RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 KRTAP10-4P60372 401 aaPredicted RBP7.41□□□□□ -1.22
LINC00539-204ENST00000608957 ADAMTSL4-AS1Q5T5F5 129 aa7.41□□□□□ -1.22
LINC00539-204ENST00000608957 Q6ZVH6 145 aa7.41□□□□□ -1.22
LINC00539-204ENST00000608957 CIRBP-AS1Q8TBR5 109 aa7.41□□□□□ -1.22
LINC00539-204ENST00000608957 C2orf48Q96LS8 159 aa7.41□□□□□ -1.22
LINC00539-204ENST00000608957 CAMK2N2Q96S95 79 aa7.41□□□□□ -1.22
LINC00539-204ENST00000608957 A0A0U1RRA0 63 aa7.4□□□□□ -1.22
LINC00539-204ENST00000608957 PANO1I0J062 215 aa7.4□□□□□ -1.22
LINC00539-204ENST00000608957 FXYD2P54710 66 aa7.4□□□□□ -1.22
LINC00539-204ENST00000608957 C10orf25Q5T742 122 aa7.4□□□□□ -1.22
LINC00539-204ENST00000608957 UNQ6190/PRO20217Q6UXQ8 127 aa7.4□□□□□ -1.22
LINC00539-204ENST00000608957 C9orf163Q8N9P6 203 aa7.4□□□□□ -1.22
LINC00539-204ENST00000608957 MYCBP2O75592 4640 aa7.39□□□□□ -1.23
LINC00539-204ENST00000608957 LINC00158P58513 81 aa7.39□□□□□ -1.23
LINC00539-204ENST00000608957 DAND5Q8N907 189 aa7.39□□□□□ -1.23
LINC00539-204ENST00000608957 C6orf48Q9UBA6 75 aa7.39□□□□□ -1.23
LINC00539-204ENST00000608957 PKHD1L1Q86WI1 4243 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 TRBV30A0A0K0K1B3 111 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 TMEM238LA0A1B0GVL6 79 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 A6NJY4 79 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 IFITM1P13164 125 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 PFN2P35080 140 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 PTTG1IPP53801 180 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 COX17Q14061 63 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 Q6ZRU5 148 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 MIR7-3HGQ8N6C7 128 aa7.38□□□□□ -1.23
LINC00539-204ENST00000608957 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.38□□□□□ -1.23
LINC00539-204ENST00000608957 NPC2P61916 151 aa7.37□□□□□ -1.23
LINC00539-204ENST00000608957 CNBPP62633 177 aaKnown RBP7.37□□□□□ -1.23
LINC00539-204ENST00000608957 RPL24P83731 157 aaKnown RBP7.37□□□□□ -1.23
LINC00539-204ENST00000608957 SYCNQ0VAF6 134 aa7.37□□□□□ -1.23
LINC00539-204ENST00000608957 C9orf116Q5BN46 136 aaPredicted RBP7.37□□□□□ -1.23
LINC00539-204ENST00000608957 SDIM1Q6ZPB5 146 aa7.37□□□□□ -1.23
LINC00539-204ENST00000608957 MUSTN1Q8IVN3 82 aa7.37□□□□□ -1.23
LINC00539-204ENST00000608957 COPS9Q8WXC6 57 aa7.37□□□□□ -1.23
LINC00539-204ENST00000608957 CARD19Q96LW7 228 aa7.37□□□□□ -1.23
LINC00539-204ENST00000608957 A6NDN8 102 aa7.36□□□□□ -1.23
LINC00539-204ENST00000608957 LINC00308Q8TCZ7 52 aa7.36□□□□□ -1.23
LINC00539-204ENST00000608957 PPDPFQ9H3Y8 114 aa7.36□□□□□ -1.23
LINC00539-204ENST00000608957 PLA2G1BP04054 148 aaKnown RBP7.35□□□□□ -1.23
LINC00539-204ENST00000608957 SOSTDC1Q6X4U4 206 aa7.35□□□□□ -1.23
LINC00539-204ENST00000608957 NHP2Q9NX24 153 aaKnown RBP7.35□□□□□ -1.23
LINC00539-204ENST00000608957 DMBT1Q9UGM3 2413 aaPredicted RBP7.35□□□□□ -1.23
LINC00539-204ENST00000608957 A4D1N5 150 aa7.34□□□□□ -1.23
LINC00539-204ENST00000608957 RNF151Q2KHN1 245 aa7.34□□□□□ -1.23
LINC00539-204ENST00000608957 LBHQ53QV2 105 aaPredicted RBP7.34□□□□□ -1.23
LINC00539-204ENST00000608957 COL5A1-AS1Q5SY13 56 aa7.34□□□□□ -1.23
LINC00539-204ENST00000608957 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.33□□□□□ -1.24
LINC00539-204ENST00000608957 A0A1B0GWB2 263 aa7.33□□□□□ -1.24
LINC00539-204ENST00000608957 EIF4EBP3O60516 100 aaPredicted RBP7.33□□□□□ -1.24
LINC00539-204ENST00000608957 CHTF8P0CG12 524 aa7.33□□□□□ -1.24
LINC00539-204ENST00000608957 NDUFC2-KCTD14E9PQ53 114 aa7.32□□□□□ -1.24
LINC00539-204ENST00000608957 K7ERJ3 54 aa7.32□□□□□ -1.24
LINC00539-204ENST00000608957 SND1-IT1Q9HBX3 110 aa7.32□□□□□ -1.24
LINC00539-204ENST00000608957 A0A0B4J2C4 111 aa7.31□□□□□ -1.24
LINC00539-204ENST00000608957 LOC107984156A0A0G2JMH3 177 aa7.31□□□□□ -1.24
LINC00539-204ENST00000608957 TLX1NBP0CAT3 122 aa7.31□□□□□ -1.24
LINC00539-204ENST00000608957 ARL17AQ8IVW1 177 aa7.31□□□□□ -1.24
LINC00539-204ENST00000608957 HERC1Q15751 4861 aa7.31□□□□□ -1.24
LINC00539-204ENST00000608957 LRP1Q07954 4544 aaKnown RBP7.3□□□□□ -1.24
LINC00539-204ENST00000608957 CFC1BP0CG36 223 aa7.3□□□□□ -1.24
LINC00539-204ENST00000608957 CFC1P0CG37 223 aa7.3□□□□□ -1.24
LINC00539-204ENST00000608957 SPACA4Q8TDM5 124 aa7.3□□□□□ -1.24
LINC00539-204ENST00000608957 TAX1BP3O14907 124 aa7.29□□□□□ -1.24
LINC00539-204ENST00000608957 RPL37AP61513 92 aaKnown RBP7.29□□□□□ -1.24
LINC00539-204ENST00000608957 RPL18AQ02543 176 aaKnown RBP7.29□□□□□ -1.24
LINC00539-204ENST00000608957 RAB37Q96AX2 223 aa7.29□□□□□ -1.24
LINC00539-204ENST00000608957 FAT3Q8TDW7 4589 aa7.29□□□□□ -1.24
LINC00539-204ENST00000608957 A0A087WYN8 130 aa7.28□□□□□ -1.24
LINC00539-204ENST00000608957 LOC107984640A0A0U1RRK4 108 aa7.28□□□□□ -1.24
LINC00539-204ENST00000608957 KRTAP29-1A8MX34 341 aaPredicted RBP7.28□□□□□ -1.24
LINC00539-204ENST00000608957 Q6ZRP5 223 aa7.28□□□□□ -1.24
LINC00539-204ENST00000608957 XAGE1AQ9HD64 81 aa7.28□□□□□ -1.24
LINC00539-204ENST00000608957 NDUFC2O95298 119 aa7.27□□□□□ -1.25
LINC00539-204ENST00000608957 GAGE2EQ4V326 116 aa7.27□□□□□ -1.25
LINC00539-204ENST00000608957 GAGE2DQ9UEU5 116 aa7.27□□□□□ -1.25
LINC00539-204ENST00000608957 PRO1854Q9UHT4 67 aa7.27□□□□□ -1.25
LINC00539-204ENST00000608957 IGKV2-28A0A075B6P5 120 aa7.26□□□□□ -1.25
LINC00539-204ENST00000608957 IGKV2D-28P01615 120 aa7.26□□□□□ -1.25
LINC00539-204ENST00000608957 PLAC8Q9NZF1 115 aa7.26□□□□□ -1.25
LINC00539-204ENST00000608957 PKIGQ9Y2B9 76 aa7.26□□□□□ -1.25
LINC00539-204ENST00000608957 A0A096LNI7 61 aa7.25□□□□□ -1.25
LINC00539-204ENST00000608957 RPL13AP40429 203 aaKnown RBP7.25□□□□□ -1.25
LINC00539-204ENST00000608957 Q8NDZ9 215 aa7.25□□□□□ -1.25
LINC00539-204ENST00000608957 TRAV13-2A0A0B4J235 113 aa7.24□□□□□ -1.25
LINC00539-204ENST00000608957 IGKV2-24A0A0C4DH68 120 aa7.24□□□□□ -1.25
LINC00539-204ENST00000608957 C9orf118A6NHY6 69 aa7.24□□□□□ -1.25
LINC00539-204ENST00000608957 J3QL48 77 aa7.24□□□□□ -1.25
LINC00539-204ENST00000608957 TSPAN13O95857 204 aa7.24□□□□□ -1.25
LINC00539-204ENST00000608957 GAGE2BQ13066 116 aa7.24□□□□□ -1.25
LINC00539-204ENST00000608957 C9orf129Q5T035 196 aaKnown RBP7.24□□□□□ -1.25
LINC00539-204ENST00000608957 LINC00337Q8N6G1 96 aa7.24□□□□□ -1.25
LINC00539-204ENST00000608957 NCR3O14931 201 aa7.23□□□□□ -1.25
LINC00539-204ENST00000608957 VPREB1P12018 145 aa7.23□□□□□ -1.25
LINC00539-204ENST00000608957 Q1RN00 199 aa7.23□□□□□ -1.25
LINC00539-204ENST00000608957 KRTAP3-3Q9BYR6 98 aa7.23□□□□□ -1.25
LINC00539-204ENST00000608957 KRTAP3-2Q9BYR7 98 aa7.23□□□□□ -1.25
LINC00539-204ENST00000608957 TRBV10-2A0A0K0K1G8 114 aa7.22□□□□□ -1.25
LINC00539-204ENST00000608957 H3BUT2 72 aa7.22□□□□□ -1.25
LINC00539-204ENST00000608957 H7C2G1 150 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms