RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 FAM229BQ4G0N7 80 aa4.44□□□□□ -1.7
CUX1-219ENST00000606749 FAM19A1Q7Z5A9 133 aa4.44□□□□□ -1.7
CUX1-219ENST00000606749 BAGE3Q86Y29 109 aa4.44□□□□□ -1.7
CUX1-219ENST00000606749 TMEM126AQ9H061 195 aa4.44□□□□□ -1.7
CUX1-219ENST00000606749 M0R378 163 aa4.43□□□□□ -1.7
CUX1-219ENST00000606749 LORP23490 312 aaPredicted RBP4.43□□□□□ -1.7
CUX1-219ENST00000606749 PRLHP81277 87 aa4.43□□□□□ -1.7
CUX1-219ENST00000606749 TMEM170BQ5T4T1 132 aa4.43□□□□□ -1.7
CUX1-219ENST00000606749 Q8NDZ9 215 aa4.43□□□□□ -1.7
CUX1-219ENST00000606749 PLEKHB2Q96CS7 222 aa4.43□□□□□ -1.7
CUX1-219ENST00000606749 IGKV2D-26A0A0A0MRZ7 120 aa4.42□□□□□ -1.7
CUX1-219ENST00000606749 SFTA2Q6UW10 78 aa4.42□□□□□ -1.7
CUX1-219ENST00000606749 LINC00304Q8N9R0 145 aa4.42□□□□□ -1.7
CUX1-219ENST00000606749 LINC00158P58513 81 aa4.41□□□□□ -1.7
CUX1-219ENST00000606749 CTAG1AP78358 180 aa4.41□□□□□ -1.7
CUX1-219ENST00000606749 CBLN2Q8IUK8 224 aa4.41□□□□□ -1.7
CUX1-219ENST00000606749 RETNLBQ9BQ08 111 aa4.41□□□□□ -1.7
CUX1-219ENST00000606749 CHTOPQ9Y3Y2 248 aaKnown RBP4.41□□□□□ -1.7
CUX1-219ENST00000606749 TMEM223A0PJW6 202 aa4.4□□□□□ -1.71
CUX1-219ENST00000606749 GHRHP01286 108 aa4.4□□□□□ -1.71
CUX1-219ENST00000606749 APOC3P02656 99 aa4.4□□□□□ -1.71
CUX1-219ENST00000606749 MUC2Q02817 5179 aa4.39□□□□□ -1.71
CUX1-219ENST00000606749 TRAV12-1A0A0B4J245 112 aa4.39□□□□□ -1.71
CUX1-219ENST00000606749 A0A0U1RQV1 116 aa4.39□□□□□ -1.71
CUX1-219ENST00000606749 A0A0U1RRA0 63 aa4.39□□□□□ -1.71
CUX1-219ENST00000606749 C3orf22Q8N5N4 141 aa4.39□□□□□ -1.71
CUX1-219ENST00000606749 IFI27L1Q96BM0 104 aa4.39□□□□□ -1.71
CUX1-219ENST00000606749 CHCHD1Q96BP2 118 aaKnown RBP4.39□□□□□ -1.71
CUX1-219ENST00000606749 HIGD2AQ9BW72 106 aa4.39□□□□□ -1.71
CUX1-219ENST00000606749 IGLV7-46A0A075B6I9 117 aa4.38□□□□□ -1.71
CUX1-219ENST00000606749 SNAPINO95295 136 aa4.38□□□□□ -1.71
CUX1-219ENST00000606749 SMIM13P0DJ93 91 aa4.38□□□□□ -1.71
CUX1-219ENST00000606749 TPRXLQ17RH7 258 aa4.38□□□□□ -1.71
CUX1-219ENST00000606749 SVBPQ8N300 66 aa4.38□□□□□ -1.71
CUX1-219ENST00000606749 YPEL4Q96NS1 127 aa4.38□□□□□ -1.71
CUX1-219ENST00000606749 ATP6V1G1O75348 118 aa4.37□□□□□ -1.71
CUX1-219ENST00000606749 SPAG11AQ6PDA7 123 aa4.37□□□□□ -1.71
CUX1-219ENST00000606749 SPRR4Q96PI1 79 aa4.37□□□□□ -1.71
CUX1-219ENST00000606749 CDIP1Q9H305 208 aa4.37□□□□□ -1.71
CUX1-219ENST00000606749 PRYO14603 147 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 SPRR1AP35321 89 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 HERV-K104P63124 156 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 NDUFA5Q16718 116 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 BOD1L2Q8IYS8 172 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 MIR7-3HGQ8N6C7 128 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 PPDPFQ9H3Y8 114 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 KCNQ1DNQ9H478 68 aa4.36□□□□□ -1.71
CUX1-219ENST00000606749 LINC00587B1AMM8 73 aa4.35□□□□□ -1.71
CUX1-219ENST00000606749 KRTAP4-16G5E9R7 235 aaPredicted RBP4.35□□□□□ -1.71
CUX1-219ENST00000606749 NCR3O14931 201 aa4.35□□□□□ -1.71
CUX1-219ENST00000606749 MEIG1Q5JSS6 88 aa4.35□□□□□ -1.71
CUX1-219ENST00000606749 FAM19A2Q8N3H0 131 aa4.35□□□□□ -1.71
CUX1-219ENST00000606749 LINC00337Q8N6G1 96 aa4.35□□□□□ -1.71
CUX1-219ENST00000606749 SMCR5Q8TEV8 140 aa4.35□□□□□ -1.71
CUX1-219ENST00000606749 NDUFA12Q9UI09 145 aa4.35□□□□□ -1.71
CUX1-219ENST00000606749 ZNF706Q9Y5V0 76 aaPredicted RBP4.35□□□□□ -1.71
CUX1-219ENST00000606749 MYMXA0A1B0GTQ4 84 aa4.34□□□□□ -1.71
CUX1-219ENST00000606749 HSBP1O75506 76 aa4.34□□□□□ -1.71
CUX1-219ENST00000606749 LOC107984156A0A0G2JMH3 177 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 TRBV10-3A0A0K0K1G6 114 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 ETDCA0A1B0GVM5 59 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 H0Y8G0 127 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 ARL17AQ8IVW1 177 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 DAND5Q8N907 189 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 Q8NBF4 154 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 MAP1LC3CQ9BXW4 147 aa4.33□□□□□ -1.72
CUX1-219ENST00000606749 LEPROTO15243 131 aa4.32□□□□□ -1.72
CUX1-219ENST00000606749 TRGC2P03986 189 aa4.32□□□□□ -1.72
CUX1-219ENST00000606749 TSPEAR-AS2P59090 65 aa4.32□□□□□ -1.72
CUX1-219ENST00000606749 LINC00483Q53H64 154 aa4.32□□□□□ -1.72
CUX1-219ENST00000606749 FP248Q71RG6 208 aaPredicted RBP4.32□□□□□ -1.72
CUX1-219ENST00000606749 TRBV10-2A0A0K0K1G8 114 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 B5MCH6 92 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 ERC2-IT1O76042 136 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 LEPROTL1O95214 131 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 SPINK1P00995 79 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 LINC00310P59036 64 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 S100A12P80511 92 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 GAGE2AQ6NT46 116 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 KRTAP9-2Q9BYQ4 174 aa4.31□□□□□ -1.72
CUX1-219ENST00000606749 J3QQQ9 107 aa4.3□□□□□ -1.72
CUX1-219ENST00000606749 SERF1AO75920 110 aa4.3□□□□□ -1.72
CUX1-219ENST00000606749 PLNP26678 52 aa4.3□□□□□ -1.72
CUX1-219ENST00000606749 DDTP30046 118 aa4.3□□□□□ -1.72
CUX1-219ENST00000606749 KRTAP13-3Q3SY46 172 aa4.3□□□□□ -1.72
CUX1-219ENST00000606749 Q9BRP9 147 aa4.3□□□□□ -1.72
CUX1-219ENST00000606749 IGLV9-49A0A0B4J1Y8 123 aa4.29□□□□□ -1.72
CUX1-219ENST00000606749 DPM2O94777 84 aa4.29□□□□□ -1.72
CUX1-219ENST00000606749 FABP4P15090 132 aa4.29□□□□□ -1.72
CUX1-219ENST00000606749 NMUP48645 174 aa4.29□□□□□ -1.72
CUX1-219ENST00000606749 SSBP3-AS1Q7Z2R9 100 aa4.29□□□□□ -1.72
CUX1-219ENST00000606749 PMCHL2Q9BQD1 86 aa4.29□□□□□ -1.72
CUX1-219ENST00000606749 HSPB8Q9UJY1 196 aa4.29□□□□□ -1.72
CUX1-219ENST00000606749 NDUFC2O95298 119 aa4.28□□□□□ -1.72
CUX1-219ENST00000606749 IGLV6-57P01721 117 aa4.28□□□□□ -1.72
CUX1-219ENST00000606749 IGKCP01834 107 aa4.28□□□□□ -1.72
CUX1-219ENST00000606749 LGALS3P17931 250 aaKnown RBP4.28□□□□□ -1.72
CUX1-219ENST00000606749 HERVK_113P61574 105 aa4.28□□□□□ -1.72
CUX1-219ENST00000606749 MOBPQ13875 183 aa4.28□□□□□ -1.72
CUX1-219ENST00000606749 S100A7L2Q5SY68 101 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms