RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	DSP	P15924	2871 aa	Known RBP	2.91	□□□□□ -1.94
SS18-223	ENST00000583595	CACNA1D	Q01668	2161 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	RTTN	Q86VV8	2226 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	TRAV10	A0A0B4J240	114 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595		J3QKU1	62 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	PRB4	P10163	310 aa	Predicted RBP	2.91	□□□□□ -1.94
SS18-223	ENST00000583595	LINC00315	P59091	139 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	NREP	Q16612	68 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	ATP11AUN	Q6ZP68	121 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	C7orf65	Q6ZTY9	151 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	GAFA1	Q96PS6	74 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	ASPM	Q8IZT6	3477 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	MED12	Q93074	2177 aa		2.91	□□□□□ -1.94
SS18-223	ENST00000583595	IGSF10	Q6WRI0	2623 aa		2.9	□□□□□ -1.94
SS18-223	ENST00000583595	ACACA	Q13085	2346 aa		2.9	□□□□□ -1.95
SS18-223	ENST00000583595	PDE6G	P18545	87 aa		2.9	□□□□□ -1.95
SS18-223	ENST00000583595	DEFB133	Q30KQ1	61 aa		2.9	□□□□□ -1.95
SS18-223	ENST00000583595	KPRP	Q5T749	579 aa	Predicted RBP	2.9	□□□□□ -1.95
SS18-223	ENST00000583595	FLNB	O75369	2602 aa	Known RBP	2.9	□□□□□ -1.95
SS18-223	ENST00000583595	LAMA1	P25391	3075 aa		2.9	□□□□□ -1.95
SS18-223	ENST00000583595	GCN1	Q92616	2671 aa	Known RBP	2.9	□□□□□ -1.95
SS18-223	ENST00000583595	ZNF462	Q96JM2	2506 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	FREM2	Q5SZK8	3169 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	IGKV2D-24	A0A075B6R9	120 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	LOC110117498	A0A087WWA1	95 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	TRAV22	A0A0B4J277	110 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595		A8MU10	97 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	DNAH10OS	P0CZ25	163 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	SCX	Q7RTU7	201 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	LINC00269	Q8N2A0	174 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	SMIM11B	Q8TCY0	68 aa		2.89	□□□□□ -1.95
SS18-223	ENST00000583595	DMXL2	Q8TDJ6	3036 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595	URB1	O60287	2271 aa	Known RBP	2.88	□□□□□ -1.95
SS18-223	ENST00000583595	HELZ2	Q9BYK8	2649 aa	Known RBP	2.88	□□□□□ -1.95
SS18-223	ENST00000583595	IGHV3OR16-8	A0A075B7F1	116 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595	IGKV2-29	A2NJV5	120 aa	Predicted RBP	2.88	□□□□□ -1.95
SS18-223	ENST00000583595		A6NN06	94 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595	RNASE3	P12724	160 aa	Known RBP	2.88	□□□□□ -1.95
SS18-223	ENST00000583595	KRTAP12-2	P59991	146 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595	IGFL3	Q6UXB1	125 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595	DIRC1	Q969H9	104 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595	CYP4F30P	Q9H0H9	118 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595		U3KQA8	63 aa		2.88	□□□□□ -1.95
SS18-223	ENST00000583595	SETX	Q7Z333	2677 aa	Known RBP	2.88	□□□□□ -1.95
SS18-223	ENST00000583595	SMG1	Q96Q15	3661 aa	Known RBP	2.88	□□□□□ -1.95
SS18-223	ENST00000583595	PCNX2	A6NKB5	2137 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	RP1	P56715	2156 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595		M0QY20	66 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	APELA	P0DMC3	54 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	CCL4	P13236	92 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	HAMP	P81172	84 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	PRR9	Q5T870	116 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595		Q6ZQT0	140 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	LIMD2	Q9BT23	127 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	NBEA	Q8NFP9	2946 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	PI4KA	P42356	2102 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	ASH1L	Q9NR48	2969 aa	Known RBP	2.87	□□□□□ -1.95
SS18-223	ENST00000583595	PRRC2A	P48634	2157 aa	Known RBP	2.87	□□□□□ -1.95
SS18-223	ENST00000583595	LAMA5	O15230	3695 aa		2.87	□□□□□ -1.95
SS18-223	ENST00000583595	MAST4	O15021	2626 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	TRBV6-8	A0A0A6YYG3	113 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	TRBV10-1	A0A0K0K1A3	114 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595		A0A1W2PNU3	283 aa	Predicted RBP	2.86	□□□□□ -1.95
SS18-223	ENST00000583595	CLPSL1	A2RUU4	121 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	GNRH2	O43555	120 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	PSCA	O43653	123 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595		Q5VV11	94 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	C1orf64	Q8NEQ6	169 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	CDKN2A-AS1	Q9UH64	79 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	CFAP46	Q8IYW2	2715 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	PTPRQ	Q9UMZ3	2332 aa		2.86	□□□□□ -1.95
SS18-223	ENST00000583595	SPTA1	P02549	2419 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	KALRN	O60229	2985 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	WDFY3	Q8IZQ1	3526 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	ASXL3	Q9C0F0	2248 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	KNL1	Q8NG31	2342 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	HECTD1	Q9ULT8	2610 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	IGKV2-28	A0A075B6P5	120 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	HCG22	E2RYF7	251 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	IGKV2D-28	P01615	120 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	CCL3L1	P16619	93 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	MOBP	Q13875	183 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	CELSR3	Q9NYQ7	3312 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	TNC	P24821	2201 aa		2.85	□□□□□ -1.95
SS18-223	ENST00000583595	FREM1	Q5H8C1	2179 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	LOC400499	M0QZD8	3231 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	LCE6A	A0A183	80 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	CHKB-CPT1B	H3BT56	60 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	LY6H	O94772	140 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	IGHV3-53	P01767	116 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	KLK9	Q2XQG4	91 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595		Q8N814	137 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	DEFB108B	Q8NET1	73 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	KLK9	Q9UKQ9	250 aa		2.84	□□□□□ -1.95
SS18-223	ENST00000583595	POLE	Q07864	2286 aa		2.84	□□□□□ -1.96
SS18-223	ENST00000583595	TENM4	Q6N022	2769 aa		2.83	□□□□□ -1.96
SS18-223	ENST00000583595	IGLV3-9	A0A075B6K5	115 aa		2.83	□□□□□ -1.96
SS18-223	ENST00000583595	ELOF1	P60002	83 aa	Known RBP	2.83	□□□□□ -1.96
SS18-223	ENST00000583595	DEFB109B	Q30KR1	87 aa		2.83	□□□□□ -1.96

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms