RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 MAST4O15021 2626 aa9.7□□□□□ -0.86
CIITA-213ENST00000618327 FAM19A5Q7Z5A7 132 aaPredicted RBP9.7□□□□□ -0.86
CIITA-213ENST00000618327 PRR15LQ9BU68 103 aa9.7□□□□□ -0.86
CIITA-213ENST00000618327 FLNCQ14315 2725 aa9.7□□□□□ -0.86
CIITA-213ENST00000618327 IGKV2-28A0A075B6P5 120 aa9.7□□□□□ -0.86
CIITA-213ENST00000618327 A0A087WVE0 104 aa9.7□□□□□ -0.86
CIITA-213ENST00000618327 IGKV2D-28P01615 120 aa9.7□□□□□ -0.86
CIITA-213ENST00000618327 MUC7Q8TAX7 377 aa9.7□□□□□ -0.86
CIITA-213ENST00000618327 SBSPONQ8IVN8 264 aa9.69□□□□□ -0.86
CIITA-213ENST00000618327 Q8NAQ8 132 aa9.69□□□□□ -0.86
CIITA-213ENST00000618327 SERP1Q9Y6X1 66 aa9.69□□□□□ -0.86
CIITA-213ENST00000618327 LY6G6CO95867 125 aa9.68□□□□□ -0.86
CIITA-213ENST00000618327 M0R378 163 aa9.68□□□□□ -0.86
CIITA-213ENST00000618327 NHLRC4P0CG21 123 aaPredicted RBP9.68□□□□□ -0.86
CIITA-213ENST00000618327 C9orf116Q5BN46 136 aaPredicted RBP9.68□□□□□ -0.86
CIITA-213ENST00000618327 ADAMTSL4-AS1Q5T5F5 129 aa9.67□□□□□ -0.86
CIITA-213ENST00000618327 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.67□□□□□ -0.86
CIITA-213ENST00000618327 CSNK1G2-AS1Q8NCQ2 148 aa9.67□□□□□ -0.86
CIITA-213ENST00000618327 DMXL1Q9Y485 3027 aa9.67□□□□□ -0.86
CIITA-213ENST00000618327 SOSTDC1Q6X4U4 206 aa9.67□□□□□ -0.86
CIITA-213ENST00000618327 ZNF73O43830 326 aaPredicted RBP9.67□□□□□ -0.86
CIITA-213ENST00000618327 EGFEM1PQ0D2K5 195 aa9.67□□□□□ -0.86
CIITA-213ENST00000618327 DHRS4-AS1Q9P1J3 65 aa9.67□□□□□ -0.86
CIITA-213ENST00000618327 ATMQ13315 3056 aa9.66□□□□□ -0.86
CIITA-213ENST00000618327 C19orf73Q9NVV2 129 aa9.66□□□□□ -0.86
CIITA-213ENST00000618327 LOC107984640A0A0U1RRK4 108 aa9.65□□□□□ -0.86
CIITA-213ENST00000618327 CR1P17927 2039 aa9.65□□□□□ -0.86
CIITA-213ENST00000618327 PMAIP1Q13794 54 aa9.65□□□□□ -0.87
CIITA-213ENST00000618327 TEP1Q99973 2627 aaKnown RBP9.64□□□□□ -0.87
CIITA-213ENST00000618327 RPL28P46779 137 aaKnown RBP9.64□□□□□ -0.87
CIITA-213ENST00000618327 LRCOL1A6NCL2 159 aa9.64□□□□□ -0.87
CIITA-213ENST00000618327 IGHV3OR16-9A0A0B4J2B5 98 aa9.64□□□□□ -0.87
CIITA-213ENST00000618327 LINC01561Q8N1V8 128 aa9.64□□□□□ -0.87
CIITA-213ENST00000618327 FAM30AQ9NZY2 134 aa9.63□□□□□ -0.87
CIITA-213ENST00000618327 ESRGQ1W209 222 aa9.63□□□□□ -0.87
CIITA-213ENST00000618327 H3BNG1 76 aa9.63□□□□□ -0.87
CIITA-213ENST00000618327 PPDPFQ9H3Y8 114 aa9.63□□□□□ -0.87
CIITA-213ENST00000618327 GIG44P09565 113 aaPredicted RBP9.62□□□□□ -0.87
CIITA-213ENST00000618327 C6orf223Q8N319 242 aa9.62□□□□□ -0.87
CIITA-213ENST00000618327 IGLV5-39A0A0G2JS06 123 aa9.62□□□□□ -0.87
CIITA-213ENST00000618327 SPINK6Q6UWN8 80 aa9.62□□□□□ -0.87
CIITA-213ENST00000618327 ADGRG4Q8IZF6 3080 aa9.61□□□□□ -0.87
CIITA-213ENST00000618327 Q8N3U1 123 aa9.61□□□□□ -0.87
CIITA-213ENST00000618327 Q8N814 137 aa9.6□□□□□ -0.87
CIITA-213ENST00000618327 LINC00208Q96KT6 92 aa9.6□□□□□ -0.87
CIITA-213ENST00000618327 LINC01556Q5JQF7 62 aa9.59□□□□□ -0.87
CIITA-213ENST00000618327 KRTAP10-11P60412 298 aa9.59□□□□□ -0.87
CIITA-213ENST00000618327 C2orf48Q96LS8 159 aa9.59□□□□□ -0.87
CIITA-213ENST00000618327 IGLV5-45A0A087WSX0 123 aa9.58□□□□□ -0.88
CIITA-213ENST00000618327 COL12A1Q99715 3063 aa9.58□□□□□ -0.88
CIITA-213ENST00000618327 RPL37AP8A6NKH3 93 aa9.58□□□□□ -0.88
CIITA-213ENST00000618327 PRR3P79522 188 aaKnown RBP9.58□□□□□ -0.88
CIITA-213ENST00000618327 A0A087WYN8 130 aa9.56□□□□□ -0.88
CIITA-213ENST00000618327 PRYO14603 147 aa9.56□□□□□ -0.88
CIITA-213ENST00000618327 F8WDY8 70 aa9.56□□□□□ -0.88
CIITA-213ENST00000618327 CDIP1Q9H305 208 aa9.56□□□□□ -0.88
CIITA-213ENST00000618327 LINC00474Q9P2X8 69 aa9.55□□□□□ -0.88
CIITA-213ENST00000618327 TRBV10-3A0A0K0K1G6 114 aa9.55□□□□□ -0.88
CIITA-213ENST00000618327 PLAC8L1A1L4L8 177 aa9.55□□□□□ -0.88
CIITA-213ENST00000618327 Q6ZRU5 148 aa9.54□□□□□ -0.88
CIITA-213ENST00000618327 C1orf137Q5JT78 98 aa9.54□□□□□ -0.88
CIITA-213ENST00000618327 MYO15AQ9UKN7 3530 aa9.54□□□□□ -0.88
CIITA-213ENST00000618327 LINC00846Q9NV44 126 aa9.53□□□□□ -0.88
CIITA-213ENST00000618327 TEX15Q9BXT5 2789 aa9.53□□□□□ -0.88
CIITA-213ENST00000618327 TRBV7-7A0A0K0K1E9 115 aa9.52□□□□□ -0.88
CIITA-213ENST00000618327 PSPHP1O15172 72 aa9.52□□□□□ -0.89
CIITA-213ENST00000618327 NBEAQ8NFP9 2946 aa9.52□□□□□ -0.89
CIITA-213ENST00000618327 K7EIL1 84 aa9.52□□□□□ -0.89
CIITA-213ENST00000618327 TMEM254Q8TBM7 123 aa9.52□□□□□ -0.89
CIITA-213ENST00000618327 C7orf33Q8WU49 177 aa9.51□□□□□ -0.89
CIITA-213ENST00000618327 USP34Q70CQ2 3546 aa9.51□□□□□ -0.89
CIITA-213ENST00000618327 LINC01547P58512 204 aaPredicted RBP9.5□□□□□ -0.89
CIITA-213ENST00000618327 MDFIQ99750 246 aa9.5□□□□□ -0.89
CIITA-213ENST00000618327 ZNF706Q9Y5V0 76 aaPredicted RBP9.49□□□□□ -0.89
CIITA-213ENST00000618327 LINC00575Q6W349 94 aa9.49□□□□□ -0.89
CIITA-213ENST00000618327 LINC00612Q8N6U2 182 aa9.49□□□□□ -0.89
CIITA-213ENST00000618327 Q6ZVQ6 151 aa9.49□□□□□ -0.89
CIITA-213ENST00000618327 LINC00337Q8N6G1 96 aa9.48□□□□□ -0.89
CIITA-213ENST00000618327 IGLV9-49A0A0B4J1Y8 123 aa9.48□□□□□ -0.89
CIITA-213ENST00000618327 ZNF575Q86XF7 245 aa9.48□□□□□ -0.89
CIITA-213ENST00000618327 SPATA3Q8NHX4 192 aa9.48□□□□□ -0.89
CIITA-213ENST00000618327 TRBV7-6A0A0J9YX20 115 aa9.47□□□□□ -0.89
CIITA-213ENST00000618327 C1orf134Q5TEV5 83 aa9.47□□□□□ -0.89
CIITA-213ENST00000618327 LINC00588Q9Y4M8 146 aa9.47□□□□□ -0.89
CIITA-213ENST00000618327 LOC400499M0QZD8 3231 aa9.47□□□□□ -0.89
CIITA-213ENST00000618327 GCN1Q92616 2671 aaKnown RBP9.46□□□□□ -0.89
CIITA-213ENST00000618327 COL6A5A8TX70 2615 aa9.45□□□□□ -0.9
CIITA-213ENST00000618327 BAHCC1Q9P281 2608 aa9.45□□□□□ -0.9
CIITA-213ENST00000618327 KALRNO60229 2985 aa9.45□□□□□ -0.9
CIITA-213ENST00000618327 PRO0628Q9UI54 55 aa9.45□□□□□ -0.9
CIITA-213ENST00000618327 ZZEF1O43149 2961 aa9.45□□□□□ -0.9
CIITA-213ENST00000618327 IGLV5-52A0A0A0MRZ9 124 aa9.44□□□□□ -0.9
CIITA-213ENST00000618327 C10orf25Q5T742 122 aa9.44□□□□□ -0.9
CIITA-213ENST00000618327 C6orf48Q9UBA6 75 aa9.44□□□□□ -0.9
CIITA-213ENST00000618327 LRBAP50851 2863 aa9.43□□□□□ -0.9
CIITA-213ENST00000618327 STAB1Q9NY15 2570 aa9.43□□□□□ -0.9
CIITA-213ENST00000618327 REG3GQ6UW15 175 aa9.43□□□□□ -0.9
CIITA-213ENST00000618327 SMCPP49901 116 aaPredicted RBP9.43□□□□□ -0.9
CIITA-213ENST00000618327 PCOTHQ58A44 107 aa9.42□□□□□ -0.9
CIITA-213ENST00000618327 CRYGAP11844 174 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms