RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 A0A096LNJ9 63 aa6.15□□□□□ -1.42
SCN1A-222ENST00000642141 URB1-AS1Q96HZ7 61 aa6.15□□□□□ -1.42
SCN1A-222ENST00000642141 IGLV1-50A0A075B6I6 118 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 LINC01549A6NIU2 74 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 H3BRM9 83 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 ATP5LO75964 103 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 LINC00614P0C842 121 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 DDTP30046 118 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 C18orf32Q8TCD1 76 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 ZNF625Q96I27 306 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-222ENST00000642141 ANAPC11Q9NYG5 84 aa6.14□□□□□ -1.43
SCN1A-222ENST00000642141 NUPR1O60356 82 aa6.13□□□□□ -1.43
SCN1A-222ENST00000642141 BCE1O60756 84 aa6.13□□□□□ -1.43
SCN1A-222ENST00000642141 TSPAN13O95857 204 aa6.13□□□□□ -1.43
SCN1A-222ENST00000642141 NKAPP1Q8N9T2 125 aa6.13□□□□□ -1.43
SCN1A-222ENST00000642141 TP73-AS1Q9UF72 201 aa6.13□□□□□ -1.43
SCN1A-222ENST00000642141 IGKV2-28A0A075B6P5 120 aa6.12□□□□□ -1.43
SCN1A-222ENST00000642141 IGKV2D-28P01615 120 aa6.12□□□□□ -1.43
SCN1A-222ENST00000642141 IGLC3P0DOY3 106 aa6.12□□□□□ -1.43
SCN1A-222ENST00000642141 ZNF22P17026 224 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-222ENST00000642141 RPL28P46779 137 aaKnown RBP6.12□□□□□ -1.43
SCN1A-222ENST00000642141 PRR4Q16378 134 aa6.12□□□□□ -1.43
SCN1A-222ENST00000642141 BAGE3Q86Y29 109 aa6.12□□□□□ -1.43
SCN1A-222ENST00000642141 IGLV5-39A0A0G2JS06 123 aa6.11□□□□□ -1.43
SCN1A-222ENST00000642141 HBDP02042 147 aa6.11□□□□□ -1.43
SCN1A-222ENST00000642141 RPL13AP40429 203 aaKnown RBP6.11□□□□□ -1.43
SCN1A-222ENST00000642141 TMEM170BQ5T4T1 132 aa6.11□□□□□ -1.43
SCN1A-222ENST00000642141 A0A087X002 238 aa6.1□□□□□ -1.43
SCN1A-222ENST00000642141 C20orf202A1L168 122 aa6.1□□□□□ -1.43
SCN1A-222ENST00000642141 C11orf86A6NJI1 115 aa6.1□□□□□ -1.43
SCN1A-222ENST00000642141 UBE2AP49459 152 aa6.1□□□□□ -1.43
SCN1A-222ENST00000642141 LCE2CQ5TA81 110 aa6.1□□□□□ -1.43
SCN1A-222ENST00000642141 SND1-IT1Q9HBX3 110 aa6.1□□□□□ -1.43
SCN1A-222ENST00000642141 A0A0U1RRA0 63 aa6.09□□□□□ -1.43
SCN1A-222ENST00000642141 TMEM238C9JI98 176 aa6.09□□□□□ -1.43
SCN1A-222ENST00000642141 C14orf144Q96I85 54 aa6.09□□□□□ -1.43
SCN1A-222ENST00000642141 ERG28Q9UKR5 140 aa6.09□□□□□ -1.43
SCN1A-222ENST00000642141 IGLV5-37A0A075B6J1 123 aa6.08□□□□□ -1.44
SCN1A-222ENST00000642141 SCGB1D1O95968 90 aa6.08□□□□□ -1.44
SCN1A-222ENST00000642141 PRLHP81277 87 aa6.08□□□□□ -1.44
SCN1A-222ENST00000642141 Q8NDZ9 215 aa6.08□□□□□ -1.44
SCN1A-222ENST00000642141 CHTOPQ9Y3Y2 248 aaKnown RBP6.08□□□□□ -1.44
SCN1A-222ENST00000642141 CRYGAP11844 174 aa6.07□□□□□ -1.44
SCN1A-222ENST00000642141 LINC00158P58513 81 aa6.07□□□□□ -1.44
SCN1A-222ENST00000642141 TYMSOSQ8TAI1 123 aa6.07□□□□□ -1.44
SCN1A-222ENST00000642141 M0R143 59 aa6.06□□□□□ -1.44
SCN1A-222ENST00000642141 VPREB1P12018 145 aa6.06□□□□□ -1.44
SCN1A-222ENST00000642141 FAM19A1Q7Z5A9 133 aa6.06□□□□□ -1.44
SCN1A-222ENST00000642141 KRTAP13-1Q8IUC0 172 aa6.06□□□□□ -1.44
SCN1A-222ENST00000642141 CHCHD1Q96BP2 118 aaKnown RBP6.06□□□□□ -1.44
SCN1A-222ENST00000642141 MIEN1Q9BRT3 115 aa6.06□□□□□ -1.44
SCN1A-222ENST00000642141 H0Y8G0 127 aa6.05□□□□□ -1.44
SCN1A-222ENST00000642141 KRTAP13-2Q52LG2 175 aa6.05□□□□□ -1.44
SCN1A-222ENST00000642141 FAM19A2Q8N3H0 131 aa6.05□□□□□ -1.44
SCN1A-222ENST00000642141 IFI27L1Q96BM0 104 aa6.05□□□□□ -1.44
SCN1A-222ENST00000642141 VAMP8Q9BV40 100 aa6.05□□□□□ -1.44
SCN1A-222ENST00000642141 TMEM126AQ9H061 195 aa6.05□□□□□ -1.44
SCN1A-222ENST00000642141 SERF1AO75920 110 aa6.04□□□□□ -1.44
SCN1A-222ENST00000642141 RPL24P83731 157 aaKnown RBP6.04□□□□□ -1.44
SCN1A-222ENST00000642141 COX17Q14061 63 aa6.04□□□□□ -1.44
SCN1A-222ENST00000642141 TMEM223A0PJW6 202 aa6.03□□□□□ -1.44
SCN1A-222ENST00000642141 M0R378 163 aa6.03□□□□□ -1.44
SCN1A-222ENST00000642141 SMIM13P0DJ93 91 aa6.03□□□□□ -1.44
SCN1A-222ENST00000642141 RETNLBQ9BQ08 111 aa6.03□□□□□ -1.44
SCN1A-222ENST00000642141 HSBP1O75506 76 aa6.02□□□□□ -1.45
SCN1A-222ENST00000642141 IGKV2D-26A0A0A0MRZ7 120 aa6.01□□□□□ -1.45
SCN1A-222ENST00000642141 HIGD2AQ9BW72 106 aa6.01□□□□□ -1.45
SCN1A-222ENST00000642141 PRO1933Q9H354 126 aa6.01□□□□□ -1.45
SCN1A-222ENST00000642141 UQCR10Q9UDW1 63 aa6.01□□□□□ -1.45
SCN1A-222ENST00000642141 TRAV12-1A0A0B4J245 112 aa6□□□□□ -1.45
SCN1A-222ENST00000642141 NCR3O14931 201 aa6□□□□□ -1.45
SCN1A-222ENST00000642141 LINC00310P59036 64 aa6□□□□□ -1.45
SCN1A-222ENST00000642141 MEIG1Q5JSS6 88 aa6□□□□□ -1.45
SCN1A-222ENST00000642141 SFTA2Q6UW10 78 aa6□□□□□ -1.45
SCN1A-222ENST00000642141 BOD1L2Q8IYS8 172 aa6□□□□□ -1.45
SCN1A-222ENST00000642141 PLEKHB2Q96CS7 222 aa6□□□□□ -1.45
SCN1A-222ENST00000642141 FAM229BQ4G0N7 80 aa5.99□□□□□ -1.45
SCN1A-222ENST00000642141 C3orf22Q8N5N4 141 aa5.99□□□□□ -1.45
SCN1A-222ENST00000642141 MIR7-3HGQ8N6C7 128 aa5.99□□□□□ -1.45
SCN1A-222ENST00000642141 LINC00304Q8N9R0 145 aa5.99□□□□□ -1.45
SCN1A-222ENST00000642141 HSPB8Q9UJY1 196 aa5.99□□□□□ -1.45
SCN1A-222ENST00000642141 MUC2Q02817 5179 aa5.99□□□□□ -1.45
SCN1A-222ENST00000642141 KRTDAPP60985 99 aa5.98□□□□□ -1.45
SCN1A-222ENST00000642141 COL5A1-AS1Q5SY13 56 aa5.98□□□□□ -1.45
SCN1A-222ENST00000642141 PET117Q6UWS5 81 aa5.98□□□□□ -1.45
SCN1A-222ENST00000642141 DAND5Q8N907 189 aa5.98□□□□□ -1.45
SCN1A-222ENST00000642141 PMCHL2Q9BQD1 86 aa5.98□□□□□ -1.45
SCN1A-222ENST00000642141 NDUFA12Q9UI09 145 aa5.98□□□□□ -1.45
SCN1A-222ENST00000642141 C3orf79P0CE67 100 aa5.97□□□□□ -1.45
SCN1A-222ENST00000642141 TSPEAR-AS2P59090 65 aa5.97□□□□□ -1.45
SCN1A-222ENST00000642141 HSBP1L1C9JCN9 74 aa5.96□□□□□ -1.46
SCN1A-222ENST00000642141 LEPROTL1O95214 131 aa5.96□□□□□ -1.46
SCN1A-222ENST00000642141 SNHG12Q9BXW3 62 aa5.96□□□□□ -1.46
SCN1A-222ENST00000642141 MAP1LC3CQ9BXW4 147 aa5.96□□□□□ -1.46
SCN1A-222ENST00000642141 PPDPFQ9H3Y8 114 aa5.96□□□□□ -1.46
SCN1A-222ENST00000642141 MYMXA0A1B0GTQ4 84 aa5.95□□□□□ -1.46
SCN1A-222ENST00000642141 LORP23490 312 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-222ENST00000642141 HERV-K104P63124 156 aa5.95□□□□□ -1.46
SCN1A-222ENST00000642141 SPATA45Q537H7 98 aa5.95□□□□□ -1.46
SCN1A-222ENST00000642141 SPRR4Q96PI1 79 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 193.8 ms