RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LINC00242Q5T6M2 205 aa6.88□□□□□ -1.31
LIG3-216ENST00000593099 LINC00474Q9P2X8 69 aa6.88□□□□□ -1.31
LIG3-216ENST00000593099 FRYQ5TBA9 3013 aa6.88□□□□□ -1.31
LIG3-216ENST00000593099 MAP1AP78559 2803 aaPredicted RBP6.88□□□□□ -1.31
LIG3-216ENST00000593099 Q8IZM0 81 aa6.88□□□□□ -1.31
LIG3-216ENST00000593099 LINC01556Q5JQF7 62 aa6.87□□□□□ -1.31
LIG3-216ENST00000593099 CSNK1G2-AS1Q8NCQ2 148 aa6.87□□□□□ -1.31
LIG3-216ENST00000593099 IGKV2D-26A0A0A0MRZ7 120 aa6.87□□□□□ -1.31
LIG3-216ENST00000593099 IGLV5-52A0A0A0MRZ9 124 aa6.87□□□□□ -1.31
LIG3-216ENST00000593099 CYSRT1A8MQ03 144 aa6.86□□□□□ -1.31
LIG3-216ENST00000593099 Q6JHZ5 121 aa6.86□□□□□ -1.31
LIG3-216ENST00000593099 LINC00315P59091 139 aa6.86□□□□□ -1.31
LIG3-216ENST00000593099 HIGD2AQ9BW72 106 aa6.86□□□□□ -1.31
LIG3-216ENST00000593099 CRYGAP11844 174 aa6.86□□□□□ -1.31
LIG3-216ENST00000593099 RETNLBQ9BQ08 111 aa6.86□□□□□ -1.31
LIG3-216ENST00000593099 TP73-AS1Q9UF72 201 aa6.85□□□□□ -1.31
LIG3-216ENST00000593099 TM2D3Q9BRN9 247 aa6.85□□□□□ -1.31
LIG3-216ENST00000593099 COX7BP24311 80 aa6.85□□□□□ -1.31
LIG3-216ENST00000593099 REV3LO60673 3130 aa6.84□□□□□ -1.31
LIG3-216ENST00000593099 C3orf84H3BNL1 204 aa6.84□□□□□ -1.31
LIG3-216ENST00000593099 FAM19A1Q7Z5A9 133 aa6.84□□□□□ -1.31
LIG3-216ENST00000593099 UNQ6190/PRO20217Q6UXQ8 127 aa6.83□□□□□ -1.32
LIG3-216ENST00000593099 TMEM254Q8TBM7 123 aa6.83□□□□□ -1.32
LIG3-216ENST00000593099 TRBV30A0A0K0K1B3 111 aa6.83□□□□□ -1.32
LIG3-216ENST00000593099 LINC00336Q6ZUF6 198 aa6.83□□□□□ -1.32
LIG3-216ENST00000593099 AMELXQ99217 191 aa6.83□□□□□ -1.32
LIG3-216ENST00000593099 LINC00308Q8TCZ7 52 aa6.83□□□□□ -1.32
LIG3-216ENST00000593099 C8orf87E5RJ46 101 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 GIG44P09565 113 aaPredicted RBP6.82□□□□□ -1.32
LIG3-216ENST00000593099 COX17Q14061 63 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 C6orf223Q8N319 242 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 LIMD2Q9BT23 127 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 DMXL1Q9Y485 3027 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 NTM-AS1Q6ZSK4 140 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 URB1-AS1Q96HZ7 61 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 SPAG11AQ6PDA7 123 aa6.82□□□□□ -1.32
LIG3-216ENST00000593099 ATMQ13315 3056 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 SMIM1B2RUZ4 78 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 SPTBN5Q9NRC6 3674 aaKnown RBP6.81□□□□□ -1.32
LIG3-216ENST00000593099 EYSQ5T1H1 3165 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 NBDYA0A0U1RRE5 68 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 PRYO14603 147 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 ZNF73O43830 326 aaPredicted RBP6.81□□□□□ -1.32
LIG3-216ENST00000593099 C2orf48Q96LS8 159 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 ITPR2Q14571 2701 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 M0R378 163 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 TRIAP1O43715 76 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 IGKV4-1P06312 121 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 LCA10Q71F78 164 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 CDIP1Q9H305 208 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 LINC00588Q9Y4M8 146 aa6.81□□□□□ -1.32
LIG3-216ENST00000593099 Q8N9L7 120 aa6.8□□□□□ -1.32
LIG3-216ENST00000593099 COX6A2Q02221 97 aa6.8□□□□□ -1.32
LIG3-216ENST00000593099 KTN1-AS1Q86SY8 53 aa6.79□□□□□ -1.32
LIG3-216ENST00000593099 LINC01561Q8N1V8 128 aa6.79□□□□□ -1.32
LIG3-216ENST00000593099 MAPKAPK5-AS1Q8N8E1 139 aa6.79□□□□□ -1.32
LIG3-216ENST00000593099 COL12A1Q99715 3063 aa6.79□□□□□ -1.32
LIG3-216ENST00000593099 A0A087WVE0 104 aa6.79□□□□□ -1.32
LIG3-216ENST00000593099 C2orf91Q6ZV80 131 aa6.79□□□□□ -1.32
LIG3-216ENST00000593099 Q9UF83 564 aa6.78□□□□□ -1.32
LIG3-216ENST00000593099 IGKV2-28A0A075B6P5 120 aa6.78□□□□□ -1.32
LIG3-216ENST00000593099 IGKV2D-28P01615 120 aa6.78□□□□□ -1.32
LIG3-216ENST00000593099 TRBV7-7A0A0K0K1E9 115 aa6.77□□□□□ -1.32
LIG3-216ENST00000593099 LINC00310P59036 64 aa6.77□□□□□ -1.33
LIG3-216ENST00000593099 A0A096LNJ9 63 aa6.76□□□□□ -1.33
LIG3-216ENST00000593099 C9orf116Q5BN46 136 aaPredicted RBP6.76□□□□□ -1.33
LIG3-216ENST00000593099 NOTCH1P46531 2555 aa6.76□□□□□ -1.33
LIG3-216ENST00000593099 SPINT4Q6UDR6 99 aa6.75□□□□□ -1.33
LIG3-216ENST00000593099 LINC00612Q8N6U2 182 aa6.75□□□□□ -1.33
LIG3-216ENST00000593099 UBR5O95071 2799 aaPredicted RBP6.75□□□□□ -1.33
LIG3-216ENST00000593099 C6orf99Q4VX62 202 aa6.75□□□□□ -1.33
LIG3-216ENST00000593099 RPL37AP8A6NKH3 93 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 DNAH10OSP0CZ25 163 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 HCG22E2RYF7 251 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 TRBV10-3A0A0K0K1G6 114 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 LST1O00453 97 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 CCKP06307 115 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 IGHV3OR16-9A0A0B4J2B5 98 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 Q6ZRU5 148 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 HIVEP1P15822 2718 aa6.74□□□□□ -1.33
LIG3-216ENST00000593099 BOD1L1Q8NFC6 3051 aa6.73□□□□□ -1.33
LIG3-216ENST00000593099 KALRNO60229 2985 aa6.73□□□□□ -1.33
LIG3-216ENST00000593099 C7orf65Q6ZTY9 151 aa6.73□□□□□ -1.33
LIG3-216ENST00000593099 ITPR1Q14643 2758 aa6.72□□□□□ -1.33
LIG3-216ENST00000593099 A0A096LNI7 61 aa6.72□□□□□ -1.33
LIG3-216ENST00000593099 RPL28P46779 137 aaKnown RBP6.72□□□□□ -1.33
LIG3-216ENST00000593099 DHRS4-AS1Q9P1J3 65 aa6.71□□□□□ -1.33
LIG3-216ENST00000593099 CELSR3Q9NYQ7 3312 aa6.71□□□□□ -1.33
LIG3-216ENST00000593099 FREM2Q5SZK8 3169 aa6.71□□□□□ -1.34
LIG3-216ENST00000593099 Q6ZVQ6 151 aa6.71□□□□□ -1.34
LIG3-216ENST00000593099 Q8N3U1 123 aa6.71□□□□□ -1.34
LIG3-216ENST00000593099 LINC01546A6NGU7 62 aa6.7□□□□□ -1.34
LIG3-216ENST00000593099 H0Y9J4 135 aa6.7□□□□□ -1.34
LIG3-216ENST00000593099 TSPEAR-AS2P59090 65 aa6.68□□□□□ -1.34
LIG3-216ENST00000593099 FAM30AQ9NZY2 134 aa6.68□□□□□ -1.34
LIG3-216ENST00000593099 APCP25054 2843 aa6.68□□□□□ -1.34
LIG3-216ENST00000593099 C16orf90A8MZG2 172 aa6.68□□□□□ -1.34
LIG3-216ENST00000593099 NBEAQ8NFP9 2946 aa6.68□□□□□ -1.34
LIG3-216ENST00000593099 IGLV5-39A0A0G2JS06 123 aa6.67□□□□□ -1.34
LIG3-216ENST00000593099 APLNQ9ULZ1 77 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms