RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SERP1Q9Y6X1 66 aa8.72□□□□□ -1.01
LDLR-201ENST00000252444 CDIP1Q9H305 208 aa8.72□□□□□ -1.01
LDLR-201ENST00000252444 K7ERS5 55 aa8.72□□□□□ -1.01
LDLR-201ENST00000252444 LINC00208Q96KT6 92 aa8.72□□□□□ -1.01
LDLR-201ENST00000252444 Q8N377 158 aa8.71□□□□□ -1.02
LDLR-201ENST00000252444 IGFL1Q6UW32 110 aa8.7□□□□□ -1.02
LDLR-201ENST00000252444 LOC101927531A0A1B0GV80 90 aa8.7□□□□□ -1.02
LDLR-201ENST00000252444 TMEM254Q8TBM7 123 aa8.7□□□□□ -1.02
LDLR-201ENST00000252444 J3QL48 77 aa8.7□□□□□ -1.02
LDLR-201ENST00000252444 SPRR1AP35321 89 aa8.69□□□□□ -1.02
LDLR-201ENST00000252444 ITPR3Q14573 2671 aa8.69□□□□□ -1.02
LDLR-201ENST00000252444 TNP2Q05952 138 aa8.69□□□□□ -1.02
LDLR-201ENST00000252444 KRTAP26-1Q6PEX3 210 aa8.67□□□□□ -1.02
LDLR-201ENST00000252444 OBSCN-AS1Q96MR7 158 aa8.67□□□□□ -1.02
LDLR-201ENST00000252444 SPRR1BP22528 89 aa8.66□□□□□ -1.02
LDLR-201ENST00000252444 MRPL34Q9BQ48 92 aaKnown RBP8.65□□□□□ -1.02
LDLR-201ENST00000252444 UTRNP46939 3433 aa8.65□□□□□ -1.02
LDLR-201ENST00000252444 C1orf64Q8NEQ6 169 aa8.65□□□□□ -1.03
LDLR-201ENST00000252444 Q6ZR54 194 aa8.64□□□□□ -1.03
LDLR-201ENST00000252444 IGSF10Q6WRI0 2623 aa8.64□□□□□ -1.03
LDLR-201ENST00000252444 TRAV22A0A0B4J277 110 aa8.63□□□□□ -1.03
LDLR-201ENST00000252444 A0A1B0GVX0 72 aa8.63□□□□□ -1.03
LDLR-201ENST00000252444 TNRC18O15417 2968 aaPredicted RBP8.63□□□□□ -1.03
LDLR-201ENST00000252444 ATP11AUNQ6ZP68 121 aa8.63□□□□□ -1.03
LDLR-201ENST00000252444 SMIM29Q86T20 159 aa8.63□□□□□ -1.03
LDLR-201ENST00000252444 PRR15Q8IV56 129 aa8.63□□□□□ -1.03
LDLR-201ENST00000252444 A0A087WVE0 104 aa8.62□□□□□ -1.03
LDLR-201ENST00000252444 SMIM26A0A096LP01 95 aa8.62□□□□□ -1.03
LDLR-201ENST00000252444 SNURFQ9Y675 71 aa8.62□□□□□ -1.03
LDLR-201ENST00000252444 CEP350Q5VT06 3117 aa8.62□□□□□ -1.03
LDLR-201ENST00000252444 SETD2Q9BYW2 2564 aaPredicted RBP8.6□□□□□ -1.03
LDLR-201ENST00000252444 EIF4EBP3O60516 100 aaPredicted RBP8.6□□□□□ -1.03
LDLR-201ENST00000252444 IGLV8-61A0A075B6I0 122 aa8.6□□□□□ -1.03
LDLR-201ENST00000252444 C8orf17Q9NRJ1 99 aa8.59□□□□□ -1.03
LDLR-201ENST00000252444 ACYP2P14621 99 aa8.59□□□□□ -1.03
LDLR-201ENST00000252444 KMT2BQ9UMN6 2715 aaPredicted RBP8.59□□□□□ -1.03
LDLR-201ENST00000252444 AKAP13Q12802 2813 aa8.58□□□□□ -1.04
LDLR-201ENST00000252444 DEFB116Q30KQ4 102 aa8.56□□□□□ -1.04
LDLR-201ENST00000252444 CCDC179H3BU77 68 aa8.55□□□□□ -1.04
LDLR-201ENST00000252444 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.55□□□□□ -1.04
LDLR-201ENST00000252444 Q96NJ1 140 aa8.54□□□□□ -1.04
LDLR-201ENST00000252444 UNC79Q9P2D8 2635 aa8.54□□□□□ -1.04
LDLR-201ENST00000252444 CFAP46Q8IYW2 2715 aa8.52□□□□□ -1.04
LDLR-201ENST00000252444 C5orf42Q9H799 3197 aa8.5□□□□□ -1.05
LDLR-201ENST00000252444 C7orf65Q6ZTY9 151 aa8.49□□□□□ -1.05
LDLR-201ENST00000252444 KRTAP1-5Q9BYS1 174 aa8.49□□□□□ -1.05
LDLR-201ENST00000252444 IGKV2D-30A0A075B6S6 120 aa8.49□□□□□ -1.05
LDLR-201ENST00000252444 A0A1W2PNM2 257 aa8.49□□□□□ -1.05
LDLR-201ENST00000252444 IGKV2-30P06310 120 aa8.49□□□□□ -1.05
LDLR-201ENST00000252444 K7EQZ3 153 aa8.48□□□□□ -1.05
LDLR-201ENST00000252444 LINC00483Q53H64 154 aa8.48□□□□□ -1.05
LDLR-201ENST00000252444 FLNBO75369 2602 aaKnown RBP8.47□□□□□ -1.05
LDLR-201ENST00000252444 PCOTHQ58A44 107 aa8.46□□□□□ -1.06
LDLR-201ENST00000252444 PRR4Q16378 134 aa8.45□□□□□ -1.06
LDLR-201ENST00000252444 RPS28P62857 69 aaKnown RBP8.44□□□□□ -1.06
LDLR-201ENST00000252444 SMR3BP02814 79 aaPredicted RBP8.43□□□□□ -1.06
LDLR-201ENST00000252444 RANBP2P49792 3224 aaKnown RBP8.42□□□□□ -1.06
LDLR-201ENST00000252444 RPS29P62273 56 aaKnown RBP8.42□□□□□ -1.06
LDLR-201ENST00000252444 Q6ZRN7 208 aaPredicted RBP8.41□□□□□ -1.06
LDLR-201ENST00000252444 C1orf195Q5TG92 126 aa8.4□□□□□ -1.06
LDLR-201ENST00000252444 FP248Q71RG6 208 aaPredicted RBP8.39□□□□□ -1.07
LDLR-201ENST00000252444 RETNLBQ9BQ08 111 aa8.39□□□□□ -1.07
LDLR-201ENST00000252444 DSCR10P59022 87 aa8.38□□□□□ -1.07
LDLR-201ENST00000252444 KLKP1Q107X0 134 aa8.38□□□□□ -1.07
LDLR-201ENST00000252444 SPANXA2-OT1Q8N9U9 137 aa8.38□□□□□ -1.07
LDLR-201ENST00000252444 RBM12B-AS1Q9P1G2 102 aa8.37□□□□□ -1.07
LDLR-201ENST00000252444 MPLKIPQ8TAP9 179 aa8.37□□□□□ -1.07
LDLR-201ENST00000252444 A6NED7 52 aa8.36□□□□□ -1.07
LDLR-201ENST00000252444 KRTAP10-1P60331 282 aa8.35□□□□□ -1.07
LDLR-201ENST00000252444 A8MUN3 132 aa8.34□□□□□ -1.07
LDLR-201ENST00000252444 KRTAP4-16G5E9R7 235 aaPredicted RBP8.34□□□□□ -1.07
LDLR-201ENST00000252444 BAHCC1Q9P281 2608 aa8.33□□□□□ -1.08
LDLR-201ENST00000252444 OXTP01178 125 aa8.33□□□□□ -1.08
LDLR-201ENST00000252444 ATRQ13535 2644 aa8.33□□□□□ -1.08
LDLR-201ENST00000252444 UBR5O95071 2799 aaPredicted RBP8.32□□□□□ -1.08
LDLR-201ENST00000252444 ASB16-AS1Q495Z4 193 aa8.31□□□□□ -1.08
LDLR-201ENST00000252444 IGLV7-46A0A075B6I9 117 aa8.31□□□□□ -1.08
LDLR-201ENST00000252444 Q5VSD8 79 aa8.31□□□□□ -1.08
LDLR-201ENST00000252444 BRK1Q8WUW1 75 aa8.3□□□□□ -1.08
LDLR-201ENST00000252444 Q8NDZ9 215 aa8.3□□□□□ -1.08
LDLR-201ENST00000252444 PRRC2CQ9Y520 2896 aaKnown RBP8.29□□□□□ -1.08
LDLR-201ENST00000252444 PRR26Q8N8Z3 221 aa8.28□□□□□ -1.08
LDLR-201ENST00000252444 A0A1B0GU69 56 aa8.28□□□□□ -1.08
LDLR-201ENST00000252444 KRTAP10-2P60368 255 aa8.28□□□□□ -1.08
LDLR-201ENST00000252444 ANAPC11Q9NYG5 84 aa8.27□□□□□ -1.09
LDLR-201ENST00000252444 SVIPQ8NHG7 77 aa8.25□□□□□ -1.09
LDLR-201ENST00000252444 MAST4O15021 2626 aa8.24□□□□□ -1.09
LDLR-201ENST00000252444 MGAQ8IWI9 3026 aa8.24□□□□□ -1.09
LDLR-201ENST00000252444 Q5XG85 94 aa8.24□□□□□ -1.09
LDLR-201ENST00000252444 LINC00472Q9H8W2 130 aa8.24□□□□□ -1.09
LDLR-201ENST00000252444 A0A0U1RQV1 116 aa8.23□□□□□ -1.09
LDLR-201ENST00000252444 CYP4F30PQ9H0H9 118 aa8.22□□□□□ -1.09
LDLR-201ENST00000252444 COX6B2Q6YFQ2 88 aa8.21□□□□□ -1.1
LDLR-201ENST00000252444 SEC61BP60468 96 aaKnown RBP8.21□□□□□ -1.1
LDLR-201ENST00000252444 C9orf92A6NGG3 77 aa8.2□□□□□ -1.1
LDLR-201ENST00000252444 MMP24-AS1A0A0U1RRL7 71 aa8.19□□□□□ -1.1
LDLR-201ENST00000252444 ZCCHC13Q8WW36 166 aaKnown RBP8.19□□□□□ -1.1
LDLR-201ENST00000252444 OCR1Q9BZK8 76 aa8.19□□□□□ -1.1
LDLR-201ENST00000252444 Q6ZSA8 131 aa8.18□□□□□ -1.1
LDLR-201ENST00000252444 COA5Q86WW8 74 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms