RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 CCL25O15444 150 aa6.77□□□□□ -1.33
ZNF540-209ENST00000590588 EIF4EBP3O60516 100 aaPredicted RBP6.77□□□□□ -1.33
ZNF540-209ENST00000590588 UBE2D1P51668 147 aa6.77□□□□□ -1.33
ZNF540-209ENST00000590588 PTTG1IPP53801 180 aa6.77□□□□□ -1.33
ZNF540-209ENST00000590588 VAMP3Q15836 100 aa6.77□□□□□ -1.33
ZNF540-209ENST00000590588 PRR4Q16378 134 aa6.77□□□□□ -1.33
ZNF540-209ENST00000590588 SFTA2Q6UW10 78 aa6.77□□□□□ -1.33
ZNF540-209ENST00000590588 IGLV10-54A0A075B6I4 117 aa6.76□□□□□ -1.33
ZNF540-209ENST00000590588 TRAV8-4A0A0B4J246 113 aa6.76□□□□□ -1.33
ZNF540-209ENST00000590588 FXYD2P54710 66 aa6.76□□□□□ -1.33
ZNF540-209ENST00000590588 RBX1P62877 108 aa6.76□□□□□ -1.33
ZNF540-209ENST00000590588 COPS9Q8WXC6 57 aa6.76□□□□□ -1.33
ZNF540-209ENST00000590588 FAM104AQ969W3 186 aa6.76□□□□□ -1.33
ZNF540-209ENST00000590588 TMEM243Q9BU79 118 aa6.76□□□□□ -1.33
ZNF540-209ENST00000590588 A0A1W2PPM0 123 aa6.75□□□□□ -1.33
ZNF540-209ENST00000590588 K7EP34 96 aa6.75□□□□□ -1.33
ZNF540-209ENST00000590588 FABP2P12104 132 aa6.75□□□□□ -1.33
ZNF540-209ENST00000590588 REG3AQ06141 175 aa6.75□□□□□ -1.33
ZNF540-209ENST00000590588 TMEM101Q96IK0 257 aa6.75□□□□□ -1.33
ZNF540-209ENST00000590588 GEMIN7Q9H840 131 aaKnown RBP6.75□□□□□ -1.33
ZNF540-209ENST00000590588 LINC00474Q9P2X8 69 aa6.75□□□□□ -1.33
ZNF540-209ENST00000590588 CRCT1Q9UGL9 99 aa6.75□□□□□ -1.33
ZNF540-209ENST00000590588 IGLV5-39A0A0G2JS06 123 aa6.74□□□□□ -1.33
ZNF540-209ENST00000590588 IFITM1P13164 125 aa6.74□□□□□ -1.33
ZNF540-209ENST00000590588 CFAP161Q6P656 301 aa6.74□□□□□ -1.33
ZNF540-209ENST00000590588 LINC01561Q8N1V8 128 aa6.74□□□□□ -1.33
ZNF540-209ENST00000590588 SPANXDQ9BXN6 97 aa6.74□□□□□ -1.33
ZNF540-209ENST00000590588 SPANXCQ9NY87 97 aa6.74□□□□□ -1.33
ZNF540-209ENST00000590588 FSIP2Q5CZC0 6907 aa6.73□□□□□ -1.33
ZNF540-209ENST00000590588 GAGE10A6NGK3 116 aa6.73□□□□□ -1.33
ZNF540-209ENST00000590588 UBE2L6O14933 153 aa6.73□□□□□ -1.33
ZNF540-209ENST00000590588 RPL24P83731 157 aaKnown RBP6.73□□□□□ -1.33
ZNF540-209ENST00000590588 GAGE6Q13070 117 aa6.73□□□□□ -1.33
ZNF540-209ENST00000590588 Q6ZUT4 128 aa6.73□□□□□ -1.33
ZNF540-209ENST00000590588 TTTY13Q9BZ97 58 aa6.73□□□□□ -1.33
ZNF540-209ENST00000590588 CDC42SE2Q9NRR3 84 aa6.73□□□□□ -1.33
ZNF540-209ENST00000590588 NHP2Q9NX24 153 aaKnown RBP6.73□□□□□ -1.33
ZNF540-209ENST00000590588 A0A0B4J2C4 111 aa6.72□□□□□ -1.33
ZNF540-209ENST00000590588 A0A1B0GUV1 79 aa6.72□□□□□ -1.33
ZNF540-209ENST00000590588 NDUFA1O15239 70 aa6.72□□□□□ -1.33
ZNF540-209ENST00000590588 HERV-K104P63124 156 aa6.72□□□□□ -1.33
ZNF540-209ENST00000590588 AMMECR1LQ6DCA0 310 aa6.72□□□□□ -1.33
ZNF540-209ENST00000590588 NTM-AS1Q6ZSK4 140 aa6.72□□□□□ -1.33
ZNF540-209ENST00000590588 CBY1Q9Y3M2 126 aa6.72□□□□□ -1.33
ZNF540-209ENST00000590588 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.71□□□□□ -1.34
ZNF540-209ENST00000590588 A0A096LNI7 61 aa6.71□□□□□ -1.34
ZNF540-209ENST00000590588 IGKV2-29A2NJV5 120 aaPredicted RBP6.71□□□□□ -1.34
ZNF540-209ENST00000590588 H3BUT2 72 aa6.71□□□□□ -1.34
ZNF540-209ENST00000590588 TSPEAR-AS2P59090 65 aa6.71□□□□□ -1.34
ZNF540-209ENST00000590588 PRR26Q8N8Z3 221 aa6.71□□□□□ -1.34
ZNF540-209ENST00000590588 LINC00242Q5T6M2 205 aa6.7□□□□□ -1.34
ZNF540-209ENST00000590588 OPRPNQ99935 248 aaPredicted RBP6.7□□□□□ -1.34
ZNF540-209ENST00000590588 NDUFA12Q9UI09 145 aa6.7□□□□□ -1.34
ZNF540-209ENST00000590588 SPCS1Q9Y6A9 102 aa6.7□□□□□ -1.34
ZNF540-209ENST00000590588 TRBV20-1A0A075B6N2 111 aa6.69□□□□□ -1.34
ZNF540-209ENST00000590588 C15orf56Q8N910 161 aa6.69□□□□□ -1.34
ZNF540-209ENST00000590588 PKIGQ9Y2B9 76 aa6.69□□□□□ -1.34
ZNF540-209ENST00000590588 HIGD2BQ4VC39 106 aa6.68□□□□□ -1.34
ZNF540-209ENST00000590588 SMIM1B2RUZ4 78 aa6.67□□□□□ -1.34
ZNF540-209ENST00000590588 F8W1H4 67 aa6.67□□□□□ -1.34
ZNF540-209ENST00000590588 LITAFQ99732 161 aa6.67□□□□□ -1.34
ZNF540-209ENST00000590588 CDKN2A-AS1Q9UH64 79 aa6.67□□□□□ -1.34
ZNF540-209ENST00000590588 PRO1854Q9UHT4 67 aa6.67□□□□□ -1.34
ZNF540-209ENST00000590588 IGLV1-50A0A075B6I6 118 aa6.66□□□□□ -1.34
ZNF540-209ENST00000590588 GAGE12HA6NDE8 117 aa6.66□□□□□ -1.34
ZNF540-209ENST00000590588 K7ERU9 68 aa6.66□□□□□ -1.34
ZNF540-209ENST00000590588 M0QXV9 152 aa6.66□□□□□ -1.34
ZNF540-209ENST00000590588 IGLV4-60A0A075B6I1 120 aa6.65□□□□□ -1.34
ZNF540-209ENST00000590588 DIRC1Q969H9 104 aa6.65□□□□□ -1.34
ZNF540-209ENST00000590588 RAB37Q96AX2 223 aa6.65□□□□□ -1.34
ZNF540-209ENST00000590588 A0A087WZ39 114 aa6.64□□□□□ -1.35
ZNF540-209ENST00000590588 C1orf137Q5JT78 98 aa6.64□□□□□ -1.35
ZNF540-209ENST00000590588 ZNF625Q96I27 306 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-209ENST00000590588 GVQW2A0A096LPI5 108 aaPredicted RBP6.63□□□□□ -1.35
ZNF540-209ENST00000590588 IGHV3OR16-9A0A0B4J2B5 98 aa6.63□□□□□ -1.35
ZNF540-209ENST00000590588 K7ERJ3 54 aa6.63□□□□□ -1.35
ZNF540-209ENST00000590588 TSPAN13O95857 204 aa6.63□□□□□ -1.35
ZNF540-209ENST00000590588 SPINK8P0C7L1 97 aa6.63□□□□□ -1.35
ZNF540-209ENST00000590588 CFC1BP0CG36 223 aa6.63□□□□□ -1.35
ZNF540-209ENST00000590588 CFC1P0CG37 223 aa6.63□□□□□ -1.35
ZNF540-209ENST00000590588 CXCL5P42830 114 aa6.63□□□□□ -1.35
ZNF540-209ENST00000590588 TRBV30A0A0K0K1B3 111 aa6.62□□□□□ -1.35
ZNF540-209ENST00000590588 A4D1N5 150 aa6.62□□□□□ -1.35
ZNF540-209ENST00000590588 J3QR89 54 aa6.62□□□□□ -1.35
ZNF540-209ENST00000590588 SS18Q15532 418 aa6.62□□□□□ -1.35
ZNF540-209ENST00000590588 MUC17Q685J3 4493 aa6.61□□□□□ -1.35
ZNF540-209ENST00000590588 TRAV13-1A0A0B4J241 112 aa6.61□□□□□ -1.35
ZNF540-209ENST00000590588 OCIAD2Q56VL3 154 aa6.61□□□□□ -1.35
ZNF540-209ENST00000590588 RNASE13Q5GAN3 156 aaKnown RBP6.61□□□□□ -1.35
ZNF540-209ENST00000590588 MUSTN1Q8IVN3 82 aa6.61□□□□□ -1.35
ZNF540-209ENST00000590588 ERG28Q9UKR5 140 aa6.61□□□□□ -1.35
ZNF540-209ENST00000590588 LINC00959A0A1B0GUT2 108 aa6.6□□□□□ -1.35
ZNF540-209ENST00000590588 A0A1W2PNN7 141 aa6.6□□□□□ -1.35
ZNF540-209ENST00000590588 H0Y9J4 135 aa6.6□□□□□ -1.35
ZNF540-209ENST00000590588 IGLV7-43P04211 117 aa6.6□□□□□ -1.35
ZNF540-209ENST00000590588 COX6CP09669 75 aa6.6□□□□□ -1.35
ZNF540-209ENST00000590588 RPL13AP40429 203 aaKnown RBP6.6□□□□□ -1.35
ZNF540-209ENST00000590588 Q8IZM0 81 aa6.6□□□□□ -1.35
ZNF540-209ENST00000590588 COX7B2Q8TF08 81 aa6.6□□□□□ -1.35
ZNF540-209ENST00000590588 CARD19Q96LW7 228 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms