1B0GV80 90 aa4.96□□□□□ -1.62
SCN9A-201ENST00000303354 SPEGQ15772 3267 aa4.95□□□□□ -1.62
SCN9A-201ENST00000303354 DOPEY1Q5JWR5 2465 aa4.95□□□□□ -1.62
SCN9A-201ENST00000303354 A0A0C4DFX4 3053 aa4.94□□□□□ -1.62
SCN9A-201ENST00000303354 JMJD1CQ15652 2540 aa4.94□□□□□ -1.62
SCN9A-201ENST00000303354 EYSQ5T1H1 3165 aa4.94□□□□□ -1.62
SCN9A-201ENST00000303354 Q5VSD8 79 aa4.93□□□□□ -1.62
SCN9A-201ENST00000303354 CFAP54Q96N23 3096 aa4.93□□□□□ -1.62
SCN9A-201ENST00000303354 LRRK2Q5S007 2527 aa4.93□□□□□ -1.62
SCN9A-201ENST00000303354 SPTBN5Q9NRC6 3674 aaKnown RBP4.93□□□□□ -1.62
SCN9A-201ENST00000303354 MYO9AB2RTY4 2548 aa4.92□□□□□ -1.62
SCN9A-201ENST00000303354 CRIPTQ9P021 101 aa4.92□□□□□ -1.62
SCN9A-201ENST00000303354 COL6A3P12111 3177 aa4.92□□□□□ -1.62
SCN9A-201ENST00000303354 MIR22HGQ0VDD5 57 aa4.91□□□□□ -1.62
SCN9A-201ENST00000303354 CACNA1AO00555 2505 aa4.91□□□□□ -1.62
SCN9A-201ENST00000303354 PRO0461Q9UI25 63 aa4.91□□□□□ -1.62
SCN9A-201ENST00000303354 CAMK2N1Q7Z7J9 78 aa4.9□□□□□ -1.62
SCN9A-201ENST00000303354 TRIOO75962 3097 aa4.9□□□□□ -1.63
SCN9A-201ENST00000303354 VPS13AQ96RL7 3174 aa4.89□□□□□ -1.63
SCN9A-201ENST00000303354 A0A1W2PNM2 257 aa4.89□□□□□ -1.63
SCN9A-201ENST00000303354 KRTAP10-2P60368 255 aa4.88□□□□□ -1.63
SCN9A-201ENST00000303354 TLX1NBP0CAT3 122 aa4.88□□□□□ -1.63
SCN9A-201ENST00000303354 ZNF462Q96JM2 2506 aa4.88□□□□□ -1.63
SCN9A-201ENST00000303354 CHD9Q3L8U1 2897 aa4.87□□□□□ -1.63
SCN9A-201ENST00000303354 CNBPP62633 177 aaKnown RBP4.87□□□□□ -1.63
SCN9A-201ENST00000303354 UQCR11O14957 56 aa4.87□□□□□ -1.63
SCN9A-201ENST00000303354 WDFY4Q6ZS81 3184 aa4.87□□□□□ -1.63
SCN9A-201ENST00000303354 TLN1Q9Y490 2541 aaKnown RBP4.87□□□□□ -1.63
SCN9A-201ENST00000303354 FN1P02751 2386 aaKnown RBP4.86□□□□□ -1.63
SCN9A-201ENST00000303354 H3BPC8 53 aa4.86□□□□□ -1.63
SCN9A-201ENST00000303354 KRTAP10-1P60331 282 aa4.85□□□□□ -1.63
SCN9A-201ENST00000303354 C2CD3Q4AC94 2353 aa4.85□□□□□ -1.63
SCN9A-201ENST00000303354 FAM104AQ969W3 186 aa4.85□□□□□ -1.63
SCN9A-201ENST00000303354 CFAP47Q6ZTR5 3102 aa4.84□□□□□ -1.63
SCN9A-201ENST00000303354 ASPMQ8IZT6 3477 aa4.84□□□□□ -1.63
SCN9A-201ENST00000303354 ZNF292O60281 2723 aa4.84□□□□□ -1.64
SCN9A-201ENST00000303354 ANKRD11Q6UB99 2663 aaPredicted RBP4.83□□□□□ -1.64
SCN9A-201ENST00000303354 ABCA12Q86UK0 2595 aa4.83□□□□□ -1.64
SCN9A-201ENST00000303354 KLK9Q2XQG4 91 aa4.83□□□□□ -1.64
SCN9A-201ENST00000303354 CEP295Q9C0D2 2601 aa4.82□□□□□ -1.64
SCN9A-201ENST00000303354 WIPF1O43516 503 aa4.82□□□□□ -1.64
SCN9A-201ENST00000303354 KRTAP1-5Q9BYS1 174 aa4.81□□□□□ -1.64
SCN9A-201ENST00000303354 A0A1B0GW54 56 aa4.81□□□□□ -1.64
SCN9A-201ENST00000303354 ZFYVE26Q68DK2 2539 aa4.81□□□□□ -1.64
SCN9A-201ENST00000303354 S4R3F8 94 aa4.81□□□□□ -1.64
SCN9A-201ENST00000303354 WDFY3Q8IZQ1 3526 aa4.81□□□□□ -1.64
SCN9A-201ENST00000303354 DSPP15924 2871 aaKnown RBP4.8□□□□□ -1.64
SCN9A-201ENST00000303354 LCE6AA0A183 80 aa4.79□□□□□ -1.64
SCN9A-201ENST00000303354 Q8N9P0 234 aaPredicted RBP4.78□□□□□ -1.64
SCN9A-201ENST00000303354 CDC42SE1Q9NRR8 79 aa4.78□□□□□ -1.64
SCN9A-201ENST00000303354 Q8NDZ9 215 aa4.78□□□□□ -1.65
SCN9A-201ENST00000303354 MYO18BQ8IUG5 2567 aa4.77□□□□□ -1.65
SCN9A-201ENST00000303354 PRO0628Q9UI54 55 aa4.76□□□□□ -1.65
SCN9A-201ENST00000303354 POLQO75417 2590 aa4.76□□□□□ -1.65
SCN9A-201ENST00000303354 HRES1P13985 223 aa4.76□□□□□ -1.65
SCN9A-201ENST00000303354 PLAC8Q9NZF1 115 aa4.75□□□□□ -1.65
SCN9A-201ENST00000303354 HTTP42858 3142 aa4.75□□□□□ -1.65
SCN9A-201ENST00000303354 CHD7Q9P2D1 2997 aa4.75□□□□□ -1.65
SCN9A-201ENST00000303354 PANO1I0J062 215 aa4.75□□□□□ -1.65
SCN9A-201ENST00000303354 CD164Q04900 197 aa4.74□□□□□ -1.65
SCN9A-201ENST00000303354 FASNP49327 2511 aaKnown RBP4.73□□□□□ -1.65
SCN9A-201ENST00000303354 ANKRD17O75179 2603 aaKnown RBP4.73□□□□□ -1.65
SCN9A-201ENST00000303354 SPINK7P58062 85 aa4.73□□□□□ -1.65
SCN9A-201ENST00000303354 ZCCHC13Q8WW36 166 aaKnown RBP4.72□□□□□ -1.65
SCN9A-201ENST00000303354 PIEZO1Q92508 2521 aa4.72□□□□□ -1.65
SCN9A-201ENST00000303354 ACANP16112 2415 aa4.72□□□□□ -1.65
SCN9A-201ENST00000303354 CSAG1Q6PB30 78 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms