RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 ATP5LO75964 103 aa9.33□□□□□ -0.92
PNKP-222ENST00000629088 SPINK8P0C7L1 97 aa9.33□□□□□ -0.92
PNKP-222ENST00000629088 BAGE3Q86Y29 109 aa9.33□□□□□ -0.92
PNKP-222ENST00000629088 KRTAP13-1Q8IUC0 172 aa9.33□□□□□ -0.92
PNKP-222ENST00000629088 NKAPP1Q8N9T2 125 aa9.33□□□□□ -0.92
PNKP-222ENST00000629088 PYY3Q5JQD4 70 aa9.32□□□□□ -0.92
PNKP-222ENST00000629088 FA2HQ7L5A8 372 aa9.32□□□□□ -0.92
PNKP-222ENST00000629088 TYMSOSQ8TAI1 123 aa9.32□□□□□ -0.92
PNKP-222ENST00000629088 A0A0U1RQV1 116 aa9.31□□□□□ -0.92
PNKP-222ENST00000629088 HIST1H2BLQ99880 126 aa9.31□□□□□ -0.92
PNKP-222ENST00000629088 IGLV5-39A0A0G2JS06 123 aa9.3□□□□□ -0.92
PNKP-222ENST00000629088 GAGE10A6NGK3 116 aa9.3□□□□□ -0.92
PNKP-222ENST00000629088 IGLC3P0DOY3 106 aa9.3□□□□□ -0.92
PNKP-222ENST00000629088 FABP4P15090 132 aa9.3□□□□□ -0.92
PNKP-222ENST00000629088 FAM229BQ4G0N7 80 aa9.3□□□□□ -0.92
PNKP-222ENST00000629088 TSPAN13O95857 204 aa9.29□□□□□ -0.92
PNKP-222ENST00000629088 UBE2AP49459 152 aa9.29□□□□□ -0.92
PNKP-222ENST00000629088 SERF1AO75920 110 aa9.28□□□□□ -0.92
PNKP-222ENST00000629088 COX17Q14061 63 aa9.28□□□□□ -0.92
PNKP-222ENST00000629088 LINC00614P0C842 121 aa9.27□□□□□ -0.93
PNKP-222ENST00000629088 SFTA2Q6UW10 78 aa9.27□□□□□ -0.93
PNKP-222ENST00000629088 CHCHD1Q96BP2 118 aaKnown RBP9.27□□□□□ -0.93
PNKP-222ENST00000629088 LINC00310P59036 64 aa9.26□□□□□ -0.93
PNKP-222ENST00000629088 URB1-AS1Q96HZ7 61 aa9.26□□□□□ -0.93
PNKP-222ENST00000629088 ERG28Q9UKR5 140 aa9.26□□□□□ -0.93
PNKP-222ENST00000629088 IGKV2-28A0A075B6P5 120 aa9.25□□□□□ -0.93
PNKP-222ENST00000629088 A0A096LNJ9 63 aa9.25□□□□□ -0.93
PNKP-222ENST00000629088 IGKV2D-28P01615 120 aa9.25□□□□□ -0.93
PNKP-222ENST00000629088 VPREB1P12018 145 aa9.25□□□□□ -0.93
PNKP-222ENST00000629088 ZNF22P17026 224 aaPredicted RBP9.25□□□□□ -0.93
PNKP-222ENST00000629088 PFN2P35080 140 aa9.25□□□□□ -0.93
PNKP-222ENST00000629088 RPL24P83731 157 aaKnown RBP9.25□□□□□ -0.93
PNKP-222ENST00000629088 KRTAP13-2Q52LG2 175 aa9.25□□□□□ -0.93
PNKP-222ENST00000629088 SND1-IT1Q9HBX3 110 aa9.25□□□□□ -0.93
PNKP-222ENST00000629088 HSBP1O75506 76 aa9.24□□□□□ -0.93
PNKP-222ENST00000629088 LCE2AQ5TA79 106 aaPredicted RBP9.24□□□□□ -0.93
PNKP-222ENST00000629088 HBDP02042 147 aa9.23□□□□□ -0.93
PNKP-222ENST00000629088 LINC00304Q8N9R0 145 aa9.23□□□□□ -0.93
PNKP-222ENST00000629088 ANAPC11Q9NYG5 84 aa9.23□□□□□ -0.93
PNKP-222ENST00000629088 JOSD1Q15040 202 aaPredicted RBP9.22□□□□□ -0.93
PNKP-222ENST00000629088 TMEM126AQ9H061 195 aa9.22□□□□□ -0.93
PNKP-222ENST00000629088 IGKV2D-26A0A0A0MRZ7 120 aa9.21□□□□□ -0.94
PNKP-222ENST00000629088 PRLHP81277 87 aa9.21□□□□□ -0.94
PNKP-222ENST00000629088 PMCHL1Q16048 86 aa9.2□□□□□ -0.94
PNKP-222ENST00000629088 FAM19A1Q7Z5A9 133 aa9.2□□□□□ -0.94
PNKP-222ENST00000629088 MUC17Q685J3 4493 aa9.2□□□□□ -0.94
PNKP-222ENST00000629088 M0R378 163 aa9.19□□□□□ -0.94
PNKP-222ENST00000629088 FAM19A2Q8N3H0 131 aa9.19□□□□□ -0.94
PNKP-222ENST00000629088 ZNF625Q96I27 306 aaPredicted RBP9.19□□□□□ -0.94
PNKP-222ENST00000629088 C11orf86A6NJI1 115 aa9.18□□□□□ -0.94
PNKP-222ENST00000629088 TMEM238C9JI98 176 aa9.18□□□□□ -0.94
PNKP-222ENST00000629088 TMEM170BQ5T4T1 132 aa9.18□□□□□ -0.94
PNKP-222ENST00000629088 KRTAP9-6A0A140TA67 174 aa9.17□□□□□ -0.94
PNKP-222ENST00000629088 TPRXLQ17RH7 258 aa9.17□□□□□ -0.94
PNKP-222ENST00000629088 PLEKHB2Q96CS7 222 aa9.17□□□□□ -0.94
PNKP-222ENST00000629088 DDTP30046 118 aa9.16□□□□□ -0.94
PNKP-222ENST00000629088 C14orf144Q96I85 54 aa9.16□□□□□ -0.94
PNKP-222ENST00000629088 PRO1933Q9H354 126 aa9.16□□□□□ -0.94
PNKP-222ENST00000629088 TSTD3H0UI37 97 aa9.15□□□□□ -0.94
PNKP-222ENST00000629088 SCGB1D1O95968 90 aa9.15□□□□□ -0.94
PNKP-222ENST00000629088 Q8NDZ9 215 aa9.15□□□□□ -0.94
PNKP-222ENST00000629088 LEPROTL1O95214 131 aa9.14□□□□□ -0.95
PNKP-222ENST00000629088 RETNLBQ9BQ08 111 aa9.14□□□□□ -0.95
PNKP-222ENST00000629088 HSPB8Q9UJY1 196 aa9.14□□□□□ -0.95
PNKP-222ENST00000629088 CHTOPQ9Y3Y2 248 aaKnown RBP9.14□□□□□ -0.95
PNKP-222ENST00000629088 TRAV12-1A0A0B4J245 112 aa9.13□□□□□ -0.95
PNKP-222ENST00000629088 LINC00158P58513 81 aa9.13□□□□□ -0.95
PNKP-222ENST00000629088 KRTDAPP60985 99 aa9.13□□□□□ -0.95
PNKP-222ENST00000629088 TMEM223A0PJW6 202 aa9.12□□□□□ -0.95
PNKP-222ENST00000629088 SPAG11AQ6PDA7 123 aa9.12□□□□□ -0.95
PNKP-222ENST00000629088 HIGD2AQ9BW72 106 aa9.12□□□□□ -0.95
PNKP-222ENST00000629088 IGLV7-46A0A075B6I9 117 aa9.11□□□□□ -0.95
PNKP-222ENST00000629088 C3orf79P0CE67 100 aa9.11□□□□□ -0.95
PNKP-222ENST00000629088 IFI27L1Q96BM0 104 aa9.11□□□□□ -0.95
PNKP-222ENST00000629088 CDIP1Q9H305 208 aa9.11□□□□□ -0.95
PNKP-222ENST00000629088 ZNF706Q9Y5V0 76 aaPredicted RBP9.11□□□□□ -0.95
PNKP-222ENST00000629088 C3orf22Q8N5N4 141 aa9.1□□□□□ -0.95
PNKP-222ENST00000629088 SPRR4Q96PI1 79 aa9.1□□□□□ -0.95
PNKP-222ENST00000629088 MAP1LC3CQ9BXW4 147 aa9.1□□□□□ -0.95
PNKP-222ENST00000629088 PRYO14603 147 aa9.09□□□□□ -0.95
PNKP-222ENST00000629088 HERV-K104P63124 156 aa9.09□□□□□ -0.95
PNKP-222ENST00000629088 C20orf202A1L168 122 aa9.08□□□□□ -0.96
PNKP-222ENST00000629088 PET117Q6UWS5 81 aa9.08□□□□□ -0.96
PNKP-222ENST00000629088 LINC00337Q8N6G1 96 aa9.08□□□□□ -0.96
PNKP-222ENST00000629088 SYS1-DBNDD2H3BUS1 97 aa9.07□□□□□ -0.96
PNKP-222ENST00000629088 SPRR1AP35321 89 aa9.07□□□□□ -0.96
PNKP-222ENST00000629088 A0A0U1RRA0 63 aa9.06□□□□□ -0.96
PNKP-222ENST00000629088 SMIM13P0DJ93 91 aa9.06□□□□□ -0.96
PNKP-222ENST00000629088 FP248Q71RG6 208 aaPredicted RBP9.06□□□□□ -0.96
PNKP-222ENST00000629088 BOD1L2Q8IYS8 172 aa9.06□□□□□ -0.96
PNKP-222ENST00000629088 KCNQ1DNQ9H478 68 aa9.06□□□□□ -0.96
PNKP-222ENST00000629088 A0A1B0GV90 55 aa9.05□□□□□ -0.96
PNKP-222ENST00000629088 H0Y8G0 127 aa9.05□□□□□ -0.96
PNKP-222ENST00000629088 MEIG1Q5JSS6 88 aa9.05□□□□□ -0.96
PNKP-222ENST00000629088 MIR7-3HGQ8N6C7 128 aa9.05□□□□□ -0.96
PNKP-222ENST00000629088 PPDPFQ9H3Y8 114 aa9.05□□□□□ -0.96
PNKP-222ENST00000629088 C4orf48Q5BLP8 95 aa9.04□□□□□ -0.96
PNKP-222ENST00000629088 VAMP8Q9BV40 100 aa9.04□□□□□ -0.96
PNKP-222ENST00000629088 KRTAP4-16G5E9R7 235 aaPredicted RBP9.03□□□□□ -0.96
PNKP-222ENST00000629088 MYMXA0A1B0GTQ4 84 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms