RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 LINC00313P59037 77 aa4.39□□□□□ -1.71
VPS35-201ENST00000299138 ELOF1P60002 83 aaKnown RBP4.39□□□□□ -1.71
VPS35-201ENST00000299138 IGLV6-57P01721 117 aa4.39□□□□□ -1.71
VPS35-201ENST00000299138 MOBPQ13875 183 aa4.39□□□□□ -1.71
VPS35-201ENST00000299138 C8orf17Q9NRJ1 99 aa4.39□□□□□ -1.71
VPS35-201ENST00000299138 IGLV5-52A0A0A0MRZ9 124 aa4.38□□□□□ -1.71
VPS35-201ENST00000299138 SPTBN4Q9H254 2564 aa4.37□□□□□ -1.71
VPS35-201ENST00000299138 CHD8Q9HCK8 2581 aa4.37□□□□□ -1.71
VPS35-201ENST00000299138 H7BZZ5 65 aa4.37□□□□□ -1.71
VPS35-201ENST00000299138 KRTAP10-9P60411 292 aa4.37□□□□□ -1.71
VPS35-201ENST00000299138 DMXL1Q9Y485 3027 aa4.37□□□□□ -1.71
VPS35-201ENST00000299138 AVPP01185 164 aa4.37□□□□□ -1.71
VPS35-201ENST00000299138 PRAC1Q96KF2 57 aa4.36□□□□□ -1.71
VPS35-201ENST00000299138 Q96NJ1 140 aa4.36□□□□□ -1.71
VPS35-201ENST00000299138 C22orf24Q9Y442 160 aa4.35□□□□□ -1.71
VPS35-201ENST00000299138 Q6ZRU5 148 aa4.35□□□□□ -1.71
VPS35-201ENST00000299138 SPG11Q96JI7 2443 aa4.34□□□□□ -1.71
VPS35-201ENST00000299138 ZNF292O60281 2723 aa4.34□□□□□ -1.71
VPS35-201ENST00000299138 A0A096LNT2 108 aa4.34□□□□□ -1.71
VPS35-201ENST00000299138 K7EQZ3 153 aa4.34□□□□□ -1.72
VPS35-201ENST00000299138 C18orf65Q6ZTR6 163 aa4.34□□□□□ -1.72
VPS35-201ENST00000299138 LINC00476Q8WZB0 136 aa4.34□□□□□ -1.72
VPS35-201ENST00000299138 PRR34Q9NV39 138 aa4.34□□□□□ -1.72
VPS35-201ENST00000299138 Q1T7F1 81 aa4.33□□□□□ -1.72
VPS35-201ENST00000299138 PKD1L2Q7Z442 2459 aa4.33□□□□□ -1.72
VPS35-201ENST00000299138 NAV2Q8IVL1 2488 aa4.33□□□□□ -1.72
VPS35-201ENST00000299138 DOPEY1Q5JWR5 2465 aa4.32□□□□□ -1.72
VPS35-201ENST00000299138 SMG1Q96Q15 3661 aaKnown RBP4.32□□□□□ -1.72
VPS35-201ENST00000299138 EPG5Q9HCE0 2579 aa4.31□□□□□ -1.72
VPS35-201ENST00000299138 ST20-AS1Q8NBB2 130 aa4.31□□□□□ -1.72
VPS35-201ENST00000299138 IGLV5-48A0A075B6I7 105 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 LINC00483Q53H64 154 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 Q8NBF4 154 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 Q5XG85 94 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 HIVEP3Q5T1R4 2406 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 CSAG1Q6PB30 78 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 SPANXA2-OT1Q8N9U9 137 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 ZNF462Q96JM2 2506 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 CSPG4Q6UVK1 2322 aa4.3□□□□□ -1.72
VPS35-201ENST00000299138 MRPL34Q9BQ48 92 aaKnown RBP4.29□□□□□ -1.72
VPS35-201ENST00000299138 CHTF8P0CG12 524 aa4.29□□□□□ -1.72
VPS35-201ENST00000299138 A8MWP4 228 aa4.29□□□□□ -1.72
VPS35-201ENST00000299138 KCNQ1DNQ9H478 68 aa4.29□□□□□ -1.72
VPS35-201ENST00000299138 TLX1NBP0CAT3 122 aa4.29□□□□□ -1.72
VPS35-201ENST00000299138 C19orf73Q9NVV2 129 aa4.29□□□□□ -1.72
VPS35-201ENST00000299138 IGLV5-37A0A075B6J1 123 aa4.29□□□□□ -1.72
VPS35-201ENST00000299138 KRTAP16-1A8MUX0 517 aa4.28□□□□□ -1.72
VPS35-201ENST00000299138 ZZEF1O43149 2961 aa4.28□□□□□ -1.72
VPS35-201ENST00000299138 MYO18BQ8IUG5 2567 aa4.28□□□□□ -1.72
VPS35-201ENST00000299138 C2CD3Q4AC94 2353 aa4.27□□□□□ -1.73
VPS35-201ENST00000299138 INAFM1C9JVW0 142 aa4.27□□□□□ -1.73
VPS35-201ENST00000299138 MYO9AB2RTY4 2548 aa4.27□□□□□ -1.73
VPS35-201ENST00000299138 OCR1Q9BZK8 76 aa4.27□□□□□ -1.73
VPS35-201ENST00000299138 GIG44P09565 113 aaPredicted RBP4.27□□□□□ -1.73
VPS35-201ENST00000299138 DSCR10P59022 87 aa4.26□□□□□ -1.73
VPS35-201ENST00000299138 LCE6AA0A183 80 aa4.26□□□□□ -1.73
VPS35-201ENST00000299138 SPINK7P58062 85 aa4.26□□□□□ -1.73
VPS35-201ENST00000299138 PHF5AQ7RTV0 110 aaKnown RBP4.26□□□□□ -1.73
VPS35-201ENST00000299138 PRRC2CQ9Y520 2896 aaKnown RBP4.25□□□□□ -1.73
VPS35-201ENST00000299138 ZFYVE26Q68DK2 2539 aa4.25□□□□□ -1.73
VPS35-201ENST00000299138 FREM2Q5SZK8 3169 aa4.25□□□□□ -1.73
VPS35-201ENST00000299138 C9orf163Q8N9P6 203 aa4.25□□□□□ -1.73
VPS35-201ENST00000299138 TYMSOSQ8TAI1 123 aa4.25□□□□□ -1.73
VPS35-201ENST00000299138 COX6B2Q6YFQ2 88 aa4.24□□□□□ -1.73
VPS35-201ENST00000299138 SPRR4Q96PI1 79 aa4.24□□□□□ -1.73
VPS35-201ENST00000299138 AKAP13Q12802 2813 aa4.24□□□□□ -1.73
VPS35-201ENST00000299138 Q6ZRX8 168 aa4.24□□□□□ -1.73
VPS35-201ENST00000299138 C9orf92A6NGG3 77 aa4.24□□□□□ -1.73
VPS35-201ENST00000299138 LRRK2Q5S007 2527 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 RELNP78509 3460 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 NOTCH2Q04721 2471 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 CELSR3Q9NYQ7 3312 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 Q8N1X5 172 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 HIVEP2P31629 2446 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 DMAC1Q96GE9 116 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 CCDC168Q8NDH2 2452 aa4.23□□□□□ -1.73
VPS35-201ENST00000299138 SMR3AQ99954 134 aa4.22□□□□□ -1.73
VPS35-201ENST00000299138 NBEAQ8NFP9 2946 aa4.22□□□□□ -1.73
VPS35-201ENST00000299138 Q6ZRP5 223 aa4.22□□□□□ -1.73
VPS35-201ENST00000299138 RTL8CO15255 209 aa4.22□□□□□ -1.73
VPS35-201ENST00000299138 PTPN13Q12923 2485 aa4.22□□□□□ -1.73
VPS35-201ENST00000299138 CAMK2N1Q7Z7J9 78 aa4.21□□□□□ -1.74
VPS35-201ENST00000299138 LINC00588Q9Y4M8 146 aa4.21□□□□□ -1.74
VPS35-201ENST00000299138 PRR26Q8N8Z3 221 aa4.2□□□□□ -1.74
VPS35-201ENST00000299138 SPRR1AP35321 89 aa4.2□□□□□ -1.74
VPS35-201ENST00000299138 FAM229BQ4G0N7 80 aa4.2□□□□□ -1.74
VPS35-201ENST00000299138 A0A0G2JQZ4 141 aa4.19□□□□□ -1.74
VPS35-201ENST00000299138 A0A1W2PNN7 141 aa4.19□□□□□ -1.74
VPS35-201ENST00000299138 A0A087X002 238 aa4.19□□□□□ -1.74
VPS35-201ENST00000299138 FP248Q71RG6 208 aaPredicted RBP4.19□□□□□ -1.74
VPS35-201ENST00000299138 USP9YO00507 2555 aaPredicted RBP4.19□□□□□ -1.74
VPS35-201ENST00000299138 USP9XQ93008 2570 aaPredicted RBP4.19□□□□□ -1.74
VPS35-201ENST00000299138 BSNQ9UPA5 3926 aa4.19□□□□□ -1.74
VPS35-201ENST00000299138 Q8NAQ8 132 aa4.19□□□□□ -1.74
VPS35-201ENST00000299138 FRYQ5TBA9 3013 aa4.19□□□□□ -1.74
VPS35-201ENST00000299138 Q75L30 129 aa4.18□□□□□ -1.74
VPS35-201ENST00000299138 ZCCHC13Q8WW36 166 aaKnown RBP4.18□□□□□ -1.74
VPS35-201ENST00000299138 OXTP01178 125 aa4.17□□□□□ -1.74
VPS35-201ENST00000299138 KRTAP1-3Q8IUG1 177 aa4.17□□□□□ -1.74
VPS35-201ENST00000299138 MGAQ8IWI9 3026 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms