RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 HIST1H4GQ99525 98 aa4.77□□□□□ -1.65
CIITA-214ENST00000636238 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.76□□□□□ -1.65
CIITA-214ENST00000636238 APOMO95445 188 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 SMIM13P0DJ93 91 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 NPC2P61916 151 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 SPAG11BQ08648 103 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 SRSF9Q13242 221 aaKnown RBP eCLIP4.76□□□□□ -1.65
CIITA-214ENST00000636238 MEIG1Q5JSS6 88 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 ADAMTSL4-AS1Q5T5F5 129 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 Q8IZM0 81 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 DAND5Q8N907 189 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 LITAFQ99732 161 aa4.76□□□□□ -1.65
CIITA-214ENST00000636238 LECT2O14960 151 aa4.75□□□□□ -1.65
CIITA-214ENST00000636238 FXYD2P54710 66 aa4.75□□□□□ -1.65
CIITA-214ENST00000636238 CKS1BP61024 79 aa4.75□□□□□ -1.65
CIITA-214ENST00000636238 C10orf25Q5T742 122 aa4.75□□□□□ -1.65
CIITA-214ENST00000636238 UNQ6190/PRO20217Q6UXQ8 127 aa4.75□□□□□ -1.65
CIITA-214ENST00000636238 CEND1Q8N111 149 aa4.75□□□□□ -1.65
CIITA-214ENST00000636238 C15orf56Q8N910 161 aa4.75□□□□□ -1.65
CIITA-214ENST00000636238 SPANXB1Q9NS25 103 aaPredicted RBP4.75□□□□□ -1.65
CIITA-214ENST00000636238 TMEM238C9JI98 176 aa4.74□□□□□ -1.65
CIITA-214ENST00000636238 PFN2P35080 140 aa4.74□□□□□ -1.65
CIITA-214ENST00000636238 PTTG1IPP53801 180 aa4.74□□□□□ -1.65
CIITA-214ENST00000636238 HERV-K104P63124 156 aa4.74□□□□□ -1.65
CIITA-214ENST00000636238 TAL2Q16559 108 aa4.74□□□□□ -1.65
CIITA-214ENST00000636238 C9orf116Q5BN46 136 aaPredicted RBP4.74□□□□□ -1.65
CIITA-214ENST00000636238 MUSTN1Q8IVN3 82 aa4.74□□□□□ -1.65
CIITA-214ENST00000636238 USP17L23D6RBM5 183 aa4.73□□□□□ -1.65
CIITA-214ENST00000636238 ZNF561-AS1K7EIQ3 104 aa4.73□□□□□ -1.65
CIITA-214ENST00000636238 EIF4EBP3O60516 100 aaPredicted RBP4.73□□□□□ -1.65
CIITA-214ENST00000636238 TIMM17BO60830 172 aa4.73□□□□□ -1.65
CIITA-214ENST00000636238 LINC00158P58513 81 aa4.73□□□□□ -1.65
CIITA-214ENST00000636238 CIRBPQ14011 172 aaKnown RBP4.73□□□□□ -1.65
CIITA-214ENST00000636238 SPANXDQ9BXN6 97 aa4.73□□□□□ -1.65
CIITA-214ENST00000636238 SPANXCQ9NY87 97 aa4.73□□□□□ -1.65
CIITA-214ENST00000636238 ERG28Q9UKR5 140 aa4.73□□□□□ -1.65
CIITA-214ENST00000636238 K7ERJ3 54 aa4.72□□□□□ -1.65
CIITA-214ENST00000636238 LINC01620Q4KN68 170 aa4.72□□□□□ -1.65
CIITA-214ENST00000636238 Q6ZVH6 145 aa4.72□□□□□ -1.65
CIITA-214ENST00000636238 MIR7-3HGQ8N6C7 128 aa4.72□□□□□ -1.65
CIITA-214ENST00000636238 CAMK2N2Q96S95 79 aa4.72□□□□□ -1.65
CIITA-214ENST00000636238 GVQW2A0A096LPI5 108 aaPredicted RBP4.71□□□□□ -1.66
CIITA-214ENST00000636238 A4D1N5 150 aa4.71□□□□□ -1.66
CIITA-214ENST00000636238 CXCL5P42830 114 aa4.71□□□□□ -1.66
CIITA-214ENST00000636238 SOSTDC1Q6X4U4 206 aa4.71□□□□□ -1.66
CIITA-214ENST00000636238 C9orf163Q8N9P6 203 aa4.71□□□□□ -1.66
CIITA-214ENST00000636238 LINC00308Q8TCZ7 52 aa4.71□□□□□ -1.66
CIITA-214ENST00000636238 RAB37Q96AX2 223 aa4.71□□□□□ -1.66
CIITA-214ENST00000636238 NHP2Q9NX24 153 aaKnown RBP4.71□□□□□ -1.66
CIITA-214ENST00000636238 C6orf48Q9UBA6 75 aa4.71□□□□□ -1.66
CIITA-214ENST00000636238 A6NDN8 102 aa4.7□□□□□ -1.66
CIITA-214ENST00000636238 SLPIP03973 132 aa4.7□□□□□ -1.66
CIITA-214ENST00000636238 COL5A1-AS1Q5SY13 56 aa4.7□□□□□ -1.66
CIITA-214ENST00000636238 SFTA2Q6UW10 78 aa4.7□□□□□ -1.66
CIITA-214ENST00000636238 C2orf48Q96LS8 159 aa4.7□□□□□ -1.66
CIITA-214ENST00000636238 LINC01600Q96MT4 127 aa4.7□□□□□ -1.66
CIITA-214ENST00000636238 TAX1BP3O14907 124 aa4.69□□□□□ -1.66
CIITA-214ENST00000636238 CFC1BP0CG36 223 aa4.69□□□□□ -1.66
CIITA-214ENST00000636238 CFC1P0CG37 223 aa4.69□□□□□ -1.66
CIITA-214ENST00000636238 IFITM1P13164 125 aa4.69□□□□□ -1.66
CIITA-214ENST00000636238 RPL24P83731 157 aaKnown RBP4.69□□□□□ -1.66
CIITA-214ENST00000636238 SYCNQ0VAF6 134 aa4.69□□□□□ -1.66
CIITA-214ENST00000636238 NAA38Q9BRA0 125 aaKnown RBP4.69□□□□□ -1.66
CIITA-214ENST00000636238 A0A1B0GV90 55 aa4.68□□□□□ -1.66
CIITA-214ENST00000636238 CNBPP62633 177 aaKnown RBP4.68□□□□□ -1.66
CIITA-214ENST00000636238 SDIM1Q6ZPB5 146 aa4.68□□□□□ -1.66
CIITA-214ENST00000636238 CARD19Q96LW7 228 aa4.68□□□□□ -1.66
CIITA-214ENST00000636238 TRBV30A0A0K0K1B3 111 aa4.67□□□□□ -1.66
CIITA-214ENST00000636238 F8WDY8 70 aa4.67□□□□□ -1.66
CIITA-214ENST00000636238 COX17Q14061 63 aa4.67□□□□□ -1.66
CIITA-214ENST00000636238 LBHQ53QV2 105 aaPredicted RBP4.67□□□□□ -1.66
CIITA-214ENST00000636238 C7orf33Q8WU49 177 aa4.67□□□□□ -1.66
CIITA-214ENST00000636238 SND1-IT1Q9HBX3 110 aa4.67□□□□□ -1.66
CIITA-214ENST00000636238 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.66□□□□□ -1.66
CIITA-214ENST00000636238 A0A1B0GWB2 263 aa4.66□□□□□ -1.66
CIITA-214ENST00000636238 H7C2G1 150 aa4.66□□□□□ -1.66
CIITA-214ENST00000636238 PRR3P79522 188 aaKnown RBP4.66□□□□□ -1.66
CIITA-214ENST00000636238 GAGE2EQ4V326 116 aa4.66□□□□□ -1.66
CIITA-214ENST00000636238 COPS9Q8WXC6 57 aa4.66□□□□□ -1.66
CIITA-214ENST00000636238 XAGE1AQ9HD64 81 aa4.66□□□□□ -1.66
CIITA-214ENST00000636238 GAGE2DQ9UEU5 116 aa4.66□□□□□ -1.66
CIITA-214ENST00000636238 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.66□□□□□ -1.66
CIITA-214ENST00000636238 A0A0B4J2C4 111 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 C9orf118A6NHY6 69 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 H3BUT2 72 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 RPL18AQ02543 176 aaKnown RBP4.65□□□□□ -1.67
CIITA-214ENST00000636238 RNF151Q2KHN1 245 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 REG3GQ6UW15 175 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 Q8NDZ9 215 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 PLAC8Q9NZF1 115 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 PRO1854Q9UHT4 67 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 FAT4Q6V0I7 4981 aa4.65□□□□□ -1.67
CIITA-214ENST00000636238 IGKV2-28A0A075B6P5 120 aa4.64□□□□□ -1.67
CIITA-214ENST00000636238 A0A0U1RQV1 116 aa4.64□□□□□ -1.67
CIITA-214ENST00000636238 NDUFC2-KCTD14E9PQ53 114 aa4.64□□□□□ -1.67
CIITA-214ENST00000636238 NCR3O14931 201 aa4.64□□□□□ -1.67
CIITA-214ENST00000636238 TSPAN13O95857 204 aa4.64□□□□□ -1.67
CIITA-214ENST00000636238 IGKV2D-28P01615 120 aa4.64□□□□□ -1.67
CIITA-214ENST00000636238 RPL13AP40429 203 aaKnown RBP4.64□□□□□ -1.67
CIITA-214ENST00000636238 KRTAP10-8P60410 259 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms